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8098 Commits

Author SHA1 Message Date
Patrick Gartung
aac3799d2c Unset SPACK_INCLUDE_DIRS so the compiler wrapper does not prepend any -I flags. The assumption is that cmake will set the correct include flags. (#11129) 2019-04-08 14:30:22 -05:00
Michael Kuhn
db98f16382 zfp: Add 0.5.4 (#11016) 2019-04-08 09:11:28 +02:00
thelfer
3b5d7bfa99 Add new TFEL' versions (3.0.4, 3.1.4 and 3.2.1). Add new MGIS version (1.0.1). (#11109) 2019-04-08 09:09:14 +02:00
Cameron Smith
0e04410044 kokkos: update cuda conflict (#11110) 
see https://github.com/spack/spack/pull/10943#issuecomment-475303870
 2019-04-08 08:58:35 +02:00
Levi Baber
6e4b234d13 sra-toolkit new version (#11111) 2019-04-08 08:56:49 +02:00
Satish Balay
d11b1b18f0 netlib-scalapack: fix compatibility with mpi2 i.e openmpi-4 (#11124) 2019-04-07 10:01:54 -05:00
Abhinav Bhatele
ed66ccb6f2 ecp-proxy-apps: update version (#11119) 2019-04-06 15:33:29 -07:00
Satish Balay
90c7c74334 hypre: disable variant superlu-dist default (#11097) 2019-04-05 21:11:36 -05:00
Gregory Lee
af3e91926a fixes py-basemap package (#11104) 
* fixes py-basemap package
* remove basemap mpl_toolkit __init__.py
 2019-04-05 11:27:23 -07:00
Patrick Gartung
f1f582714c Set Geant4 cmake module path environment variable in dependents. (#11112) 2019-04-04 13:09:13 -05:00
Marco Comparato
553acbbe3d xcb-util-wm: add m4 build system dependency (#11056) 2019-04-04 13:11:02 +02:00
Abhinav Bhatele
8da6593e43 miniamr: add develop version and update release (#11101) 
* miniamr: add develop version and update release

* change from url to git

* add url back
 2019-04-03 16:17:04 -06:00
Abhinav Bhatele
5f3620f7ac raja: add newer versions (#11102) 2019-04-03 12:09:45 -06:00
Abhinav Bhatele
b2a2c31883 laghos: update dependencies (#11100) 2019-04-03 11:22:40 -06:00
Abhinav Bhatele
af2d166adf AMG: update version (#11099) 2019-04-03 11:11:06 -06:00
Phil Carns
03bb6500f3 fio package: add optional libaio dependency (#11083) 2019-04-02 18:21:45 -07:00
Neil Flood
c3e5c9981a proj package: add versions 5.2.0 and 5.1.0 (#11079) 
* Add versions 5.2.0 and 5.1.0
* Avoid adding version 6.0.0: this version has a new API that is
  not compatible with older versions (and dependents may break with
  it)
* Added comment block explaining the problems with version 6.x
* Replace old datumgrid resource (1.7) with new (1.8)
* Add speculative sqlite dependency for when a 6.x version is added
 2019-04-02 18:18:56 -07:00
Elsa Gonsiorowski, PhD
9b5ce67f1e ross package: add version 7.0.1 (#11078) 
* add version 7.0.1
* replace md5 with sha256 for various versions.
* v7.0.1 fixes some environment hacking to properly find MPI and
  system architecture
 2019-04-02 17:50:41 -07:00
Ryan S. Elliott
3c641f47cd kim-api and openkim-models: version update and rename (#11065) 2019-04-02 17:44:24 -07:00
Jon Rood
0cb08e42f5 Trilinos: Add Tpetra_INST_INT_LONG_LONG to explicit template instantiation (#11060) 2019-04-02 17:38:52 -07:00
Seth R. Johnson
f237c81060 openmpi: Add stub mpirun script for openmpi~legacylaunchers+slurm (#11059) 
This adds a stub script for mpirun and other standard executables
when installing OpenMPI with slurm. The purpose is to make the
removal less of a surprise to administrators/users: it explains why
they were removed and how to restore them.
 2019-04-02 17:34:25 -07:00
Justin Stanley
3988732ef4 r-hoardr: new package at 0.5.2 (#11051) 2019-04-02 17:28:05 -07:00
Justin Stanley
6500310b08 r-roxygen2 package: added 6.1.1, more dependencies (#11045) 2019-04-02 17:27:04 -07:00
Justin Stanley
f459bba322 r-rhmmer: new package at 0.1.0 (#11050) 2019-04-02 17:25:55 -07:00
Justin Stanley
f5d61f8f58 r-commonmark: new package at 1.7 (#11049) 2019-04-02 17:22:42 -07:00
Justin Stanley
8710203e08 r-pkgload: new package at 1.0.2 (#11047) 2019-04-02 17:21:55 -07:00
Justin Stanley
6ac99f6275 r-desc: new package at 1.2.0 (#11048) 2019-04-02 17:10:24 -07:00
Justin Stanley
e094821a54 r-pkgbuild: new package at 1.0.3 (#11046) 2019-04-02 17:09:59 -07:00
Denis Davydov
ecde4502f2 arpack-ng package: add version 3.7.0 (#11041) 2019-04-02 17:08:16 -07:00
Gregory Lee
8625faefc9 mvapich2 package: add version 2.3.1 (#11037) 2019-04-02 17:07:06 -07:00
Dustin Lagoy
229ed5c228 netcdf-cxx package: set ldflags for hdf5 and netcdf (#11026) 
Ensure that netcdf-cxx uses the Spack-installed hdf5 and netcdf4
rather than system-installed versions.
 2019-04-02 17:04:09 -07:00
Jon Rood
bc4c372ebd nalu-wind package: require hypre without superlu-dist. (#11022) 2019-04-02 17:02:22 -07:00
Eric Martin
6d6bc8010f picard package: Add version 2.19.0 (#11018) 2019-04-02 17:01:17 -07:00
Matthias Wolf
9fc4489ee1 py-arrow and arrow: add version 0.12.1 (#11004) 
Also constrain the py-arrow version to depend on the same version
of arrow (e.g. 0.12.1 of py-arrow depends on 0.12.1 of arrow)
 2019-04-02 17:00:04 -07:00
Christoph Junghans
27a72cf7fe branson: fix install (#11093) 2019-04-02 16:44:46 -06:00
Christoph Junghans
81f1bd7732 nut: fix install (#11092) 2019-04-02 16:38:03 -06:00
Christoph Junghans
7a28a61a59 miniqmc: fix install (#11091) 2019-04-02 16:23:37 -06:00
Christoph Junghans
356b5df715 kripke: fix install (#11090) 2019-04-02 16:05:21 -06:00
Christoph Junghans
82be3a4668 hacckernels: fix install (#11089) 2019-04-02 15:58:40 -06:00
Christoph Junghans
4ff3ce494a macsio: fix install (#11088) 2019-04-02 15:58:21 -06:00
Vanessasaurus
b08518dadd adding package to install squashfs for singularity (#11077) 
* adding package to install squashfs for singularity

