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Author SHA1 Message Date
eugeneswalker
577ea0a0a8 pmix: new versions (#40055) 2023-09-18 12:47:36 -07:00
Brian Vanderwende
4d8f9ff3e8 xxdiff: add new package (#40021) 
* Add new package xxdiff

* style fixes

* Versioning updates to match best practices

* Full hash and flex, bison as build deps
 2023-09-18 12:40:22 -07:00
rfeki
60ce6c7302 Add cuda as a variant to opa-psm2 (#39754) 
Signed-off-by: Raafat Feki <rfeki@cornelisnetworks.com>
 2023-09-18 12:28:37 -07:00
Manuela Kuhn
d111bde69e py-tqdm: add 4.66.1 (#39952) 2023-09-18 13:04:39 -06:00
eugeneswalker
3045ed0e43 Revert "gitlab ci: temporarily disable darwin aarch64 (#39974)" (#40052) 
This reverts commit 2c13361b09.
 2023-09-18 12:48:32 -06:00
Freifrau von Bleifrei
2de0e30016 SeLaLib: add new package (#39847) 2023-09-18 13:15:10 -05:00
Manuela Kuhn
15085ef6e5 py-tornado: add 6.3.3 (#39949) 
* py-tornado: add 6.3.3

* Fix style
 2023-09-18 11:18:36 -06:00
Manuela Kuhn
0c2849da4d py-twine: add 4.0.2 (#40026) 2023-09-18 11:50:51 -05:00
Manuela Kuhn
75eeab1297 py-types-psutil: add 5.9.5.16 (#40027) 2023-09-18 11:49:20 -05:00
Dom Heinzeller
b8e32ff6b3 Fix several build errors for hdf-eos2 (not only but in particular on macOS w/ apple-clang) (#39877) 
Fix permissions for configure file in var/spack/repos/builtin/packages/hdf-eos2/package.py, fix dependencies to match what hdf provides, update compiler flags for apple-clang
 2023-09-18 18:47:25 +02:00
Manuela Kuhn
e7924148af py-types-typed-ast: add 1.5.8.7 (#40047) 2023-09-18 11:47:00 -05:00
Manuela Kuhn
d454cf4711 py-types-urllib3: add 1.26.25.14 (#40048) 
* py-types-urllib3: add 1.26.25.14

* Fix style
 2023-09-18 11:44:26 -05:00
George Young
ba81ef50f5 cpat: new package @3.0.4 (#40022) 
* cpat: new package @3.0.4

* Update package.py

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
 2023-09-18 11:37:21 -05:00
Manuela Kuhn
d5dd4b8b5d py-types-python-dateutil: add 2.8.19.14 (#40038) 2023-09-18 11:34:53 -05:00
Manuela Kuhn
0e47548cb6 py-types-requests: add 2.31.0.2 (#40039) 2023-09-18 11:34:01 -05:00
Manuela Kuhn
74974d85f6 py-types-setuptools: add 68.2.0.0 (#40040) 2023-09-18 11:33:01 -05:00
dependabot[bot]
7925bb575e build(deps): bump docker/login-action from 2.2.0 to 3.0.0 (#39966) 
Bumps [docker/login-action](https://github.com/docker/login-action) from 2.2.0 to 3.0.0.
- [Release notes](https://github.com/docker/login-action/releases)
- [Commits](465a07811f...343f7c4344)

---
updated-dependencies:
- dependency-name: docker/login-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-09-18 18:23:37 +02:00
dependabot[bot]
976cb02f78 build(deps): bump docker/setup-qemu-action from 2.2.0 to 3.0.0 (#39968) 
Bumps [docker/setup-qemu-action](https://github.com/docker/setup-qemu-action) from 2.2.0 to 3.0.0.
- [Release notes](https://github.com/docker/setup-qemu-action/releases)
- [Commits](2b82ce82d5...68827325e0)

