Commit Graph

23878 Commits

Author SHA1 Message Date
Massimiliano Culpo
bd178ead14 gromacs: fix SIMD argument for ppc64le (#19435)
fixes #19414
2020-10-21 11:33:51 -05:00
Chuck Atkins
fdf0cde5b9 veloc: Add missing openssl dependency (#19437) 2020-10-21 12:32:35 -04:00
Andrew W Elble
d4a6efd021 scipoptsuite (#19430) 2020-10-21 10:56:16 -05:00
Andrew W Elble
e9eb9cdc41 py-hdbscan (#19428) 2020-10-21 10:53:43 -05:00
Andrew W Elble
c678f119ba glog (#19423) 2020-10-21 10:48:07 -05:00
Andrew W Elble
70cfdab372 gflags (#19422) 2020-10-21 10:47:31 -05:00
Andrew W Elble
a26b744b65 coinutils (#19421) 2020-10-21 10:46:50 -05:00
albestro
f006a54db2 Update git to 2.29.0 (#19415) 2020-10-21 11:39:43 -04:00
darmac
f4ecc8bad7 update version to avoid compile error (#19363)
* update version to avoid compile error

* Update var/spack/repos/builtin/packages/r-rgdal/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-21 10:39:02 -05:00
Kelly (KT) Thompson
490105ea20 Provide doxygen@1.8.20. (#19412) 2020-10-21 10:38:40 -05:00
darmac
1a57787686 py-cvxopt: refine dependency @1.1.9 and update version to @1.2.5 (#19385)
* refine dependency @1.1.9 and update version to @1.2.5

* refine depends_on() for python
2020-10-21 10:22:26 -05:00
iarspider
640d1a0034 Add FORM (#19397)
* Add recipe for qgraf

* Revert "Add recipe for qgraf"

This reverts commit 76783f7386.

* Add FORM

* Update package.py

Changes from review

Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-21 10:20:26 -05:00
iarspider
cf733b2dd2 Add QD (#19402)
* Add recipe for qgraf

* Revert "Add recipe for qgraf"

This reverts commit 76783f7386.

* Add QD

* Update package.py

Changes from review

Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-21 10:18:15 -05:00
Chris Richardson
f0712bde48 Add Allinea to cray-libsci (#19232) 2020-10-21 10:06:31 -05:00
Toyohisa Kameyama
35ad3bb0fc quantum-espresso: fix build fail @6.6 and add conflicts a64fx. (#19383)
* quantum-espresso: fix build fail @6.6 and add conflicts a64fx.

* get patch to gitlab.

* Add +patch
2020-10-21 10:03:54 -05:00
Omri Mor
1147220b9b CMakePackage: added 'ipo' variant (#18374)
+ipo sets CMAKE_INTERPROCEDURAL_OPTIMIZATION=ON
The option is not supported for CMake < 3.9
2020-10-21 11:09:45 +02:00
Massimiliano Culpo
bed929e7a9 Make url_fetch test independent of locale settings (#19390) 2020-10-21 09:18:50 +02:00
Greg Becker
a5faf7d27a Change 'any' to wildcard for variants (#19381) 2020-10-21 08:05:29 +02:00
Martin Aumüller
0e6b818c52 Add new packages: ispc & embree (#19361)
* Add new package: ispc

* Add new package: embree
2020-10-20 19:00:45 -05:00
iarspider
03611f2e89 Thepeg fix (#19405)
* Add recipe for qgraf

* Revert "Add recipe for qgraf"

This reverts commit 76783f7386.

* Fixes for thepeg

Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-20 16:33:17 -05:00
Josh Essman
cee5c2e755 mfem: Fix support for SUNDIALS and PETSc features (#19326)
* mfem: specify PETSC_DIR, link correct sundials libraries

* fix: only use PETSC_DIR directly for static builds

* fix: only use sundials nvecmpiplusx for MFEM 4.2+
2020-10-20 16:26:34 -05:00
eugeneswalker
fa9ad0a3da tau unwind patch: only patch 2.29, not 2.29.1 (#19409) 2020-10-20 16:25:52 -05:00
iarspider
d9bb90d06e Lhapdf extends python (#19398)
* Add recipe for qgraf

* Revert "Add recipe for qgraf"

This reverts commit 76783f7386.

* LHAPDF should extend Python to get env variables correct

Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-20 14:59:54 -05:00
Jean-Paul Pelteret
3a56248eba deal.II: Add more conflicts due to symbol clashes between dependencies (#19408) 2020-10-20 14:55:22 -05:00
Massimiliano Culpo
a51702e3a2 py-archspec: added new package at v0.1.1 (#19395) 2020-10-20 18:40:31 +02:00
darmac
53fc4f92b7 axel: fix build error (#19387) 2020-10-20 11:01:26 -05:00
Chuck Atkins
9241cad299 mesa: Restrict llvm to < 11 (#19393) 2020-10-20 11:59:50 -04:00
darmac
0d1002750e refine setuptools version to avoid spec conflict (#19384) 2020-10-20 10:56:05 -05:00
GaneshPrasadMA
0253f0af29 Adding AOCC compiler to SPACK community (#19345)
* Adding AOCC compiler to SPACK community

The AOCC compiler system offers a high level of advanced optimizations, multi-threading and processor support that includes global optimization, vectorization, inter-procedural analyses, loop transformations, and code generation. AMD also provides highly optimized libraries, which extract the optimal performance from each x86 processor core when utilized. The AOCC Compiler Suite simplifies and accelerates development and tuning for x86 applications.

