Commit Graph

1081 Commits

Author SHA1 Message Date
dependabot[bot]
4056c1f632
build(deps): bump pytest from 7.4.3 to 7.4.4 in /lib/spack/docs (#41918)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.4.3 to 7.4.4.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/7.4.3...7.4.4)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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2024-01-02 16:26:43 +01:00
Todd Gamblin
3118647802
Update copyright year to 2024 (#41919)
It was time to run `spack license update-copyright-year` again.
2024-01-02 09:21:30 +01:00
dependabot[bot]
a17c7e9cbb
build(deps): bump black from 23.12.0 to 23.12.1 in /lib/spack/docs (#41852)
Bumps [black](https://github.com/psf/black) from 23.12.0 to 23.12.1.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.12.0...23.12.1)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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2023-12-28 10:26:31 +01:00
dependabot[bot]
3d4afb0d73
build(deps): bump mypy from 1.7.1 to 1.8.0 in /lib/spack/docs (#41821)
Bumps [mypy](https://github.com/python/mypy) from 1.7.1 to 1.8.0.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/v1.7.1...v1.8.0)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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2023-12-24 06:59:21 -08:00
Alec Scott
2f0df0131c
Fix a couple typos in the docs (#41822) 2023-12-22 14:08:53 -06:00
Harmen Stoppels
7e2e063979
containers.rst: small docs improvement (#41792) 2023-12-20 11:54:41 +01:00
Harmen Stoppels
16e27ba4a6
spack buildcache push --tag: create container image with multiple roots (#41077)
This PR adds a flag `--tag/-t` to `buildcache push`, which you can use like

```
$ spack mirror add my-oci-registry oci://example.com/hello/world
$ spack -e my_env buildcache push --base-image ubuntu:22.04 --tag my_custom_tag my-oci-registry
```

and lets users ship a full, installed environment as a minimal container image where each image layer is one Spack package, on top of a base image of choice. The image can then be used as

```
$ docker run -it --rm example.com/hello/world:my_custom_tag
```

Apart from environments, users can also pick arbitrary installed spec from their database, for instance:

```
$ spack buildcache push --base-image ubuntu:22.04 --tag some_specs my-oci-registry gcc@12 cmake
$ docker run -it --rm example.com/hello/world:some_specs
```

It has many advantages over `spack containerize`:

1. No external tools required (`docker`, `buildah`, ...)
2. Creates images from locally installed Spack packages (No need to rebuild inside `docker build`, where troubleshooting build failures is notoriously hard)
3. No need for multistage builds (Spack just tarballs existing installations of runtime deps)
4. Reduced storage size / composability: when pushing multiple environments with common specs, container image layers are shared.
5. Automatic build cache: later `spack install` of the env elsewhere speeds up since the containerized environment is a build cache
2023-12-20 11:31:41 +01:00
dependabot[bot]
138d0c7a13
build(deps): bump black from 23.11.0 to 23.12.0 in /lib/spack/docs (#41615)
Bumps [black](https://github.com/psf/black) from 23.11.0 to 23.12.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.11.0...23.12.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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2023-12-19 17:14:05 +01:00
Greg Becker
56761649a2
environment modifications for externals (#41723)
* allow externals to configure environment modifications

* docs for external env modification

---------

Co-authored-by: becker33 <becker33@users.noreply.github.com>
2023-12-18 22:24:15 -06:00
dependabot[bot]
639a6a6897
build(deps): bump isort from 5.12.0 to 5.13.2 in /lib/spack/docs (#41651)
Bumps [isort](https://github.com/pycqa/isort) from 5.12.0 to 5.13.2.
- [Release notes](https://github.com/pycqa/isort/releases)
- [Changelog](https://github.com/PyCQA/isort/blob/main/CHANGELOG.md)
- [Commits](https://github.com/pycqa/isort/compare/5.12.0...5.13.2)

---
updated-dependencies:
- dependency-name: isort
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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2023-12-18 10:23:18 -08:00
Harmen Stoppels
8c29e90fa9
Build cache: make signed/unsigned a mirror property (#41507)
* Add `signed` property to mirror config

* make unsigned a tri-state: true/false overrides mirror config, none takes mirror config

* test commands

* Document this

* add a test
2023-12-11 15:14:59 -06:00
Harmen Stoppels
a2ed4704e7
Link to GitHub Action spack/setup-spack in docs (#41509) 2023-12-11 11:12:40 +01:00
Billae
eb9c63541a
documentation: add instructions on how to use external opengl (#40987) 2023-12-05 12:59:41 +01:00
Massimiliano Culpo
456f2ca40f
extensions: improve docs, fix unit-tests (#41425) 2023-12-05 09:49:35 +01:00
dependabot[bot]
e6107e336c
build(deps): bump docutils from 0.18.1 to 0.20.1 in /lib/spack/docs (#38174)
Bumps [docutils](https://docutils.sourceforge.io/) from 0.18.1 to 0.20.1.

---
updated-dependencies:
- dependency-name: docutils
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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2023-12-01 17:16:34 +01:00
dependabot[bot]
2794e14870
build(deps): bump pygments from 2.17.1 to 2.17.2 in /lib/spack/docs (#41212)
Bumps [pygments](https://github.com/pygments/pygments) from 2.17.1 to 2.17.2.
- [Release notes](https://github.com/pygments/pygments/releases)
- [Changelog](https://github.com/pygments/pygments/blob/2.17.2/CHANGES)
- [Commits](https://github.com/pygments/pygments/compare/2.17.1...2.17.2)

---
updated-dependencies:
- dependency-name: pygments
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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2023-12-01 12:29:42 +01:00
dependabot[bot]
cc1e990c7e
build(deps): bump sphinx-rtd-theme in /lib/spack/docs (#41305)
Bumps [sphinx-rtd-theme](https://github.com/readthedocs/sphinx_rtd_theme) from 1.3.0 to 2.0.0.
- [Changelog](https://github.com/readthedocs/sphinx_rtd_theme/blob/master/docs/changelog.rst)
- [Commits](https://github.com/readthedocs/sphinx_rtd_theme/compare/1.3.0...2.0.0)

---
updated-dependencies:
- dependency-name: sphinx-rtd-theme
  dependency-type: direct:production
  update-type: version-update:semver-major
...

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2023-12-01 12:29:22 +01:00
dependabot[bot]
59e6b0b100
build(deps): bump mypy from 1.7.0 to 1.7.1 in /lib/spack/docs (#41243)
Bumps [mypy](https://github.com/python/mypy) from 1.7.0 to 1.7.1.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/v1.7.0...v1.7.1)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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2023-12-01 09:22:23 +01:00
Christopher Christofi
3bc8a7aa5f
use double quotes where spack style finds errors (#41349) 2023-11-30 09:46:02 +01:00
Andrey Perestoronin
3d744e7c95
intel-oneapi 2024.0.0: added new version to packages (#41135)
* oneapi 2024.0.0 release

* oneapi v2 directory support and some cleanups

* sycl abi change requires 2024 compilers for packages that use sycl

---------

Co-authored-by: Robert Cohn <robert.s.cohn@intel.com>
2023-11-27 13:13:04 -05:00
Harmen Stoppels
e0ef78b26e
docs: refer to oci build cache from containers.rst (#41269) 2023-11-27 16:36:00 +00:00
Massimiliano Culpo
343517e794
Improve semantic for packages:all:require (#41239)
An `all` requirement is emitted for a package if all variants referenced are defined by it. Otherwise, the constraint is rejected.
2023-11-27 12:41:16 +01:00
dependabot[bot]
ae38987cb4
build(deps): bump pygments from 2.16.1 to 2.17.1 in /lib/spack/docs (#41191)
Bumps [pygments](https://github.com/pygments/pygments) from 2.16.1 to 2.17.1.
- [Release notes](https://github.com/pygments/pygments/releases)
- [Changelog](https://github.com/pygments/pygments/blob/master/CHANGES)
- [Commits](https://github.com/pygments/pygments/compare/2.16.1...2.17.1)