---
updated-dependencies:
- dependency-name: docker/setup-qemu-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-09-18 18:22:58 +02:00
dependabot[bot]
f1bdc74789 build(deps): bump docker/build-push-action from 4.2.1 to 5.0.0 (#39969) 
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 4.2.1 to 5.0.0.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](0a97817b6a...0565240e2d)

---
updated-dependencies:
- dependency-name: docker/build-push-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-09-18 18:22:41 +02:00
Lydéric Debusschère
920347c21a py-werkzeug: Add version 0.12.2 required by py-graphene-tornado @2.6.1 (#39984) 2023-09-18 11:21:22 -05:00
Ben Cowan
c00ece6cf2 Enabled building GCC 13.1 on darwin/aarch64. (#38667) 2023-09-18 18:20:19 +02:00
Juan Miguel Carceller
7b0157c7e7 python: Don't prefer 3.10 (#40036) 2023-09-18 10:08:49 -06:00
Lydéric Debusschère
1b3a2ba06a [add] py-ldap3: new recipe, required by py-metomi-rose (#39982) 2023-09-18 11:06:23 -05:00
Manuela Kuhn
dc22a80f86 py-traits: add 6.4.2 (#39976) 2023-09-18 10:57:47 -05:00
Manuela Kuhn
27d6a75692 py-trove-classifiers: add 2023.8.7 (#39977) 2023-09-18 10:50:55 -05:00
George Young
70456ce4a7 py-rseqc: add 5.0.1 (#39953) 
* py-rseqec: add 5.0.1

* Update package.py

* style ...

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
 2023-09-18 10:49:58 -05:00
Lydéric Debusschère
078369ec2b [chore] py-aniso8601: Add version 7.0.0 (#39808) 
* [chore] py-aniso8601: Add version 3.0.2 required by py-graphene

* py-aniso8601: Add version 7.0.0 and constraints on python version

* py-aniso8601: fix style

* [fix] py-aniso8601: remove version 3.0.2 which depends on removed version of python; set the minimal version of python to 3.7

* py-aniso8601: remove version constraint on python
 2023-09-18 10:46:30 -05:00
Diego Alvarez S
da8e022f6b Nextflow: add 22.04.3 (#40034) 2023-09-18 17:39:27 +02:00
George Young
c8a3f1a8ae chexmix: new package (#38441) 
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
 2023-09-18 17:36:44 +02:00
Michael Kuhn
be3f7b5da3 checksum: use FIXME instead of FIX ME when adding versions (#40050) 
The former is highlighted by editors, while the latter is not.
 2023-09-18 17:31:11 +02:00
Martin Aumüller
68d7ce3bb6 coin3d: apply upstream patches to fix build on Centos 8 (#39839) 
fixes undefined references to dlerror, dlopen, dlsym, dlclose and
XDefaultScreenOfDisplay, XScreenNumberOfScreen, XCreatePixmap, XFree, XFreePixmap, XCloseDisplay, XOpenDisplay
 2023-09-18 17:16:56 +02:00
Rémi Lacroix
7a490e95b6 Julia: Fix sha256 for some LLVM patches (#40041) 2023-09-18 10:52:00 +02:00
Joscha Legewie
088e4c6b64 grass: Update spec for gdal dependency (#38396) develop-2023-09-17 2023-09-15 21:36:46 -05:00
Caetano Melone
76816d722a CI: add spec to job vars (#39905) 
* CI: add details about built spec to ci job variables

