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Author SHA1 Message Date
Scott Wittenburg
a358358aa7 Update pinned OpenSSL version to 1.1.1l (#25787) 
Update to the latest version of openssl, as the previous one (1.1.1k) is
now deprecated, so spack can no longer rebuild it from source.
 2021-09-06 16:46:41 +00:00
bernhardkaindl
84d525dbdf perl: fix regressions in the end-of-life revisions (#25801) 
- perl@:5.24.1 needs zlib@:1.2.8 - shown by more than a dozen tests
  https://rt.cpan.org/Public/Bug/Display.html?id=120134

- perl@:5.26.2 needs gdbm@:1.14.1 - shown by the test suite
  https://rt-archive.perl.org/perl5/Ticket/Display.html?id=133295

- Fix the test case cpan/Time-Local/t/Local.t to use 4-digit years
  http://blogs.perl.org/users/tom_wyant/2020/01/my-y2020-bug.html
 2021-09-06 09:07:54 -06:00
bernhardkaindl
b5fa64fb10 libunistring: apply upstream fix for test suite (#25691) 
Simple case of pragma weak not working with --as-needed
https://bugs.gentoo.org/688464
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=925746

Added possiblity to build from git master(new version master)
 2021-09-06 08:55:38 -06:00
Olivier Cessenat
c424b86a64 gxsview: new package, an MCNP viewer (#25637) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2021-09-06 16:17:22 +02:00
Billae
ca50c91469 mesa: add v21.2.1 (#25715) 2021-09-06 16:02:11 +02:00
bernhardkaindl
13c0b0dcb3 uftrace: add new package (#25710) 2021-09-06 15:57:11 +02:00
Harmen Stoppels
834155fdb8 ccache 4.4 errors for old gcc/clang (#25783) 2021-09-06 15:33:08 +02:00
Axel Huebl
1badb47b80 WarpX/HiPACE/openPMD-api: Use when(...) (#25789) 
Use the new with `when()` syntax for variant dependencies.
 2021-09-06 15:26:04 +02:00
QuellynSnead
1a48c0f51c elfutils: address external linkage failures in 0.185 (#25769) 2021-09-06 15:07:42 +02:00
lukebroskop
92e4db4681 Do not allow cray build system patch for later version of otf2 (#25283) 
Co-authored-by: Luke Roskop <lroskop@cedar.head.cm.us.cray.com>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2021-09-06 14:38:51 +02:00
Terry Cojean
dd8dc08a90 Ginkgo: add v1.4.0 (#25606) 
* Add a patch to skip unavailable smoke tests.
 2021-09-06 14:11:35 +02:00
Jean-Paul Pelteret
3e4b576f83 deal.II: Bump minimum required version for Ginkgo package (#25795) 2021-09-06 14:07:11 +02:00
Michael Kuhn
526315410a gzip: add v1.11 (#25797) 2021-09-06 14:00:25 +02:00
Michael Kuhn
66526cb57a gdbm: add v1.21 (#25798) 2021-09-06 13:13:18 +02:00
Sebastian Ehlert
beff29176c fpm: new package (#25799) 2021-09-06 13:12:53 +02:00
Jordan Galby
2af6c57afa py-pyqt5: don't install files into qt5 install prefix (#25657) 
By default, py-pyqt5 installs qt designer and qml plugins into qt5's
install `<prefix>/plugins`. Don't do that.
 2021-09-06 12:18:13 +02:00
Peter Scheibel
accd6dd228 boost @1.76: set toolset for intel b2 invocation (#25722) 
and simplify constraint and add explanatory comment
 2021-09-05 13:34:10 +02:00
bernhardkaindl
0ad54e0679 New package: py-anytree (#25718) 
It is required for running all tests of gtk-doc.
 2021-09-03 14:14:38 -07:00
Asher Mancinelli
bbc9d7d965 HiOp package: update magma dependency (#25721) 2021-09-03 14:05:45 -07:00
bernhardkaindl
6f5ec73087 m4: fix glitch in the test suite (#25702) 2021-09-03 15:04:59 -06:00
Desmond Orton
0aedafda19 New package: getOrganelle@1.7.5.0 (#25725) 2021-09-03 14:04:24 -07:00
Jose E. Roman
ac3ccad1e2 SLEPc package: add gpu variants (#25760) 2021-09-03 14:01:42 -07:00
Cyrus Harrison
5180b0b454 apcomp package: add versions 0.0.3 and 0.0.2 (#25767) 2021-09-03 14:00:17 -07:00
pmargara
432f577a0c RELION package: add versions 3.1.3 and 3.1.2 (#25772) 2021-09-03 13:58:39 -07:00
Paul Spencer
f6060c9894 Mathematica package: add version 12.2.0 (#25791) 2021-09-03 13:41:39 -07:00
Harmen Stoppels
c6c9213766 rocblas: use AMDGPU_TARGETS instead of Tensile_ARCHITECTURE (#25778) 2021-09-03 18:19:57 +02:00
Harmen Stoppels
64407e253c Always disable leftover active environment after tests 2021-09-03 07:27:19 -07:00
Harmen Stoppels
de492e73d5 Don't error when removing scope that does not exist 2021-09-03 07:27:19 -07:00
Sreenivasa Murthy Kolam
29d344e4c7 update version for rocm-4.3.1 release (#25766) 2021-09-03 15:25:31 +02:00
bernhardkaindl
95586335f7 openssh: add v8.7 (#25774) 2021-09-03 06:22:40 -06:00
Weiqun Zhang
f56f4677cf amrex: 21.09 (#25739) 2021-09-03 03:34:56 -06:00
Desmond Orton
043f0cd014 py-ansi2html: new package (#25741) 2021-09-03 11:25:52 +02:00
Desmond Orton
9841d1f571 py-cryolobm: add new package (#25748) 2021-09-03 11:25:06 +02:00
Desmond Orton
d61439c26a py-lineenhancer: add new package (#25743) 2021-09-03 10:59:06 +02:00
Desmond Orton
0b9baf9ae3 py-terminaltables: add new package (#25738) 2021-09-03 10:58:18 +02:00
Axel Huebl
2331148f4b WarpX: 21.09 (#25771) 
Add the latest WarpX release.
 2021-09-03 10:53:29 +02:00
Stephen Hudson
ffec74c359 libensemble: add tasmanian as optional dependency (#25762) 2021-09-03 10:30:08 +02:00
Desmond Orton
f162dd4f5b py-gooey: new package (#25763) 2021-09-03 10:24:31 +02:00
Desmond Orton
8149048a78 py-colorclass: add new package (#25747) 2021-09-03 10:17:33 +02:00
Desmond Orton
2b7a2f66b7 py-mrcfile: add new package (#25742) 2021-09-03 10:16:38 +02:00
Desmond Orton
551766e3c6 py-pathtools: add new package (#25749) 2021-09-03 09:23:01 +02:00
Olivier Cessenat
35fe188d22 silo: add build dependency on m4 (#25770) 2021-09-03 08:54:31 +02:00
jacorvar
5f4fcea79c Correct typo in r-assertive-data-uk (#25754) 
`r-assertive-base` version contains a dot instead of a hyphen.
 2021-09-02 18:10:56 -05:00
Tamara Dahlgren
487edcc416 mfem: Update stand-alone test to use test stage directory (#25744) 2021-09-02 14:52:56 -07:00
Gianluca Ficarelli
f71d93fc55 py-submitit: add new package (#25699) 2021-09-02 07:58:02 -05:00
Gilles Gouaillardet
2d78045cdd gromacs: add v2021.3 (#25750) 2021-09-02 12:18:05 +02:00
Vanessasaurus
8e61f54260 start of work to add spack audit packages-https checker (#25670) 
This PR will add a new audit, specifically for spack package homepage urls (and eventually
other kinds I suspect) to see if there is an http address that can be changed to https.