---
updated-dependencies:
- dependency-name: pygments
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-11-21 01:12:50 -07:00
Harmen Stoppels
55d2ee9160
docs: document how spack picks a version / variant (#41070) 2023-11-20 09:00:53 +01:00
Tim Wickberg
67c2c80cf4
Use preferred capitalization of "Slurm" (#41109)
https://slurm.schedmd.com/faq.html#acronym
2023-11-16 22:40:54 +00:00
Harmen Stoppels
2f24aeb7f6
docs: packages config on separate page, demote bootstrapping (#41085) 2023-11-15 15:49:16 +00:00
dependabot[bot]
a80b4fd20d
build(deps): bump urllib3 from 2.0.7 to 2.1.0 in /lib/spack/docs (#41055)
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.7 to 2.1.0.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/2.0.7...2.1.0)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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2023-11-14 09:33:41 +01:00
dependabot[bot]
d9de93a0fc
build(deps): bump black from 23.10.1 to 23.11.0 in /lib/spack/docs (#40967)
Bumps [black](https://github.com/psf/black) from 23.10.1 to 23.11.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.10.1...23.11.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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2023-11-13 08:18:06 -07:00
dependabot[bot]
4e171453c0
build(deps): bump mypy from 1.6.1 to 1.7.0 in /lib/spack/docs (#41020)
Bumps [mypy](https://github.com/python/mypy) from 1.6.1 to 1.7.0.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/v1.6.1...v1.7.0)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-11-13 10:13:26 +01:00
Todd Gamblin
45f8a0e42c
docs: tweak formatting of +: and -: operators (#40988)
Just trying to make these stand out a bit more in the docs.
2023-11-09 19:55:29 +00:00
Massimiliano Culpo
f3537bc66b
ASP: targets, compilers and providers soft-preferences are only global (#31261)
Modify the packages.yaml schema so that soft-preferences on targets,
compilers and providers can only be specified under the "all" attribute.
This makes them effectively global preferences.

Version preferences instead can only be specified under a package
specific section.

If a preference attribute is found in a section where it should
not be, it will be ignored and a warning is printed to screen.
2023-11-07 07:46:06 +01:00
Harmen Stoppels
e7372a54a1
docs: expand section about relocation, suggest padding (#40909) 2023-11-06 14:49:54 -08:00
Michael Kuhn
5074b7e922
Add support for aliases (#17229)
Add a new config section: `config:aliases`, which is a dictionary mapping aliases
to commands.

For instance:


```yaml
config:
    aliases:
        sp: spec -I
```

will define a new command `sp` that will execute `spec` with the `-I`
argument. 

Aliases cannot override existing commands, and this is ensured with a test.

We cannot currently alias subcommands. Spack will warn about any aliases
containing a space, but will not error, which leaves room for subcommand
aliases in the future.

---------

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2023-11-06 14:37:46 -08:00
Harmen Stoppels
4700108b5b
fix prefix_inspections keys in example (#40904) 2023-11-06 13:22:13 -08:00
Harmen Stoppels
3384181868
docs: mention public build cache for GHA (#40908) 2023-11-06 13:21:16 -08:00
Harmen Stoppels
1235084c20
Introduce default_args context manager (#39964)
This adds a rather trivial context manager that lets you deduplicate repeated
arguments in directives, e.g.

```python
depends_on("py-x@1", when="@1", type=("build", "run"))
depends_on("py-x@2", when="@2", type=("build", "run"))
depends_on("py-x@3", when="@3", type=("build", "run"))
depends_on("py-x@4", when="@4", type=("build", "run"))
```

can be condensed to

```python
with default_args(type=("build", "run")):
    depends_on("py-x@1", when="@1")
    depends_on("py-x@2", when="@2")
    depends_on("py-x@3", when="@3")
    depends_on("py-x@4", when="@4")
```

The advantage is it's clear for humans, the downside it's less clear for type checkers due to type erasure.
2023-11-06 10:22:29 -08:00
Thomas-Ulrich
a5e6097af7
fix typo in packaging guide (#40853) 2023-11-03 09:56:13 +01:00
Massimiliano Culpo
16fa3b9f07
Cherry-picking virtual dependencies (#35322)
This PR makes it possible to select only a subset of virtual dependencies from a spec that _may_ provide more. To select providers, a syntax to specify edge attributes is introduced:
```
hdf5 ^[virtuals=mpi] mpich
```
With that syntax we can concretize specs like:
```console
$ spack spec strumpack ^[virtuals=mpi] intel-parallel-studio+mkl ^[virtuals=lapack] openblas
```

On `develop` this would currently fail with:
```console
$ spack spec strumpack ^intel-parallel-studio+mkl ^openblas
==> Error: Spec cannot include multiple providers for virtual 'blas'
    Requested 'intel-parallel-studio' and 'openblas'
```

In package recipes, virtual specs that are declared in the same `provides` directive need to be provided _together_. This means that e.g. `openblas`, which has:
```python
provides("blas", "lapack")
```
needs to provide both `lapack` and `blas` when requested to provide at least one of them.

## Additional notes

This capability is needed to model compilers. Assuming that languages are treated like virtual dependencies, we might want e.g. to use LLVM to compile C/C++ and Gnu GCC to compile Fortran. This can be accomplished by the following[^1]:
```
hdf5 ^[virtuals=c,cxx] llvm ^[virtuals=fortran] gcc
```

[^1]: We plan to add some syntactic sugar around this syntax, and reuse the `%` sigil to avoid having a lot of boilerplate around compilers.

Modifications:
- [x] Add syntax to interact with edge attributes from spec literals
- [x] Add concretization logic to be able to cherry-pick virtual dependencies
- [x] Extend semantic of the `provides` directive to express when virtuals need to be provided together
- [x] Add unit-tests and documentation
2023-11-01 23:35:23 -07:00
Harmen Stoppels
e5f3ffc04f
SetupContext.get_env_modifications fixes and documentation (#40683)
Call setup_dependent_run_environment on both link and run edges,
instead of only run edges, which restores old behavior.

Move setup_build_environment into get_env_modifications

Also call setup_run_environment on direct build deps, since their run
environment has to be set up.
2023-11-01 08:47:15 +01:00
Todd Gamblin
702a2250fa
docs: update license() docs with examples and links (#40598)
- [x] Add links to information people are going to want to know when adding license
      information to their packages (namely OSI licenses and SPDX identifiers).
- [x] Update the packaging docs for `license()` with Spack as an example for `when=`.
      After all, it's a dual-licensed package that changed once in the past.
- [x] Add link to https://spdx.org/licenses/ in the `spack create` boilerplate as well.
2023-10-30 18:54:31 -07:00
dependabot[bot]
f228c7cbcc
build(deps): bump black from 23.9.1 to 23.10.1 in /lib/spack/docs (#40680)
Bumps [black](https://github.com/psf/black) from 23.9.1 to 23.10.1.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.9.1...23.10.1)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-10-31 00:11:53 +01:00
Harmen Stoppels
195f965076
OCI buildcache (#38358)
Credits to @ChristianKniep for advocating the idea of OCI image layers
being identical to spack buildcache tarballs.

With this you can configure an OCI registry as a buildcache:

```console 
$ spack mirror add my_registry oci://user/image # Dockerhub

$ spack mirror add my_registry oci://ghcr.io/haampie/spack-test # GHCR

$ spack mirror set --push --oci-username ... --oci-password ... my_registry  # set login credentials
```

which should result in this config:

```yaml
mirrors:
  my_registry:
    url: oci://ghcr.io/haampie/spack-test
    push:
      access_pair: [<username>, <password>]
```

It can be used like any other registry

```
spack buildcache push my_registry [specs...]
```

It will upload the Spack tarballs in parallel, as well as manifest + config
files s.t. the binaries are compatible with `docker pull` or `skopeo copy`.

In fact, a base image can be added to get a _runnable_ image:

```console
$ spack buildcache push --base-image ubuntu:23.04 my_registry python
Pushed ... as [image]:python-3.11.2-65txfcpqbmpawclvtasuog4yzmxwaoia.spack

$ docker run --rm -it [image]:python-3.11.2-65txfcpqbmpawclvtasuog4yzmxwaoia.spack
```

which should really be a game changer for sharing binaries.