* Added unit tests for detection and flags for AOCC

* Addressed reviewers comments w.r.t version checks and url,checksum related line lengths

Co-authored-by: Test User <spack@example.com>
2020-10-20 10:50:09 -05:00
ketsubouchi
f68287afe9 boost: fix building old versions with non-system glib and bzip2 (#19389) 2020-10-20 15:39:57 +02:00
Toyohisa Kameyama
9beadc3c14 krims: disable float80 when non x86_64. (#19388) 2020-10-20 15:37:47 +02:00
Roberto Di Remigio
bac1f94046 MRCPP: added new versions up to v1.3.5 (#19257)
Removed all alpha versions too
2020-10-20 14:07:22 +02:00
Seth R. Johnson
18960435af py-pyqt4: Require older version of PySIP (#19391)
Fixes #19322, thanks sto @Sinan81.
2020-10-20 14:05:11 +02:00
Greg Becker
bf47045302 Fix python scripts relying on external python in env (#19241) 2020-10-20 10:09:13 +02:00
Glenn Johnson
87da91cef6 add updated version of py-dnaio (#19374)
* add updated version of py-dnaio

* Add py-setuptools-scm build dependency

* Fine tune the py-xopen dependency constraint

The needed version of xopen does not become specific until v0.4 of
dnaio.

* Set constraint on py-setuptools-scm

The py-setuptools-scm dependency is needed beginning with v0.4.
2020-10-19 19:53:12 -05:00
Glenn Johnson
bb87c1ff54 updated version of py-cutadapt (#19373)
* updated version of py-cutadapt

* Update dependency specs

* Add py-setuptools-scm build dependency

* More constraint fixes

* Fix version range for py-xopen
2020-10-19 19:52:27 -05:00
Martin Aumüller
b5ff28522a Add new package: botan (#19362) 2020-10-19 19:51:15 -05:00
Sajid Ali
3fd3676fc0 gdbm patch (#19380)
* gdbm patching

* compiler name fix

* rename patch
2020-10-19 19:49:31 -05:00
Sajid Ali
7052c65031 external find for cpio (#19379)
* external find for cpio

* address reviewer comments
2020-10-19 17:48:27 -05:00
wspear
92bbc2e789 Added tau version 2.29.1 hash (#19329)
* Added tau version 2.29.1 hash

* Update var/spack/repos/builtin/packages/tau/package.py

Make version name match branch name (master)

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-19 16:25:58 -05:00
Scott Wittenburg
f561d3845b Fix "buildcache update-index --keys ..." when mirror is S3 (#19141) 2020-10-19 15:24:41 -06:00
Glenn Johnson
449604bfe8 add updated version of py-xopen (#19375)
* add updated version of py-xopen

* Update dependency constraints

* Further refine the python constraints

Also, put them all together.

* Put python constraints at top of list
2020-10-19 16:15:20 -05:00
Sergey Kosukhin
75bfdc7335 netcdf-fortran: support for Cray compiler (#18971) 2020-10-19 16:12:09 -05:00
Glenn Johnson
c31e96dcd7 New package - pulseaudio (#19378)
This PR adds the pulseaudio package and the speexdsp package as a
dependency. In addition, this PR adds a `libs` property to the libtool
package.
2020-10-19 16:11:45 -05:00
Glenn Johnson
95b9875e95 New package - Gate (#19377)
* New package - Gate

This PR adds the Gate package as well as the ITK dependency.

* Fix flake 8 errors

* Be more explicit with CMake options

Make sure Cmake values related to variants are explicitly set to either
ON/OFF.

The ITK_USE_MKL flag will turn on the following:
- USE_FFTWD=ON
- USE_FFTWF=ON
- USE_SYSTEM_FFTW=ON

Since the package depends on fftw-api, those options will always be set.
2020-10-19 16:07:47 -05:00
Glenn Johnson
152144f17a add updated version of trimgalore (#19376) 2020-10-19 14:53:12 -05:00
Glenn Johnson
302c69eb55 Add updated version of fastqc (#19372) 2020-10-19 13:57:43 -05:00
Dr. Christian Tacke
765b41fd34 util-linux: Add version 2.33.1 (#19370) 2020-10-19 13:27:40 -05:00
Robert Pavel
c3f3cea516 Added thrust@1.8.3 (#19368)
Added version 1.8.3 to thrust
2020-10-19 13:26:58 -05:00
Sebastian Schmitt
aef1ff7ec5 Remove version in extends (#19366)
extends expects the package name only.

Cf. #12480.
2020-10-19 13:26:37 -05:00