Usage is as follows:

```bash
$ spack audit packages-https <package>
```
And in list view:

```bash
$ spack audit list
generic:
  Generic checks relying on global variables

configs:
  Sanity checks on compilers.yaml
  Sanity checks on packages.yaml

packages:
  Sanity checks on specs used in directives

packages-https:
  Sanity checks on https checks of package urls, etc.
```

I think it would be unwise to include with packages, because when run for all, since we do requests it takes a long time. I also like the idea of more well scoped checks - likely there will be other addresses for http/https within a package that we eventually check. For now, there are two error cases - one is when an https url is tried but there is some SSL error (or other error that means we cannot update to https):

```bash
$ spack audit packages-https zoltan
PKG-HTTPS-DIRECTIVES: 1 issue found
1. Error with attempting https for "zoltan": 
    <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: Hostname mismatch, certificate is not valid for 'www.cs.sandia.gov'. (_ssl.c:1125)>
```
This is either not fixable, or could be fixed with a change to the url or (better) contacting the site owners to ask about some certificate or similar.

The second case is when there is an http that needs to be https, which is a huge issue now, but hopefully not after this spack PR.

```bash
$ spack audit packages-https xman
Package "xman" uses http but has a valid https endpoint.
```

And then when a package is fixed:

```bash
$ spack audit packages-https zlib
PKG-HTTPS-DIRECTIVES: 0 issues found.
```
And that's mostly it. :)

Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
 2021-09-02 08:46:27 +02:00
Cody Balos
8a7af82a82 py-adios: add new version (#25746) 2021-09-01 23:19:45 -07:00
Harmen Stoppels
0c61b31922 Bump nlohman-json and fix cmake args (#25504) 
* Bump nlohman-json and fix cmake args

* Rename variant
 2021-09-01 18:28:11 -07:00
David Beckingsale
156edffec2 Update versions for RAJA, CHAI, Umpire and camp (#25528) 2021-09-01 17:58:47 -07:00