Further, all content-addressable blobs that are downloaded and verified
will be cached in Spack's download cache. This should make repeated
`push` commands faster, as well as `push` followed by a separate
`update-index` command.

An end to end example of how to use this in Github Actions is here:

**https://github.com/haampie/spack-oci-buildcache-example**


TODO:

- [x] Generate environment modifications in config so PATH is set up
- [x] Enrich config with Spack's `spec` json (this is allowed in the OCI specification)
- [x] When ^ is done, add logic to create an index in say `<image>:index` by fetching all config files (using OCI distribution discovery API)
- [x] Add logic to use object storage in an OCI registry in `spack install`.
- [x] Make the user pick the base image for generated OCI images.
- [x] Update buildcache install logic to deal with absolute paths in tarballs
- [x] Merge with `spack buildcache` command
- [x] Merge #37441 (included here)
- [x] Merge #39077 (included here)
- [x] #39187 + #39285
- [x] #39341
- [x] Not a blocker: #35737 fixes correctness run env for the generated container images

NOTE:

1. `oci://` is unfortunately taken, so it's being abused in this PR to mean "oci type mirror". `skopeo` uses `docker://` which I'd like to avoid, given that classical docker v1 registries are not supported.
2. this is currently `https`-only, given that basic auth is used to login. I _could_ be convinced to allow http, but I'd prefer not to, given that for a `spack buildcache push` command multiple domains can be involved (auth server, source of base image, destination registry). Right now, no urllib http handler is added, so redirects to https and auth servers with http urls will simply result in a hard failure.

CAVEATS:

1. Signing is not implemented in this PR. `gpg --clearsign` is not the nicest solution, since (a) the spec.json is merged into the image config, which must be valid json, and (b) it would be better to sign the manifest (referencing both config/spec file and tarball) using more conventional image signing tools
2. `spack.binary_distribution.push` is not yet implemented for the OCI buildcache, only `spack buildcache push` is. This is because I'd like to always push images + deps to the registry, so that it's `docker pull`-able, whereas in `spack ci` we really wanna push an individual package without its deps to say `pr-xyz`, while its deps reside in some `develop` buildcache.
3. The `push -j ...` flag only works for OCI buildcache, not for others
2023-10-27 15:30:04 +02:00
dependabot[bot]
6bd2dd032b
build(deps): bump pytest from 7.4.2 to 7.4.3 in /lib/spack/docs (#40697) 2023-10-25 20:58:53 +02:00
Tamara Dahlgren
cfc5363053
Docs: Update spec variant checks plus python quotes and string formatting (#40643) 2023-10-23 09:15:03 +02:00
Tamara Dahlgren
f915489c62
Docs: Add version range example to conditional dependencies (#40630)
* Docs: Add version range example to conditional dependencies

* Add when context manager example
2023-10-22 10:52:44 +02:00
dependabot[bot]
405de56c71
build(deps): bump mypy from 1.6.0 to 1.6.1 in /lib/spack/docs (#40603) 2023-10-19 23:03:48 +02:00
dependabot[bot]
4c1785d5f6
build(deps): bump urllib3 from 2.0.6 to 2.0.7 in /lib/spack/docs (#40583) 2023-10-19 23:02:51 +02:00
Scott Wittenburg
46c1a8e4c6
gitlab ci: Rework how mirrors are configured (#39939)
Improve how mirrors are used in gitlab ci, where we have until now thought
of them as only a string.

By configuring ci mirrors ahead of time using the proposed mirror templates,
and by taking advantage of the expressiveness that spack now has for mirrors,
this PR will allow us to easily switch the protocol/url we use for fetching
binary dependencies.

This change also deprecates some gitlab functionality and marks it for
removal in Spack 0.23:

    - arguments to "spack ci generate":
        * --buildcache-destination
        * --copy-to
    - gitlab configuration options:
        * enable-artifacts-buildcache
        * temporary-storage-url-prefix
2023-10-19 11:04:59 -05:00
Harmen Stoppels
294e659ae8
AutotoolsPackage / MakefilePackage: add gmake build dependency (#40380) 2023-10-18 19:56:54 +02:00
Aiden Grossman
2802013dc6
Add license directive (#39346)
This patch adds in a license directive to get the ball rolling on adding in license 
information about packages to spack. I'm primarily interested in just adding
license into spack, but this would also help with other efforts that people are
interested in such as adding license information to the ASP solve for 
concretization to make sure licenses are compatible.

Usage:

Specifying the specific license that a package is released under in a project's
`package.py` is good practice. To specify a license, find the SPDX identifier for
a project and then add it using the license directive:

```python
   license("<SPDX Identifier HERE>")
```

For example, for Apache 2.0, you might write:

```python
   license("Apache-2.0")
```

Note that specifying a license without a when clause makes it apply to all
versions and variants of the package, which might not actually be the case.
For example, a project might have switched licenses at some point or have
certain build configurations that include files that are licensed differently.
To account for this, you can specify when licenses should be applied. For
example, to specify that a specific license identifier should only apply
to versionup to and including 1.5, you could write the following directive:

```python
   license("MIT", when="@:1.5")
```
2023-10-18 03:58:19 -07:00
Harmen Stoppels
c9677b2465
Expand multiple build systems section (#39589)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-10-13 14:59:44 +02:00
Matthew Chan
8a0de10f60
containerize: update docs to activate env before using container templates (#40493) 2023-10-13 06:59:44 +00:00
dependabot[bot]
aa7dfdb5c7
build(deps): bump python-levenshtein in /lib/spack/docs (#40461)
Bumps [python-levenshtein](https://github.com/maxbachmann/python-Levenshtein) from 0.22.0 to 0.23.0.
- [Release notes](https://github.com/maxbachmann/python-Levenshtein/releases)
- [Changelog](https://github.com/maxbachmann/python-Levenshtein/blob/main/HISTORY.md)
- [Commits](https://github.com/maxbachmann/python-Levenshtein/compare/v0.22.0...v0.23.0)

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2023-10-12 14:38:33 +00:00
Massimiliano Culpo
3935e047c6
Remove deprecated "extra_instructions" option for containers (#40365) 2023-10-12 12:12:15 +02:00
dependabot[bot]
e3b71b32aa
build(deps): bump mypy from 1.5.1 to 1.6.0 in /lib/spack/docs (#40424)
Bumps [mypy](https://github.com/python/mypy) from 1.5.1 to 1.6.0.
- [Commits](https://github.com/python/mypy/compare/v1.5.1...v1.6.0)

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2023-10-11 12:35:41 +00:00
Harmen Stoppels
19202b2528
docs: update Spack prerequisites (#40381) 2023-10-09 13:41:36 +00:00
dependabot[bot]
83e9537f57
build(deps): bump python-levenshtein in /lib/spack/docs (#40220)
Bumps [python-levenshtein](https://github.com/maxbachmann/python-Levenshtein) from 0.21.1 to 0.22.0.
- [Release notes](https://github.com/maxbachmann/python-Levenshtein/releases)
- [Changelog](https://github.com/maxbachmann/python-Levenshtein/blob/main/HISTORY.md)
- [Commits](https://github.com/maxbachmann/python-Levenshtein/compare/v0.21.1...v0.22.0)

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2023-10-09 15:02:14 +02:00
Massimiliano Culpo
e20c05fcdf
Make "minimal" the default duplicate strategy (#39621)
* Allow branching out of the "generic build" unification set

For cases like the one in https://github.com/spack/spack/pull/39661
we need to relax rules on unification sets.

The issue is that, right now, nodes in the "generic build" unification
set are unified together with their build dependencies. This was done
out of caution to avoid the risk of circular dependencies, which would
ultimately cause a very slow solve.

For build-tools like Cython, however, the build dependencies is masked
by a long chain of "build, run" dependencies that belong in the
"generic build" unification space.

To allow splitting on cases like this, we relax the rule disallowing
branching out of the "generic build" unification set.

