Commit Graph

197 Commits

Author SHA1 Message Date
kwryankrattiger
229ee7cad9
Paraview rocm (#34790)
* paraview: add `rocm` variant

This conflicts with CUDA and requires at least ParaView 5.11.0. More
dependencies are also needed.

* E4S: Add ParaView for ROCm and CUDA stacks

* DAV SDK: Update ParaView version and GPU variants

* Verify using hipcc vs amdclang++ for newer hip

Co-authored-by: Ben Boeckel <ben.boeckel@kitware.com>
2023-01-13 12:41:57 -06:00
Mike VanDenburgh
ea6608edde
Bump memory requests for e4s/ml generate jobs (#34648) 2023-01-11 10:41:42 -07:00
eugeneswalker
9d70f6e6c7
protected runner jobs at uo: trust e4s-uo signing key (#34828) 2023-01-10 18:18:38 -07:00
Scott Wittenburg
8f6f77ac9f
gitlab ci: fix tags for pipeline generation jobs (#34789)
Gitlab does not merge lists when a job extends two other definitions
that include the same list (e.g. tags).  Also, it merges dictionaries
as long as the keys are distinct, but just takes the last mentioned
value when there are key collisions.

This change makes sure that when different tags are needed by a
pipeline, the ones we want are actually provided.  It also changes
the example stack to better follow this pattern so we do not lead
developers astray in the future.
2023-01-10 10:06:26 -07:00
Wileam Y. Phan
0f7f600d1f
Add CUDA 12.0 (#34664) 2023-01-10 11:51:23 +01:00
eugeneswalker
9283a94ee4
e4s ci: use 2023-01-01 runner image (#34827) 2023-01-10 10:47:28 +00:00
Harmen Stoppels
b9f48da560
e4s: move default values for rocm/cuda arch into packags:all:variants (#34772) 2023-01-04 16:09:14 +01:00
Adam J. Stewart
eb67497020
ML CI: Linux x86_64 (#34299)
* ML CI: Linux x86_64

* Update comments

* Rename again

* Rename comments

* Update to match other arches

* No compiler

* Compiler was wrong anyway

* Faster TF
2022-12-22 11:31:40 -06:00
eugeneswalker
7e836b925d
e4s: disable mac stack due to binary relocation issue#32571 (#34560) 2022-12-17 10:53:15 +00:00
Zack Galbreath
aa8e1ba606
gitlab ci: more resources for slow builds (#34505) 2022-12-15 14:35:54 -07:00
Scott Wittenburg
675afd884d
gitlab ci: more resources for paraview and py-torch (#34412) 2022-12-09 11:58:37 -07:00
Andrew W Elble
588d2e295f
py-alphafold: update to 2.2.4, update dependencies (#33876)
* py-alphafold: update to 2.2.4, update dependencies

* style
2022-12-02 22:12:06 +00:00
eugeneswalker
f452741e3d
e4s ci: use 2022-12-01 runner images (#34212) 2022-11-30 09:52:30 -08:00
eugeneswalker
99b68e646d
e4s ci: hpx: set max_cpu_count=512 (#33977) 2022-11-30 09:16:57 -08:00
kwryankrattiger
33422acef0
CI: Update Data and Vis SDK Stack (#34009)
* CI: Update Data and Vis SDK Stack

* Update image to match target deployments (E4S)
* Enable all packages
* Test supported variants of ParaView and VisIt

* Sensei: Update Python hint for newer cmake

* Sensei: add Python3 hint
2022-11-29 14:49:55 -07:00
eugeneswalker
587488882a
e4s ci: add hdf5-vol-async; remove expired comments (#34110) 2022-11-28 19:35:42 +00:00
kwryankrattiger
5d2c9636ff
E4S: Conservatively add ecp-data-vis-sdk (#33621)
* E4S: Conservatively add ecp-data-vis-sdk

* Remove ascent from CUDA SDK stack to stop hanging on Dray

* Adios2: Newer FindPython uses Python_EXECUTABLE
2022-11-23 11:01:30 -08:00
Harmen Stoppels
90fb16033e
gitlab: report load in generate job (#33888) 2022-11-15 13:21:21 +01:00
Harmen Stoppels
f332ac6d21
More jobs in Gitlab CI (#33688)
Use at most 32 jobs when available.
2022-11-08 12:53:11 +01:00
Adam J. Stewart
0f32f7d0e9
py-transformers: add v4.24.0 (#33716)
* py-transformers: add v4.24.0

