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Author SHA1 Message Date
Alec Scott
2b3939a65e vtk: add v9.2.6 (#37131) 2023-04-24 10:29:45 +02:00
Alec Scott
2be4200455 zstr: add v1.0.7 (#37132) 2023-04-24 10:29:21 +02:00
Wouter Deconinck
a3354a547f py-numpy: set openblas symbol_suffix in site.cfg (#37134) 
* py-numpy: set openblas `symbol_suffix` in site.cfg

This writes the correct `symbol_suffix` variant value from the `openblas` in the spec into the `site.cfg`. Fixes #37133.

* py-numpy: fix style

* py-numpy: handle symbol_suffix == "none"
 2023-04-23 09:27:26 -04:00
Andrew W Elble
8143c086a0 qgis: unpin qca, update qca (#37049) 
allows compilation with gcc 11
 2023-04-22 17:41:39 -05:00
Wouter Deconinck
806f630c8f (py-)codecov: not on pypi anymore, replace by static binary (#36809) 
* py-codecov: deprecate since not on pypi anymore

* codecov: new package

* [@spackbot] updating style on behalf of wdconinc

* codecov: use github URL instead, multi-platform

* fix: install to prefix.bin.codecov

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* codecov: use versions lookup dict

* codecov: versions -> _versions, fix style

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2023-04-22 11:01:15 -05:00
Alec Scott
9d2aab415d bubblewrap: add v0.8.0 (#37100) 2023-04-22 15:40:01 +02:00
Erik Schnetter
a5d1c645a0 hwloc: New version 2.9.1 (#37084) 2023-04-22 04:22:37 -04:00
Erik Schnetter
d443a44854 openblas: New version 0.3.23 (#36986) 
Silence make

Set a fixed and large NUM_THREADS by default, to avoid that it gets initialized with the host # CPUs.

Set OMP_NUM_THREADS/OPENBLAS_NUM_THREADS in terms of make_jobs so that tests don't need excessive CPU.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2023-04-22 09:02:28 +02:00
Wouter Deconinck
6808df5729 opencascade: new version 7.7.1 (#37057) 
No build system or dependency changes necessary.

New maintenance release announcement at https://www.opencascade.com/open-cascade-technology-7-7-1-maintenance-release/.

Full diff from 7.7.0 to 7.7.1 at https://git.dev.opencascade.org/gitweb/?p=occt.git;a=commitdiff;h=ffce0d66bbaafe3a95984d0e61804c201b9995d2;hp=185d29b92f6764ffa9fc195b7dbe7bba3c4ac855
 2023-04-21 22:11:18 -07:00
Adam J. Stewart
6e4e7ab8b1 GDAL: add v3.6.4 (#37087) 2023-04-21 15:18:03 -07:00
John W. Parent
d8451b0c3f Windows: shell variables are case-insensitive (#36813) 
If we modify both Path and PATH, on Windows they will clobber one
another. This PR updates the shell modification logic to automatically
convert variable names to upper-case on Windows.
 2023-04-21 11:38:58 -07:00
Alec Scott
255c9ed5e9 librdkafka: add v2.1.0 (#36853) 2023-04-21 10:52:01 -07:00
Keita Iwabuchi
bd8e27503e Metall: add v0.24 and v0.25 (#36981) 
* Metall package: add v0.22, v0.23, and v0.23.1
* Metall package: add v0.24 and v0.25
* Metall package: increase required Boost version
 2023-04-21 10:50:01 -07:00
Bryce Torcello
459c5cfad6 r: fix building :3.6.1 with gcc 10: (#37080) 2023-04-21 11:43:09 -05:00
Robert Underwood
ff689be250 py-cupy allow customizing architecture and threads (#37072) 
* py-cupy allow customizing architecture and threads