* Fix issue with pure build virtual dependencies

Pure build virtual dependencies were not accounted properly in the
list of possible virtuals. This caused some facts connecting virtuals
to the corresponding providers to not be emitted, and in the end
lead to unsat problems.

* Fixed a few issues in packages

py-gevent: restore dependency on py-cython@3
jsoncpp: fix typo in build dependency
ecp-data-vis-sdk: update spack.yaml and cmake recipe
py-statsmodels: add v0.13.5

* Make dependency on "blt" of type "build"
2023-10-06 10:24:21 +02:00
dependabot[bot]
f2230100ac
build(deps): bump urllib3 from 2.0.5 to 2.0.6 in /lib/spack/docs (#40286)
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.5 to 2.0.6.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/v2.0.5...2.0.6)

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2023-10-03 12:27:36 +02:00
Todd Gamblin
9e54134daf
docs: Replace package list with packages.spack.io (#40251)
For a long time, the docs have generated a huge, static HTML package list. It has some
disadvantages:

* It's slow to load
* It's slow to build
* It's hard to search

We now have a nice website that can tell us about Spack packages, and it's searchable so
users can easily find the one or two packages out of 7400 that they're looking for. We
should link to this instead of including a static package list page in the docs.

- [x] Replace package list link with link to packages.spack.io
- [x] Remove `package_list.html` generation from `conf.py`.
- [x] Add a new section for "Links" to the docs.
- [x] Remove docstring notes from contribution guide (we haven't generated RST
      for package docstrings for a while)
- [x] Remove referencese to `package-list` from docs.
2023-10-01 05:36:22 +02:00
Massimiliano Culpo
210d221357
Test package detection in a systematic way (#18175)
This PR adds a new audit sub-command to check that detection of relevant packages
is performed correctly in a few scenarios mocking real use-cases. The data for each 
package being tested is in a YAML file called detection_test.yaml alongside the 
corresponding package.py file.

This is to allow encoding detection tests for compilers and other widely used tools, 
in preparation for compilers as dependencies.
2023-09-29 10:24:42 +02:00
dependabot[bot]
37c48fc82c
build(deps): bump urllib3 from 2.0.4 to 2.0.5 in /lib/spack/docs (#40119)
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.4 to 2.0.5.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/2.0.4...v2.0.5)

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2023-09-24 17:35:48 +02:00
dependabot[bot]
74a6c48d96
build(deps): bump sphinx from 7.2.5 to 7.2.6 in /lib/spack/docs (#40029)
Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 7.2.5 to 7.2.6.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES.rst)
- [Commits](https://github.com/sphinx-doc/sphinx/compare/v7.2.5...v7.2.6)

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2023-09-15 09:51:51 +02:00
Massimiliano Culpo
c4e2d24ca9
Spec.tree: add type hints (#39948) 2023-09-13 11:53:14 +02:00
dependabot[bot]
28a3be3eca
build(deps): bump black from 23.7.0 to 23.9.1 in /lib/spack/docs (#39937)
Bumps [black](https://github.com/psf/black) from 23.7.0 to 23.9.1.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.7.0...23.9.1)

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2023-09-12 07:44:19 +02:00
dependabot[bot]
a4d2f8332f
build(deps): bump pytest from 7.4.1 to 7.4.2 in /lib/spack/docs (#39883)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.4.1 to 7.4.2.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/7.4.1...7.4.2)

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2023-09-08 08:16:19 +02:00
Tamara Dahlgren
007f02e06a
Docs/Packaging guide: Add BundlePackage (#39691)
* Docs/Packaging guide: Add BundlePackage
* Adjusted version ordering note to reflect convention.
2023-09-07 19:45:51 -07:00
dependabot[bot]
189cd59d13
build(deps): bump pytest from 7.4.0 to 7.4.1 in /lib/spack/docs (#39790)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.4.0 to 7.4.1.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/7.4.0...7.4.1)

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2023-09-05 09:51:41 +02:00
dependabot[bot]
ecb7ad493f
build(deps): bump sphinx from 7.2.4 to 7.2.5 in /lib/spack/docs (#39716)
Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 7.2.4 to 7.2.5.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES)
- [Commits](https://github.com/sphinx-doc/sphinx/compare/v7.2.4...v7.2.5)

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2023-08-31 10:40:33 +02:00
dependabot[bot]
ffddaabaa0
build(deps): bump sphinx from 7.2.3 to 7.2.4 in /lib/spack/docs (#39668)
Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 7.2.3 to 7.2.4.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES)
- [Commits](https://github.com/sphinx-doc/sphinx/compare/v7.2.3...v7.2.4)

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2023-08-29 14:45:06 +02:00
Peter Scheibel
95f78440f1
External ROCm: add example configuration (#39602)
* add an example of an external rocm configuration
* include more info
* generalize section to all GPU support
2023-08-26 15:46:25 -07:00
dependabot[bot]
ca1e4d54b5
build(deps): bump sphinx from 7.2.2 to 7.2.3 in /lib/spack/docs (#39603)
Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 7.2.2 to 7.2.3.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES)
- [Commits](https://github.com/sphinx-doc/sphinx/compare/v7.2.2...v7.2.3)

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2023-08-24 07:55:14 +02:00
Tamara Dahlgren
3f5f4cfe26
docs: API, f-string, and path updates to test section (#39584) 2023-08-23 09:22:25 +02:00
dependabot[bot]
afebc11742
Bump sphinx from 6.2.1 to 7.2.2 in /lib/spack/docs (#39502)
Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 6.2.1 to 7.2.2.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES)
- [Commits](https://github.com/sphinx-doc/sphinx/compare/v6.2.1...v7.2.2)

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2023-08-22 12:02:58 +02:00
dependabot[bot]
1d8ff7f742
Bump sphinx-rtd-theme from 1.2.2 to 1.3.0 in /lib/spack/docs (#39562)
Bumps [sphinx-rtd-theme](https://github.com/readthedocs/sphinx_rtd_theme) from 1.2.2 to 1.3.0.
- [Changelog](https://github.com/readthedocs/sphinx_rtd_theme/blob/master/docs/changelog.rst)
- [Commits](https://github.com/readthedocs/sphinx_rtd_theme/compare/1.2.2...1.3.0)

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2023-08-22 09:32:39 +02:00
dependabot[bot]
b19691d503
Bump mypy from 1.5.0 to 1.5.1 in /lib/spack/docs (#39478)
Bumps [mypy](https://github.com/python/mypy) from 1.5.0 to 1.5.1.
- [Commits](https://github.com/python/mypy/compare/v1.5.0...v1.5.1)

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2023-08-17 12:35:49 +02:00
dependabot[bot]
c764f9b1ab
build(deps): bump mypy from 1.4.1 to 1.5.0 in /lib/spack/docs (#39383)
Bumps [mypy](https://github.com/python/mypy) from 1.4.1 to 1.5.0.
- [Commits](https://github.com/python/mypy/compare/v1.4.1...v1.5.0)

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2023-08-11 08:01:34 +02:00
dependabot[bot]
37634f8b08
build(deps): bump pygments from 2.15.1 to 2.16.1 in /lib/spack/docs (#39365)
Bumps [pygments](https://github.com/pygments/pygments) from 2.15.1 to 2.16.1.
- [Release notes](https://github.com/pygments/pygments/releases)
- [Changelog](https://github.com/pygments/pygments/blob/master/CHANGES)
- [Commits](https://github.com/pygments/pygments/compare/2.15.1...2.16.1)

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2023-08-10 18:10:32 +02:00
dependabot[bot]
3f83ef6566
build(deps): bump flake8 from 6.0.0 to 6.1.0 in /lib/spack/docs (#39366)
Bumps [flake8](https://github.com/pycqa/flake8) from 6.0.0 to 6.1.0.
- [Commits](https://github.com/pycqa/flake8/compare/6.0.0...6.1.0)