* Internet access still required
2022-11-05 12:38:49 -05:00
Massimiliano Culpo
ace8c74e20
Revert "gitlab: when_possible -> false (#33443)" (#33552)
This reverts commit b1559cc831.
2022-10-31 13:31:57 -07:00
eugeneswalker
999c460b1e
e4s ci: add mfem +rocm (#31604) 2022-10-29 23:32:46 +00:00
Harmen Stoppels
fa0432c521
gitlab ci: patched make 4.3.0 (#33583) 2022-10-28 14:38:57 +02:00
Harmen Stoppels
df1d233573
Don't fail over cpuinfo (#33546) 2022-10-27 11:14:09 +02:00
Harmen Stoppels
34f9394732
gitlab ci: show build machine info (#33523) 2022-10-26 20:31:16 +02:00
Massimiliano Culpo
30c9ff50dd
Allow for packages with multiple build-systems (#30738)
This commit extends the DSL that can be used in packages
to allow declaring that a package uses different build-systems
under different conditions.

It requires each spec to have a `build_system` single valued
variant. The variant can be used in many context to query, manipulate
or select the build system associated with a concrete spec.

The knowledge to build a package has been moved out of the
PackageBase hierarchy, into a new Builder hierarchy. Customization
of the default behavior for a given builder can be obtained by
coding a new derived builder in package.py.

The "run_after" and "run_before" decorators are now applied to
methods on the builder. They can also incorporate a "when="
argument to specify that a method is run only when certain
conditions apply.

For packages that do not define their own builder, forwarding logic
is added between the builder and package (methods not found in one
will be retrieved from the other); this PR is expected to be fully
backwards compatible with unmodified packages that use a single
build system.
2022-10-26 20:17:32 +02:00
Harmen Stoppels
a2520e80c0
gitlab ci: install binary deps faster (#33248)
* Fast Gitlab CI job setup, and better legibility

* Use a non-broken, recent GNU Make
2022-10-26 09:19:24 +02:00
Harmen Stoppels
d361378553
Improve legibility of Gitlab CI (#33482)
Use --backtrace in ci instead of --debug to reduce verbosity
and don't show log on error, since log is already printed
2022-10-25 12:21:34 +02:00
eugeneswalker
baa21d664b
e4s ci: use an appropriate name for cdash build group name (#33494) 2022-10-24 16:15:01 -07:00
eugeneswalker
a51bd80a5e
e4s ci: add chai +rocm (#32506) 2022-10-24 18:16:56 +02:00
Zack Galbreath
6d3869a7d3
Remove x86_64_v4 target from AHUG and ISC stacks (#33464) 2022-10-22 08:53:07 +00:00
Harmen Stoppels
669bbe1e66
stop building binaries for the 1% (#33463) 2022-10-22 02:01:50 -06:00
Scott Wittenburg
27921c38ce
gitlab: Retry protected publish jobs in certain cases (#32496)
When we lose a running pod (possibly loss of spot instance) or encounter
some other infrastructure-related failure of this job, we need to retry
it.  This retries the job the maximum number of times in those cases.
2022-10-21 10:35:20 -06:00
Harmen Stoppels
b1559cc831
gitlab: when_possible -> false (#33443)
`reuse` and `when_possible` concretization broke the invariant that
`spec[pkg_name]` has unique keys. This invariant is relied on in tons of
places, such as when setting up the build environment.

When using `when_possible` concretization, one may end up with two or
more `perl`s or `python`s among the transitive deps of a spec, because
concretization does not consider build-only deps of reusable specs.