* Update var/spack/repos/builtin/packages/py-cupy/package.py

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>

* add missing self

---------

Co-authored-by: Robert Underwood <runderwood@anl.gov>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2023-04-21 09:52:47 -05:00
eflumerf
aaac8b0545 xmlrpc-c: Add variant to enable curl client (#37075) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2023-04-21 16:50:10 +02:00
Tim Haines
066e1e083d Dyninst: add conflict for intel-parallel-studio (#37036) 2023-04-21 16:49:23 +02:00
John W. Parent
5c742d4f2b Hraden Spack's powershell interface (#37079) 
Paths with spaces are an issue on Windows and our current powershell
scripts are not sufficiently hardended against their use.
This PR removes promlematic commandlets that do not work well with paths
with spaces and adds escape quotes in other areas where this could be an
issue.
 2023-04-21 08:58:37 -05:00
markus-ferrell
c64ca97877 Enable verify tests on windows (#36975) 2023-04-21 14:32:33 +02:00
markus-ferrell
cd4dddbef1 Enable versions cmd tests on windows (#36974) 2023-04-21 14:31:14 +02:00
markus-ferrell
e77b1da772 Enable test suite tests on windows (#36966) 2023-04-21 14:18:06 +02:00
markus-ferrell
e1e8d3b66e Enable database tests for windows (#36968) 2023-04-21 14:15:29 +02:00
markus-ferrell
962df6334d Enable config values tests on windows (#36969) 2023-04-21 14:15:09 +02:00
markus-ferrell
ba255cf5ec Enable graph tests on windows (#36967) 2023-04-21 14:14:51 +02:00
Annop Wongwathanarat
2ca049e74a armpl-gcc: fix PKG_CONFIG_PATH for 23.04 (#37001) 2023-04-21 14:10:03 +02:00
snehring
cd2893640d interproscan: add version 5.61-93.0, fix build issue (#37009) 2023-04-21 14:05:23 +02:00
Glenn Johnson
b686974160 augustus: add version 3.5.0 (#37037) 
Adjust dependencies and constraints.
 2023-04-21 12:01:00 +02:00
Eric Brugger
3303dcbfbd VisIt: add v3.3.3. (#37034) 2023-04-21 11:59:20 +02:00
Glenn Johnson
950079845c zziplib: support multiple build systems (#37058) 
This PR rewrites the zziplib recipe to use Spack's multiple build system
support.
 2023-04-21 11:58:00 +02:00
Brian Vanderwende
57b56499b2 Add flag handler for mpi-serial (#37060) 2023-04-21 11:55:30 +02:00
Glenn Johnson
00715a66a1 arpack-ng: add version 3.9.0 (#37032) 2023-04-21 11:43:33 +02:00
dependabot[bot]
581bd6bb9a build(deps): bump codecov/codecov-action from 3.1.2 to 3.1.3 (#37077) 
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3.1.2 to 3.1.3.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)
- [Commits](40a12dcee2...894ff025c7)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-04-21 11:41:06 +02:00
dependabot[bot]
056eb659bb build(deps): bump actions/setup-python from 4.5.0 to 4.6.0 (#37078) 
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.5.0 to 4.6.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](d27e3f3d7c...57ded4d7d5)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-04-21 11:40:37 +02:00
Thomas Madlener
6476b2d79c edm4hep: add v0.8 (#37006) 2023-04-21 11:31:42 +02:00
Ashwin Kumar Karnad
a2078d709b octopus: add v12.2 (#35487) 2023-04-21 11:30:30 +02:00
Ashwin Kumar Karnad
c8ad4807c2 octopus: fix download links (#37081) 2023-04-21 05:22:34 -04:00
Harmen Stoppels
7cf53a647e readline: fix for nvhpc (#37024) 2023-04-21 11:02:55 +02:00
Massimiliano Culpo
cac44b9e15 Update archspec to latest release (#37070) 
Fix -mcpu flags for gcc on neoverse-v1

Add support for NVHPC flags
 2023-04-21 11:01:37 +02:00
Wouter Deconinck
354d59500b glib: new versions 2.76.1, 2.74.7 (#36361) 
* glib: new version 2.76.1

This adds a new stable version of glib, 2.76.1 (skipping the 2.75 unstable series).

`mkenums.py` check now is specified as a dict, after r62dca6c1cf. The `filter_file` should disable both old and new. Better (maybe, but more complicated) would be to add the `can_fail` flag for this test.

The `iconv` argument was already deprecated and has now been removed. It is now resolved through meson itself, e71ecc8771.