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2023-08-10 05:34:33 -04:00
dependabot[bot]
554ce7f063
build(deps): bump sphinx-design from 0.4.1 to 0.5.0 in /lib/spack/docs (#39367)
Bumps [sphinx-design](https://github.com/executablebooks/sphinx-design) from 0.4.1 to 0.5.0.
- [Release notes](https://github.com/executablebooks/sphinx-design/releases)
- [Changelog](https://github.com/executablebooks/sphinx-design/blob/main/CHANGELOG.md)
- [Commits](https://github.com/executablebooks/sphinx-design/compare/v0.4.1...v0.5.0)

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2023-08-10 05:29:52 -04:00
dependabot[bot]
a3c7ad7669
build(deps): bump urllib3 from 2.0.3 to 2.0.4 in /lib/spack/docs (#39002)
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.3 to 2.0.4.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/2.0.3...2.0.4)

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2023-08-10 05:04:58 +00:00
Andrey Parfenov
b1e33ae37b
add info about devito and qe for intel env (#39357)
Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>
2023-08-09 12:47:35 -04:00
dependabot[bot]
deadb64206
build(deps): bump black from 23.1.0 to 23.7.0 in /lib/spack/docs (#38982)
Bumps [black](https://github.com/psf/black) from 23.1.0 to 23.7.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.1.0...23.7.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-08-09 17:19:49 +02:00
Harmen Stoppels
e51748ee8f
zlib-api: new virtual with zlib/zlib-ng as providers (#37372)
Introduces a new virtual zlib-api, which replaces zlib in most packages.

This allows users to switch to zlib-ng by default for better performance.
2023-08-09 09:22:58 -04:00
Jonathon Anderson
9aa3b4619b
containerize: ensure bootstrap images contain all system dependencies (#36818)
This also makes `spack bootstrap status` exit 1 if some dependency is missing
2023-08-09 09:46:59 +02:00
Adam J. Stewart
4eed832653
py-pyqt6: add new package (#32696) 2023-08-04 18:49:54 -05:00
Harmen Stoppels
03c0d74139
buildcache extractall: extract directly into spec.prefix (#37441)
- Run `mkdirp` on `spec.prefix`
- Extract directly into `spec.prefix`
  1. No need for `$store/tmp.xxx` where we extract the tarball directly, pray that it has one subdir `<name>-<version>-<hash>`, and then `rm -rf` the package prefix followed by `mv`.
  2. No need to clean up this temp dir in `spack clean`.
  3. Instead figure out package directory prefix from the tarball contents, and strip the tarinfo entries accordingly (kinda like tar --strip-components but more strict)
- Set package dir permissions
- Don't error during error handling when files cannot removed
- No need to "enrich" spec.json with this tarball-toplevel-path

After this PR, we can in fact tarball packages relative to `/` instead of `spec.prefix/..`, which makes it possible to use Spack tarballs as container layers, where relocation is impossible, and rootfs tarballs are expected.
2023-08-02 17:06:13 +02:00
Ashwin Kumar Karnad
399271832b
Fix typo: binary_caches.rst (#39064) 2023-07-24 15:09:34 +02:00
Ashwin Kumar Karnad
405f563909
binary_caches.rst: fix typo (#39030) 2023-07-21 10:39:53 +02:00
Harmen Stoppels
3fef586cfb
binary cache docs: remove redundant flag and comment (#38960) 2023-07-18 22:38:04 +02:00
Massimiliano Culpo
ad1fdcdf48
Pin Spack dev dependencies on RtD (#38950) 2023-07-18 18:37:04 +02:00
Xavier Delaruelle
8c7adbf8f3
modules: add support for conflict in lua modulefile (#36701)
Add support for conflict directives in Lua modulefile like done for Tcl
modulefile.

Note that conflicts are correctly honored on Lmod and Environment
Modules <4.2 only if mutually expressed on both modulefiles that
conflict with each other.

Migrate conflict code from Tcl-specific classes to the common part. Add
tests for Lmod and split the conflict test case in two.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-07-18 10:24:46 +02:00
Massimiliano Culpo
53ae969aa0
Lock, database and store don't need global configuration on construction (#33495)
Lock objects can now be instantiated independently,
without being tied to the global configuration. The
same is true for database and store objects.

The database __init__ method has been simplified to
take a single lock configuration object. Some common
lock configurations (e.g. NO_LOCK or NO_TIMEOUT) have
been named and are provided as globals.

The use_store context manager keeps the configuration
consistent by pushing and popping an internal scope.
It can also be tuned by passing extra data to set up
e.g. upstreams or anything else that might be related
to the store.
2023-07-17 16:51:04 +02:00
Michael Fink
c8026c3c87
Add path to MPI executables to ^mpi dependents (#35758) 2023-07-12 13:58:43 -05:00
Michael Kuhn
d5d0b8821c
installer: Improve status reporting (#37903)
Refactor `TermTitle` into `InstallStatus` and use it to show progress
information both in the terminal title as well as inline. This also
turns on the terminal title status by default.

The inline output will look like the following after this change:
```
==> Installing m4-1.4.19-w2fxrpuz64zdq63woprqfxxzc3tzu7p3 [4/4]
```
2023-07-12 08:54:45 +02:00
Andrey Parfenov
ae00d7c358
add info about spack env from spack-configs for oneAPI build tools (#38751)
Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>
2023-07-07 03:47:54 +00:00
Adam J. Stewart
45838cee0b
Drop Python 2 super syntax (#38718) 2023-07-05 09:04:29 -05:00
Adam J. Stewart
63576275be
SIPPackage: documentation fix (#38672) 2023-07-02 11:30:08 +02:00
Gurkirat Singh
69a5c55702
docs: add quotes around some values in a YAML example (#38412) 2023-06-16 10:29:09 +02:00
dependabot[bot]
6979d6a96f
build(deps): bump python-levenshtein in /lib/spack/docs (#38339)
Bumps [python-levenshtein](https://github.com/maxbachmann/python-Levenshtein) from 0.21.0 to 0.21.1.
- [Release notes](https://github.com/maxbachmann/python-Levenshtein/releases)
- [Changelog](https://github.com/maxbachmann/python-Levenshtein/blob/main/HISTORY.md)
- [Commits](https://github.com/maxbachmann/python-Levenshtein/compare/v0.21.0...v0.21.1)

---
updated-dependencies:
- dependency-name: python-levenshtein
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-06-14 13:03:15 +02:00
Harmen Stoppels
da45073ef9
buildcache: remove deprecated api (#37246)
The API was deprecated in v0.20 and is slated for removal in v0.21
2023-06-12 14:33:26 +02:00
Christopher Christofi
7fa3c7f0fa
Fix typo in example code block (#38318) 2023-06-11 22:12:36 -04:00
dependabot[bot]
7896625919
build(deps): bump urllib3 from 2.0.2 to 2.0.3 in /lib/spack/docs (#38244)
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.2 to 2.0.3.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/2.0.2...2.0.3)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-06-11 13:35:22 -05:00
dependabot[bot]
fb43cb8166
build(deps): bump sphinx-rtd-theme in /lib/spack/docs (#38245)
Bumps [sphinx-rtd-theme](https://github.com/readthedocs/sphinx_rtd_theme) from 1.2.1 to 1.2.2.
- [Changelog](https://github.com/readthedocs/sphinx_rtd_theme/blob/master/docs/changelog.rst)
- [Commits](https://github.com/readthedocs/sphinx_rtd_theme/compare/1.2.1...1.2.2)

---
updated-dependencies:
- dependency-name: sphinx-rtd-theme
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-06-11 13:35:03 -05:00
Christopher Kotfila
785c1a2070
Add documentation about package signing model (#30939)
Co-authored-by: Scott Wittenburg <scott.wittenburg@kitware.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-06-07 23:05:44 +02:00
Jonathon Anderson
f41446258a
containers: don't install epel-release on Fedora (#37766) 2023-06-06 21:50:46 +02:00
Massimiliano Culpo
e483762015
Update RtD and Sphinx configuration (#38046) 2023-06-05 17:39:11 +02:00
Xavier Delaruelle
6c42d2b7f7
modules: improve default naming scheme (#37808)
Change default naming scheme for tcl modules for a more user-friendly
experience. 

Change from flat projection to "per software name" projection.