Until the code base is fixed not to rely on this broken property of
`__getitem__`, we should disable reuse in CI.
2022-10-21 14:42:06 +02:00
eugeneswalker
1e4732d5fe
e4s ci: add raja +rocm (#32505) 2022-10-20 14:26:18 -07:00
eugeneswalker
8aac0d09d4
e4s ci: add umpire +rocm (#32504) 2022-10-19 17:05:45 -06:00
eugeneswalker
dd003f66a8
e4s ci stack: add trilinos +rocm (#31601) 2022-10-17 21:04:31 +00:00
Jonathon Anderson
10491e98a8
CI: allow multiple matches to combine tags (#32290)
Currently "spack ci generate" chooses the first matching entry in
gitlab-ci:mappings to fill attributes for a generated build-job,
requiring that the entire configuration matrix is listed out
explicitly. This unfortunately causes significant problems in
environments with large configuration spaces, for example the
environment in #31598 (spack.yaml) supports 5 operating systems,
3 architectures and 130 packages with explicit size requirements,
resulting in 1300 lines of configuration YAML.

This patch adds a configuraiton option to the gitlab-ci schema called
"match_behavior"; when it is set to "merge", all matching entries
are applied in order to the final build-job, allowing a few entries
to cover an entire matrix of configurations.

The default for "match_behavior" is "first", which behaves as before
this commit (only the runner attributes of the first match are used).

In addition, match entries may now include a "remove-attributes"
configuration, which allows matches to remove tags that have been
aggregated by prior matches. This only makes sense to use with
"match_behavior:merge". You can combine "runner-attributes" with
"remove-attributes" to effectively override prior tags.
2022-10-15 17:29:53 +00:00
eugeneswalker
a587bff119
e4s ci: add cabana +rocm (#33177) 2022-10-11 00:37:55 -06:00
eugeneswalker
dc141f5ad6
e4s: add hypre +rocm (#32148) 2022-10-10 16:09:52 -06:00
Adam J. Stewart
831d7979ca
ML CPU pipeline: test py-torch-nvidia-apex (#33158) 2022-10-10 12:18:05 -06:00
Adam J. Stewart
01ede3c595
Add CI stack for ML packages (#31592)
Basic stack of ML packages we would like to test and generate binaries for in CI. 

Spack now has a large CI framework in GitLab for PR testing and public binary generation.
We should take advantage of this to test and distribute optimized binaries for popular ML
frameworks.

This is a pretty extensive initial set, including CPU, ROCm, and CUDA versions of a core
`x96_64_v4` stack.

### Core ML frameworks

These are all popular core ML frameworks already available in Spack.

- [x] PyTorch
- [x] TensorFlow
- [x] Scikit-learn
- [x] MXNet
- [x] CNTK
- [x] Caffe
- [x] Chainer
- [x] XGBoost
- [x] Theano

### ML extensions

These are domain libraries and wrappers that build on top of core ML libraries

- [x] Keras
- [x] TensorBoard
- [x] torchvision
- [x] torchtext
- [x] torchaudio
- [x] TorchGeo
- [x] PyTorch Lightning
- [x] torchmetrics
- [x] GPyTorch
- [x] Horovod

### ML-adjacent libraries

These are libraries that aren't specific to ML but are still core libraries used in ML pipelines

- [x] numpy
- [x] scipy
- [x] pandas
- [x] ONNX
- [x] bazel

Co-authored-by: Jonathon Anderson <17242663+blue42u@users.noreply.github.com>
2022-10-09 15:39:47 -07:00
eugeneswalker
dfbeaff8ae
remove outdated comments (#33123) 2022-10-07 19:47:57 -07:00
eugeneswalker
01e7b89b53
e4s ci: add variorum (#33113) 2022-10-07 14:52:30 -07:00
eugeneswalker
041c1486f8
e4s ci: add h5bench (#33114) 2022-10-07 14:52:08 -07:00
eugeneswalker
35bc158387
e4s ci: add quantum-espresso (#33075) 2022-10-07 08:38:10 -07:00
eugeneswalker
a56cd8ffb6
e4s ci: add charliecloud (#32990) 2022-10-06 12:22:23 +02:00
eugeneswalker
1fe8387d23
e4s ci: add gotcha cpu (#32989) 2022-10-05 11:43:13 -07:00
eugeneswalker
cefc1dc808
e4s ci: add caliper +cuda (#32992) 2022-10-05 10:25:18 -07:00
eugeneswalker
af02dcbd2e
e4s ci: enable caliper cpu (#32988) 2022-10-05 10:25:04 -07:00