Builds successfully on my system (and several dependents on top of it):
```console
==> glib: Successfully installed glib-2.76.1-7iy4mee2evabd357gviozbtyh5yxi27t
```
as does the previous 2.74.6 version

* glib: patch for 2.76.1, new version 2.74.7
 2023-04-21 10:25:55 +02:00
Paul R. C. Kent
a639b22c7c add-llvm-1601-1602 (#37026) 2023-04-20 19:56:52 -07:00
Wouter Deconinck
4f13e2fa15 py-ocnn: new package (octree-based sparse CNN) (#37030) 
O-CNN is an octree-based sparse convolutional neural network framework for 3D deep learning. It is built on py-torch.
 2023-04-20 21:43:47 -05:00
Bernhard Kaindl
e3109a96d4 bcache: Simplify check if -lintl shall be added to LDFLAGS (#36569) 
Replace my initial libintl check with the much nicer check for
"intl" in self.spec["gettext"].libs.names. Thanks to Chris Green!

Co-authored-by: Bernhard Kaindl <bkaindl@gmail.com>
 2023-04-20 18:56:49 -07:00
Pariksheet Nanda
0b606b01dc uqtk: bump (#36670) 
1. support version 3.1.3, which now depends on sundials@6

2. support version 3.1.2:, which broke the two patch files and
   therefore the two patch files have been replaced by more flexible
   filter_file() commands inside a patch() function.

3. rename the variant for python extension from using the package name
   "+pyuqtk" to the more standard "+python"

4. add maintainers @omsai and the upstream developer @bjdebus who
   offered to help with the spack packaging.

5. swig should only be a build-time dependency.  swig is only
   necessary until @:3.1.0