Flat naming scheme restrains module selection capabilities. The
`{name}/{version}...` scheme make possible to use user-friendly
mechanisms:

* implicit defaults (`module load git`)
* extended default (`module load git/2`)
* advanced version specifiers (`module load git@2:`)
2023-05-28 10:06:30 +02:00
Yoshiaki Senda
d96406a161
Add recently added Spack Docker Images to documentation (#37732)
Signed-off-by: Yoshiaki Senda <yoshiaki@live.it>
2023-05-17 08:48:27 +02:00
Greg Becker
a2a6e65e27
concretizer: don't change concrete environments without --force (#37438)
If a user does not explicitly `--force` the concretization of an entire environment,
Spack will try to reuse the concrete specs that are already in the lockfile.

---------

Co-authored-by: becker33 <becker33@users.noreply.github.com>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2023-05-14 13:36:03 +02:00
Tamara Dahlgren
9a37c8fcb1
Stand-alone testing: make recipe support and processing spack-/pytest-like (#34236)
This is a refactor of Spack's stand-alone test process to be more spack- and pytest-like. 

It is more spack-like in that test parts are no longer "hidden" in a package's run_test()
method and pytest-like in that any package method whose name starts test_ 
(i.e., a "test" method) is a test part. We also support the ability to embed test parts in a
test method when that makes sense.

Test methods are now implicit test parts. The docstring is the purpose for the test part. 
The name of the method is the name of the test part. The working directory is the active
spec's test stage directory. You can embed test parts using the test_part context manager.

Functionality added by this commit:
* Adds support for multiple test_* stand-alone package test methods, each of which is 
   an implicit test_part for execution and reporting purposes;
* Deprecates package use of run_test();
* Exposes some functionality from run_test() as optional helper methods;
* Adds a SkipTest exception that can be used to flag stand-alone tests as being skipped;
* Updates the packaging guide section on stand-alone tests to provide more examples;
* Restores the ability to run tests "inherited" from provided virtual packages;
* Prints the test log path (like we currently do for build log paths);
* Times and reports the post-install process (since it can include post-install tests);
* Corrects context-related error message to distinguish test recipes from build recipes.
2023-05-10 11:34:54 +02:00
Massimiliano Culpo
0139288ced
Add a "requires" directive, extend functionality of package requirements (#36286)
Add a "require" directive to packages, which functions exactly like
requirements specified in packages.yaml (uses the same fact-generation
logic); update both to allow making the requirement conditional.

* Packages may now use "require" to add constraints. This can be useful
  for something like "require(%gcc)" (where before we had to add a
  conflict for every compiler except gcc).
* Requirements (in packages.yaml or in a "require" directive) can be
  conditional on a spec, e.g. "require(%gcc, when=@1.0.0)" (version
  1.0.0 can only build with gcc).
* Requirements may include a message which clarifies why they are needed.
  The concretizer assigns a high priority to errors which generate these
  messages (in particular over errors for unsatisfied requirements that
  do not produce messages, but also over a number of more-generic
  errors).
2023-05-08 10:12:26 -07:00
Tamara Dahlgren
374264f610
Packaging Guide: build-time test updates: option and test logs (#37093)
* Packaging Guide: build-time test updates: option and test logs
* Fix a couple of typos
2023-05-05 22:19:06 -06:00
Harmen Stoppels
fa7719a031
Improve version, version range, and version list syntax and behavior (#36273)
## Version types, parsing and printing

- The version classes have changed: `VersionBase` is removed, there is now a
  `ConcreteVersion` base class. `StandardVersion` and `GitVersion` both inherit
  from this.

- The public api (`Version`, `VersionRange`, `ver`) has changed a bit:
  1. `Version` produces either `StandardVersion` or `GitVersion` instances.
  2. `VersionRange` produces a `ClosedOpenRange`, but this shouldn't affect the user.
  3. `ver` produces any of `VersionList`, `ClosedOpenRange`, `StandardVersion`
     or `GitVersion`.

- No unexpected type promotion, so that the following is no longer an identity:
  `Version(x) != VersionRange(x, x)`.

- `VersionList.concrete` now returns a version if it contains only a single element
  subtyping `ConcreteVersion` (i.e. `StandardVersion(...)` or `GitVersion(...)`)

- In version lists, the parser turns `@x` into `VersionRange(x, x)` instead
  of `Version(x)`.

- The above also means that `ver("x")` produces a range, whereas
  `ver("=x")` produces a `StandardVersion`. The `=` is part of _VersionList_
  syntax.

- `VersionList.__str__` now outputs `=x.y.z` for specific version entries,
  and `x.y.z` as a short-hand for ranges `x.y.z:x.y.z`.

- `Spec.format` no longer aliases `{version}` to `{versions}`, but pulls the
  concrete version out of the list and prints that -- except when the list is
  is not concrete, then is falls back to `{versions}` to avoid a pedantic error.
  For projections of concrete specs, `{version}` should be used to render
  `1.2.3` instead of `=1.2.3` (which you would get with `{versions}`).
  The default `Spec` format string used in `Spec.__str__` now uses
  `{versions}` so that `str(Spec(string)) == string` holds.

## Changes to `GitVersion`

- `GitVersion` is a small wrapper around `StandardVersion` which enriches it
   with a git ref. It no longer inherits from it.

- `GitVersion` _always_ needs to be able to look up an associated Spack version
  if it was not assigned (yet). It throws a `VersionLookupError` whenever `ref_version`
  is accessed but it has no means to look up the ref; in the past Spack would
  not error and use the commit sha as a literal version, which was incorrect.
   
- `GitVersion` is never equal to `StandardVersion`, nor is satisfied by it. This
  is such that we don't lose transitivity. This fixes the following bug on `develop`
  where `git_version_a == standard_version == git_version_b` does not imply
  `git_version_a == git_version_b`. It also ensures equality always implies equal
  hash, which is also currently broken on develop; inclusion tests of a set of
  versions + git versions would behave differently from inclusion tests of a
  list of the same objects.

- The above means `ver("ref=1.2.3) != ver("=1.2.3")` could break packages that branch
  on specific versions, but that was brittle already, since the same happens with
  externals: `pkg@1.2.3-external` suffixes wouldn't be exactly equal either. Instead,
  those checks should be `x.satisfies("@1.2.3")` which works both for git versions and
  custom version suffixes.

- `GitVersion` from commit will now print as `<hash>=<version>` once the
  git ref is resolved to a spack version. This is for reliability -- version is frozen
  when added to the database and queried later. It also improves performance
  since there is no need to clone all repos of all git versions after `spack clean -m`
  is run and something queries the database, triggering version comparison, such
  as potentially reuse concretization.

- The "empty VerstionStrComponent trick" for `GitVerison` is dropped since it wasn't
  representable as a version string (by design). Instead, it's replaced by `git`,
  so you get `1.2.3.git.4` (which reads 4 commits after a tag 1.2.3). This means
  that there's an edge case for version schemes `1.1.1`, `1.1.1a`, since the
  generated git version `1.1.1.git.1` (1 commit after `1.1.1`) compares larger
  than `1.1.1a`, since `a < git` are compared as strings. This is currently a
  wont-fix edge case, but if really required, could be fixed by special casing
  the `git` string.

- Saved, concrete specs (database, lock file, ...) that only had a git sha as their
  version, but have no means to look the effective Spack version anymore, will
  now see their version mapped to `hash=develop`. Previously these specs
  would always have their sha literally interpreted as a version string (even when
  it _could_ be looked up). This only applies to databases, lock files and spec.json
  files created before Spack 0.20; after this PR, we always have a Spack version
  associated to the relevant GitVersion).

- Fixes a bug where previously `to_dict` / `from_dict` (de)serialization would not
  reattach the repo to the GitVersion, causing the git hash to be used as a literal
  (bogus) version instead of the resolved version. This was in particularly breaking
  version comparison in the build process on macOS/Windows.