* dont need os import

Signed-off-by: Vanessa Sochat <vsochat@stanford.edu>

* updating md5 to sha1 for squashfs package

Signed-off-by: Vanessa Sochat <vsochat@stanford.edu>

* two blank lines

Signed-off-by: Vanessa Sochat <vsochat@stanford.edu>
 2019-04-02 12:33:23 -05:00
Gregory Lee
007e168b9e add pkgconfig as dependence for flux packages (#11036) 2019-04-01 18:33:55 +02:00
Nichols A. Romero
0ccc69411b QMCPACK MKL buglet. Now you are able to use the Intel compiler with other BLAS and LAPACK providers, no longer forced to use MKL. (#11019) 2019-03-31 19:31:59 -05:00
Matthias Diener
6034ddfed8 cmake: add version 3.14.1 (#11063) 2019-03-31 19:22:59 -05:00
Satish Balay
4946e1d0a2 petsc: update superlu-dist dependency (#11068) 2019-03-31 12:20:15 -05:00
Satish Balay
7eb734c4d9 slepc: add versions 3.10.2 and 3.11 (#11067) 2019-03-31 12:19:58 -05:00
Satish Balay
650a15436b superlu-dist: add version 6.1.1 (#11066) 2019-03-31 12:19:43 -05:00
Denis Davydov
def5b23763 add libs property to IntelMkl and IntelParallelStudio (#10993) 
* add libs property to IntelMkl and IntelParallelStudio
* fix scalapack_libs when MPI is provided by intel-parallel-studio
 2019-03-29 13:01:43 -07:00
Satish Balay
03d39ed34c petsc: add versions 3.10.5, 3.11.0 (#11058) 2019-03-29 11:54:23 -05:00
Kelly (KT) Thompson
b2b91a1f00 Random123 - provide a patch to fix compiles with IBM XL (#11028) 
* Newer versions of IBM XL no longer define `__xlC__`, but define `__ibmxl__`
  instead.  This one-line patch fixes this problem in Random123.
* This patch was also provided to the Random123 maintiners
  (Random123@DEShawResearch.com). I don't expect a new release from them for a
  while, so I believe that this patch is the correct path forward (for now).
 2019-03-28 17:20:28 -05:00