6. confirmed python dependencies are correct by inspecting imports,
   subset python dependencies type to build, run, and confirmed all
   31 build-time tests pass including the 9 python tests:

```console
$ spack env create uqtk-dev
$ spack add uqtk@3.1.3
$ spack install --test root && cat $(spack location -i uqtk)/.spack/install-time-test-log.txt
==> Testing package uqtk-3.1.3-nok6fut
==> [2023-04-19-14:56:25.005361] Running build-time tests
==> [2023-04-19-14:56:25.005536] RUN-TESTS: build-time tests [check]
==> [2023-04-19-14:56:25.009543] '/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/gmake-4.4.1-b6g4apmfvxz3bn4eabh37dehcrg65fj7/bin/make' '-j4' '-n' 'test'
==> [2023-04-19-14:56:25.014903] '/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/gmake-4.4.1-b6g4apmfvxz3bn4eabh37dehcrg65fj7/bin/make' '-j4' 'test'
Running tests...
/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/cmake-3.26.3-zjmsfz23j5l4ytniz26uzvxonlu5qebr/bin/ctest --force-new-ctest-process
Test project /tmp/omsai/spack-stage/spack-stage-uqtk-3.1.3-nok6fut47h42cnaau7wkoohgqy5f2qqa/spack-build-nok6fut
      Start  1: ArrayReadAndWrite
      Start  2: ArrayDelColumn
      Start  3: Array1DMiscTest
      Start  4: Array2DMiscTest
 1/31 Test  #1: ArrayReadAndWrite ................   Passed    0.01 sec
      Start  5: ArraySortTest
 2/31 Test  #2: ArrayDelColumn ...................   Passed    0.01 sec
      Start  6: MultiIndexTest
 3/31 Test  #3: Array1DMiscTest ..................   Passed    0.01 sec
      Start  7: CorrTest
 4/31 Test  #4: Array2DMiscTest ..................   Passed    0.01 sec
      Start  8: QuadLUTest
 5/31 Test  #5: ArraySortTest ....................   Passed    0.02 sec
      Start  9: MCMC2dTest
 6/31 Test  #6: MultiIndexTest ...................   Passed    0.01 sec
      Start 10: MCMCRandomTest
 7/31 Test  #8: QuadLUTest .......................   Passed    0.02 sec
      Start 11: MCMCNestedTest
 8/31 Test #10: MCMCRandomTest ...................   Passed    0.02 sec
      Start 12: Deriv1dTest
 9/31 Test #12: Deriv1dTest ......................   Passed    0.01 sec
      Start 13: SecondDeriv1dTest
10/31 Test #13: SecondDeriv1dTest ................   Passed    0.01 sec
      Start 14: GradHessianTest
11/31 Test #11: MCMCNestedTest ...................   Passed    0.03 sec
      Start 15: GradientPCETest
12/31 Test #14: GradHessianTest ..................   Passed    0.01 sec
      Start 16: PCE1dTest
13/31 Test #15: GradientPCETest ..................   Passed    0.01 sec
      Start 17: PCEImplTest
14/31 Test #16: PCE1dTest ........................   Passed    0.01 sec
      Start 18: PCELogTest
15/31 Test #18: PCELogTest .......................   Passed    0.01 sec
      Start 19: Hessian2dTest
16/31 Test #19: Hessian2dTest ....................   Passed    0.01 sec
      Start 20: BCS1dTest
17/31 Test #20: BCS1dTest ........................   Passed    0.01 sec
      Start 21: BCS2dTest
18/31 Test #21: BCS2dTest ........................   Passed    0.01 sec
      Start 22: LowRankRegrTest
19/31 Test #22: LowRankRegrTest ..................   Passed    0.01 sec
      Start 23: PyModTest
20/31 Test #17: PCEImplTest ......................   Passed    0.07 sec
      Start 24: PyArrayTest
21/31 Test #23: PyModTest ........................   Passed    0.08 sec
      Start 25: PyArrayTest2
22/31 Test #25: PyArrayTest2 .....................   Passed    0.30 sec
      Start 26: PyQuadTest
23/31 Test #24: PyArrayTest ......................   Passed    1.44 sec
      Start 27: PyBCSTest1D
24/31 Test #26: PyQuadTest .......................   Passed    1.68 sec
      Start 28: PyBCSTest2D
25/31 Test #27: PyBCSTest1D ......................   Passed    1.66 sec
      Start 29: PyBADPTest
26/31 Test  #7: CorrTest .........................   Passed    3.43 sec
      Start 30: PyRegressionTest
27/31 Test #28: PyBCSTest2D ......................   Passed    1.50 sec
      Start 31: PyGalerkinTest
28/31 Test  #9: MCMC2dTest .......................   Passed    3.90 sec
29/31 Test #29: PyBADPTest .......................   Passed    1.66 sec
30/31 Test #30: PyRegressionTest .................   Passed    1.72 sec
31/31 Test #31: PyGalerkinTest ...................   Passed    1.63 sec

100% tests passed, 0 tests failed out of 31

Total Test time (real) =   5.35 sec
==> [2023-04-19-14:56:30.382797] '/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/gmake-4.4.1-b6g4apmfvxz3bn4eabh37dehcrg65fj7/bin/make' '-j4' '-n' 'check'
==> [2023-04-19-14:56:30.385983] Target 'check' not found in Makefile
```
 2023-04-20 18:53:39 -07:00
afzpatel
134b954c7f enabling test for rccl hsakmt-roct and rocm-opencl (#35465) 
* initial commit for enabling test for rccl hsakmt-roct and rocm-opencl
* fix styling and cleaning code
* adding missing imports and minor fixes
* minor style fix
* moidfying hsakmt-roct test to run right after installation
 2023-04-20 18:39:49 -07:00
Daniel Ahlin
bf970ebf9d nccl-fastsocket: initial packaging for nccl-fastsocket (#36557) 
* nccl-fastsocket: Add NCCL transport plugin for GCP
* nccl-fastsocket: remove auto-gen. header and fix maintainers
* Update var/spack/repos/builtin/packages/nccl-fastsocket/package.py
* nccl-fastsocket: Add rationale for setting LD_LIBRARY_PATH

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2023-04-20 21:38:40 -04:00
MatthewLieber
af47b9170c osu-micro-benchmarks: adding sha for 7.1 release (#36702) 
* adding sha for 7.1 release
* add a new version

---------

Co-authored-by: Matt Lieber <lieber.31@osu.edu>
 2023-04-20 18:33:58 -07:00
Ashwin Kumar Karnad
bf04551bf5 Fix bigdft-suite compilation (#36612) 
(from d20f284100)
 2023-04-20 18:18:11 -07:00
Wouter Deconinck
a419ffcf50 osg-ca-certs: igtf link should point to version, not 'current' (#35977) 
* osg-ca-certs: igtf link should point to version, not 'current'
* osg-ca-certs: new version 1.110.igtf.1.119
* [@spackbot] updating style on behalf of wdconinc

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
 2023-04-20 18:09:27 -07:00
Cory Bloor
de7c82f13f hiprand: split into new package (#36798) 2023-04-20 17:48:54 -07:00
Adam J. Stewart
37fb2c8dce py-kornia: add v0.6.12 (#37074) 2023-04-20 20:48:35 -04:00