## Installing or matching specific versions

- In the past, `spack install pkg@3.2` would install `pkg@=3.2` if it was a
  known specific version defined in the package, even when newer patch releases
  `3.2.1`, `3.2.2`, `...` were available. This behavior was only there because
  there was no syntax to distinguish between `3.2` and `3.2.1`. Since there is
  syntax for this now through `pkg@=3.2`, the old exact matching behavior is
  removed. This means that `spack install pkg@3.2` constrains the `pkg` version
  to the range `3.2`, and `spack install pkg@=3.2` constrains it to the specific
  version `3.2`.

- Also in directives such as `depends_on("pkg@2.3")` and their when
  conditions `conflicts("...", when="@2.3")` ranges are ranges, and specific
  version matches require `@=2.3.`.

- No matching version: in the case `pkg@3.2` matches nothing, concretization
  errors. However, if you run `spack install pkg@=3.2` and this version
  doesn't exist, Spack will define it; this allows you to install non-registered
  versions.

- For consistency, you can now do `%gcc@10` and let it match a configured
  `10.x.y` compiler. It errors when there is no matching compiler.
  In the past it was interpreted like a specific `gcc@=10` version, which
  would get bootstrapped.

- When compiler _bootstrapping_ is enabled, `%gcc@=10.2.0` can be used to
  bootstrap a specific compiler version.

## Other changes

- Externals, compilers, and develop spec definitions are backwards compatible.
  They are typically defined as `pkg@3.2.1` even though they should be
  saying `pkg@=3.2.1`. Spack now transforms `pkg@3` into `pkg@=3` in those cases.

- Finally, fix strictness of `version(...)` directive/declaration. It just does a simple
  type check, and now requires strings/integers. Floats are not allowed because
  they are ambiguous `str(3.10) == "3.1"`.
2023-05-05 22:04:41 -06:00
Eric Berquist
b2a8e8734e
Fix typos in packaging guide (#37460) 2023-05-05 22:08:58 +00:00
Harmen Stoppels
9ef062fcca
Add spack buildcache push (alias to buildcache create) (#34861)
`spack buildcache create` is a misnomer cause it's the only way to push to
an existing buildcache (and it in fact calls binary_distribution.push).

Also we have `spack buildcache update-index` but for create the flag is
`--rebuild-index`, which is confusing (and also... why "rebuild"
something if the command is "create" in the first place, that implies it
wasn't there to begin with).

So, after this PR, you can use either

```
spack buildcache create --rebuild-index
```

or

```
spack buildcache push --update-index
```

Also, alias `spack buildcache rebuild-index` to `spack buildcache
update-index`.
2023-05-05 19:54:26 +02:00
Chris Green
d600aef4f4
Relax environment manifest filename requirements and lockfile identification criteria (#37413)
* Relax filename requirements and lockfile identification criteria

* Tests

* Update function docs and help text

* Update function documentation

* Update Sphinx documentation

* Adjustments per https://github.com/spack/spack/pull/37413#pullrequestreview-1413540132

* Further tweaks per https://github.com/spack/spack/pull/37413#pullrequestreview-1413971254

* Doc fixes per https://github.com/spack/spack/pull/37413#issuecomment-1535976068
2023-05-05 07:40:49 -05:00
Greg Becker
c3593e5b48
Allow choosing the name of the packages subdirectory in repositories (#36643)
Co-authored-by: becker33 <becker33@users.noreply.github.com>
2023-05-04 23:36:21 +02:00
Massimiliano Culpo
16613408e4
Place an upper bound on urllib3 to build docs (#37433) 2023-05-04 19:40:43 +02:00
Bryce Torcello
541cdbbef2
docs: update RHEL/CentOS system prerequisites (#36720) 2023-05-03 19:04:16 +02:00
Egbert Eich
1491d8471d
Add 'zypper' to the valid container.os_packages options (#36681)
Signed-off-by: Egbert Eich <eich@suse.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: e4t <e4t@users.noreply.github.com>
2023-05-03 13:05:14 +02:00
Harmen Stoppels
d51af675ef
make version(...) kwargs explicit (#36998)
- [x] Replace `version(ver, checksum=None, **kwargs)` signature with
      `version(ver, checksum=None, *, sha256=..., ...)` explicitly listing all arguments.
- [x] Fix various issues in packages:
  - `tags` instead of `tag`
  - `default` instead of `preferred`
  - `sha26` instead of `sha256`
  - etc

Also, use `sha256=...` consistently.

Note: setting `sha256` currently doesn't validate the checksum length, so you could do
`sha256="a"*32` and it would get checked as `md5`... but that's something for another PR.
2023-04-19 14:17:47 -07:00
Todd Gamblin
b260234faf editing: add higher-precedence SPACK_EDITOR environment variable
Other tools like git support `GIT_EDITOR` which takes higher precedence than the
standard `VISUAL` or `EDITOR` variables. This adds similar support for Spack, in the
`SPACK_EDITOR` env var.

- [x] consolidate editor code from hooks into `spack.util.editor`
- [x] add more editor tests
- [x] add support for `SPACK_EDITOR`
- [x] add a documentation section for controlling the editor and reference it
2023-04-18 16:23:00 -07:00
Todd Gamblin
6845f41d67
Revert addition of SPACK_EDITOR pending review.
This reverts commit d8a26905ee.
This reverts commit 1ee049ccc3.

These were spuriously pushed to `develop`.
2023-04-18 03:57:24 -07:00
Todd Gamblin
1ee049ccc3
editing: add higher-precedence SPACK_EDITOR environment variable
Other tools like git support `GIT_EDITOR` which takes higher precedence than the
standard `VISUAL` or `EDITOR` variables. This adds similar support for Spack, in the
`SPACK_EDITOR` env var.

- [x] consolidate editor code from hooks into `spack.util.editor`
- [x] add more editor tests
- [x] add support for `SPACK_EDITOR`
- [x] add a documentation section for controlling the editor and reference it
2023-04-18 03:42:56 -07:00
kwryankrattiger
b2310f9e64
Ci backwards compat (#36045)
* CI: Fixup docs for bootstrap.

* CI: Add compatibility shim

* Add an update method for CI

Update requires manually renaming section to `ci`. After
this patch, updating and using the deprecated `gitlab-ci` section
should be possible.

* Fix typos in generate warnings

* Fixup CI schema validation

* Add unit tests for legacy CI

* Add deprecated CI stack for continuous testing

* Allow updating gitlab-ci section directly with env update

* Make warning give good advice for updating gitlab-ci

* Fix typo in CI name

* Remove white space

* Remove unneeded component of deprected-ci
2023-04-10 16:46:45 -05:00
Massimiliano Culpo
f91968cf6f
Improve Dockerfile recipe generation (#35187)
- Update default image to Ubuntu 22.04 (previously was still Ubuntu 18.04)
- Optionally use depfiles to install the environment within the container
- Allow extending Dockerfile Jinja2 template
- Allow extending Singularity definition file Jinja2 template
- Deprecate previous options to add extra instructions
2023-04-03 21:05:19 +02:00
Xavier Delaruelle
47d710dc4d
modules tcl: switch default all:autoload from none to direct (#36269)
Since environment-modules has support for autoloading since 4.2,
and Spack-builds of it enable it by default, use the same autoload
default for tcl as lmod.
2023-03-23 07:49:17 +01:00
Leopold Talirz
311d3be18e
docs: mention cuda multi-arch capability (#36321) 2023-03-22 16:52:53 -04:00
Adam J. Stewart
5dc8ed2694
Remove unused ignore parameter of extends() directive (#35588)
The `ignore` parameter was only used for `spack activate/deactivate`, and it isn't used
by Spack Environments which have their own handling of file conflicts. We should remove it.