Co-authored-by: Alec Scott <alec@bcs.sh>
Co-authored-by: Alec Scott <hi@alecbcs.com>
 2023-09-15 14:40:00 -06:00
Scott Wittenburg
cbabdf283c gitlab ci: submit the correct audience for protected publish jobs (#40046) 2023-09-15 20:09:18 +00:00
John W. Parent
060bc01273 Windows RPATHing: fix symlink error (#39933) 
With 349ba83, you cannot symlink() if the link already exists.
Update the simulated RPATHing logic on Windows to account for that.
 2023-09-15 12:55:18 -07:00
Harmen Stoppels
0280ac51ed linux-headers: drop rsync dep, add new version (#39867) 2023-09-15 17:23:29 +02:00
David Gardner
bd442fea40 update sha256 after new tarball uploads (#40030) 2023-09-15 17:20:37 +02:00
Massimiliano Culpo
fb9e5fcc4f Group primitive url/path handling functions together (#40028) 2023-09-15 15:43:23 +02:00
Jack Morrison
bc02453f6d Sandia OpenSHMEM: Update to include version 1.5.2 (#40025) 2023-09-15 08:38:47 -04:00
dependabot[bot]
74a6c48d96 build(deps): bump sphinx from 7.2.5 to 7.2.6 in /lib/spack/docs (#40029) 
Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 7.2.5 to 7.2.6.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES.rst)
- [Commits](https://github.com/sphinx-doc/sphinx/compare/v7.2.5...v7.2.6)

---
updated-dependencies:
- dependency-name: sphinx
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-09-15 09:51:51 +02:00
Alex Richert
854f169ded Add shared and pic variants to libxml2 (#38094) 2023-09-14 19:57:52 -07:00
Adam Grofe
94c2043b28 Add Scine QCMaquis recipe to builtin packages (#39709) 
* Add Scine QCMaquis recipe to builtin packages
* Format scine-qcmaquis recipe using black
* Remove import os from scine-qcmaquis recipe
* Reduce length of symmetries line in scine-qcmaquis
* Add myself as a maintainer of the scine-qcmaquis recipe
* Update Scine-QCMaquis recipe following the review
  PR URL: https://github.com/spack/spack/pull/39709
  Changes:
  - Updated Symmetries variant to us multi feature
  - Added dependency to boost+chrono since it was undocumented
  - Use define_from_variant to setup CMake args
  - Make version 3.1.2 be preferred since 3.1.3 build is broken
* Change build_tests boolean condition

---------

Co-authored-by: Adam Grofe <adamgrofe@microsoft.com>
 2023-09-14 17:57:42 -04:00
Scott Wittenburg
579df768ca gitlab ci: Put Cray binaries in public mirrors (#39938) 2023-09-14 15:11:29 -06:00
George Young
e004db8f77 meme: add 5.5.4, correct dependencies (#40014) 
* meme: add 5.5.4, correct dependencies
* variant renaming

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
 2023-09-14 13:52:40 -05:00
George Young
2d1cca2839 gffread: new package @0.12.7 (#40015) 
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
 2023-09-14 13:34:22 -04:00
Alex Richert
8dae369a69 Set # of ninja procs to 'make_jobs' for scipy (#293) (#38831) 2023-09-14 13:08:59 -04:00
Alex Richert
0d76436780 Add pic option & maintainer to lz4 (#38095) 
Co-authored-by: Greg Becker <becker33@llnl.gov>
 2023-09-14 09:50:11 -07:00
Massimiliano Culpo
34402beeb7 Ensure PythonExtension is consistent when finding externals (#40012) 
PythonExtension is a base class for PythonPackage, and
is meant to be used for any package that is a Python
extension but is not built using "python_pip".

The "update_external_dependency" method in the base
class calls another method that is defined in the derived
class.

Push "get_external_python_for_prefix" up in the hierarchy
to make method calls consistent.
 2023-09-14 18:26:40 +02:00
Dan LaManna
6a249944f5 Add OIDC tokens to gitlab-ci jobs (#39813) 
* Add OIDC tokens to gitlab-ci jobs

This should allow us to start issuing just-in-time generated
credentials for CI jobs that need to modify binary mirrors. The "aud"
claim of the token describes what the token is allowed to do. The
claim is verified against a set of rules on the IAM role using signed
information from GitLab. See spack-infrastructure for the claim
verification logic.

---------

Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
 2023-09-14 09:59:25 -06:00