Everything that handles `ignore=` was removed in #29317 and included in 0.19, when we
removed `spack activate` and `spack deactivate` in favor of environments.  So all of these
usages removed here were already being ignored by Spack.
2023-03-20 07:22:59 -04:00
Xavier Delaruelle
df97827a7b
Fix case spelling for Lmod and Tcl (#36215) 2023-03-19 01:42:50 +00:00
Shahzeb Siddiqui
b5f3b5bf78
Remove leftover command from documentation (#36116)
The command refers to dotkit files, which are not supported since a long time.
2023-03-14 20:48:28 -04:00
kwryankrattiger
f3595da600
CI boilerplate reduction (#34272)
* CI configuration boilerplate reduction and refactor

Configuration:
- New notation for list concatenation (prepend/append)
- New notation for string concatenation (prepend/append)
- Break out configuration files for: ci.yaml, cdash.yaml, view.yaml
- Spack CI section refactored to improve self-consistency and
composability
  - Scripts are now lists of lists and/or lists of strings
  - Job attributes are now listed under precedence ordered list that are
  composed/merged using Spack config merge rules.
  - "service-jobs" are identified explicitly rather than as a batch

CI:
- Consolidate common, platform, and architecture configurations for all CI stacks into composable configuration files
- Make padding consistent across all stacks (256)
- Merge all package -> runner mappings to be consistent across all
stacks

Unit Test:
- Refactor CI module unit-tests for refactor configuration

Docs:
- Add docs for new notations in configuration.rst
- Rewrite docs on CI pipelines to be consistent with refactored CI
workflow

* Script verbose environ, dev bootstrap

* Port #35409
2023-03-10 12:25:35 -07:00
Tamara Dahlgren
b06648eb64
docs: added platform conflicts example, fix quotes (#35771) 2023-03-08 10:10:01 +01:00
Adam J. Stewart
146464e063
Docs: fix link to PythonPackage docs (#35725) 2023-03-01 11:14:05 +01:00
psakievich
b8d15e816b
Allow users to specify root env dir (#32836)
* Allow users to specify root env dir

Environments managed by spack have some advantages over anonymous Environments
but they are tucked away inside spack's directory tree. This PR gives
users the ability to specify where the environments should live.

See #32823

This is also taken as an opportunity to ensure that all references are to "managed environments",
rather than "named environments". Prior to this PR some references to the latter persisted.

Co-authored-by: Tom Scogland <scogland1@llnl.gov>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Co-authored-by: Gregory Becker <becker33@llnl.gov>
2023-02-22 00:37:14 +00:00
Adam J. Stewart
7c01d3ba35
Fix broken links in docs (#35582) 2023-02-20 09:21:18 +01:00
Adam J. Stewart
603569e321
Style: black 23, skip magic trailing comma (#35351)
* Style: black 23, skip magic trailing commas

* isort should use same line length as black

* Fix unused import

* Update version of black used in CI

* Update new packages

* Update new packages
2023-02-16 23:06:12 -06:00
Massimiliano Culpo
cc2ae9f270
Add a maintainers directive (#35083)
fixes #34879

This commit adds a new maintainer directive,
which by default extend the list of maintainers
for a given package.

The directive is backward compatible with the current
practice of having a "maintainers" list declared at
the class level.
2023-01-27 07:51:24 +01:00
John W. Parent
a424f7f173
Identify Windows support with tags (#35027)
All packages with explicit Windows support can be found with
`spack list --tags=windows`.

This also removes the documentation which explicitly lists
supported packages on Windows (which is currently out of date and
is now unnecessary with the added tags).

Note that if a package does not appear in this list, it *may*
still build on Windows, but it likely means that no explicit
attempt has been made to support it.
2023-01-20 13:32:28 -08:00
Harmen Stoppels
a357a39963
depfile: --make-target-prefix -> --make-prefix (#35009)
Since SPACK_PACKAGE_IDS is now also "namespaced" with <prefix>, it makes
more sense to call the flag `--make-prefix` and alias the old flag
`--make-target-prefix` to it.
2023-01-19 14:58:34 +01:00
Harmen Stoppels
fce95e2efb
license year bump (#34921)
* license bump year
* fix black issues of modified files
* mypy
* fix 2021 -> 2023
2023-01-18 14:30:17 -08:00
Harmen Stoppels
f050b1cf78
depfile: variable with all identifiers (#34678)
With the new variable [prefix/]SPACK_PACKAGE_IDS you can conveniently execute
things after each successful install.

For example push just-built packages to a buildcache

```
SPACK ?= spack
export SPACK_COLOR = always
MAKEFLAGS += -Orecurse
MY_BUILDCACHE := $(CURDIR)/cache

.PHONY: all clean

all: push

ifeq (,$(filter clean,$(MAKECMDGOALS)))
include env.mk
endif

# the relevant part: push has *all* example/push/<pkg identifier> as prereqs
push: $(addprefix example/push/,$(example/SPACK_PACKAGE_IDS))
	$(SPACK) -e . buildcache update-index --directory $(MY_BUILDCACHE)
	$(info Pushed everything, yay!)

# and each example/push/<pkg identifier> has the install target as prereq,
# and the body can use target local $(HASH) and $(SPEC) variables to do
# things, such as pushing to a build cache
example/push/%: example/install/%
	@mkdir -p $(dir $@)
	$(SPACK) -e . buildcache create --allow-root --only=package --unsigned --directory $(MY_BUILDCACHE) /$(HASH) # push $(SPEC)
	@touch $@

spack.lock: spack.yaml
	$(SPACK) -e . concretize -f

env.mk: spack.lock
	$(SPACK) -e . env depfile -o $@ --make-target-prefix example

clean:
	rm -rf spack.lock env.mk example/
``
2023-01-18 19:19:46 +01:00
Harmen Stoppels
3489cc0a9b
Refer to mirrors by name, path, or url (#34891)
With this change we get the invariant that `mirror.fetch_url` and
`mirror.push_url` return valid URLs, even when the backing config
file is actually using (relative) paths with potentially `$spack` and
`$env` like variables.

Secondly it avoids expanding mirror path / URLs too early,
so if I say `spack mirror add name ./path`, it stays `./path` in my
config. When it's retrieved through MirrorCollection() we
exand it to say `file://<env dir>/path` if `./path` was set in an
environment scope.

Thirdly, the interface is simplified for the relevant buildcache
commands, so it's more like `git push`:

```
spack buildcache create [mirror] [specs...]
```

`mirror` is either a mirror name, a path, or a URL.

Resolving the relevant mirror goes as follows:
    
- If it contains either / or \ it is used as an anonymous mirror with
   path or url.
- Otherwise, it's interpreted as a named mirror, which must exist.

This helps to guard against typos, e.g. typing `my-mirror` when there
is no such named mirror now errors with:

```
$ spack -e . buildcache create my-mirror
==> Error: no mirror named "my-mirror". Did you mean ./my-mirror?
```

instead of creating a directory in the current working directory. I
think this is reasonable, as the alternative (requiring that a local dir
exists) feels a bit pendantic in the general case -- spack is happy to
create the build cache dir when needed, saving a `mkdir`.

The old (now deprecated) format will still be available in Spack 0.20,
but is scheduled to be removed in 0.21:

```
spack buildcache create (--directory | --mirror-url | --mirror-name) [specs...]
```

This PR also touches `tmp_scope` in tests, because it didn't really
work for me, since spack fixes the possible --scope values once and
for all across tests, so tests failed when run out of order.
2023-01-16 10:14:41 -08:00
Jack Morrison
add8022490
Fix incorrect configuration file name in docs (#34925) 2023-01-16 14:52:08 +01:00
Tamara Dahlgren
c0b458e38a
Documentation: Add installation policy to packaging guide (#34878) 2023-01-12 11:01:35 -08:00
Massimiliano Culpo
6a44a146af Fix building docs 2023-01-04 09:43:04 -08:00
Massimiliano Culpo
86378502f9 Use "vendoring" to manage 3rd party dependencies 2023-01-04 09:43:04 -08:00
Massimiliano Culpo
3d961b9a1f
spack graph: rework to use Jinja templates and builders (#34637)
`spack graph` has been reworked to use:

- Jinja templates
- builder objects to construct the template context when DOT graphs are requested. 

This allowed to add a new colored output for DOT graphs that highlights both
the dependency types and the nodes that are needed at runtime for a given spec.
2022-12-27 15:25:53 +01:00
Alec Scott
3279ee7068
Add --fresh to docs to actually upgrade spack environments (#34433) 2022-12-22 11:19:24 +00:00