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Author SHA1 Message Date
Jim Galarowicz
643a9f2ed0 Trim comments to fit more concisely. 2017-02-13 09:55:22 -08:00
Jim Galarowicz
b4d3fd0071 Merge remote-tracking branch 'upstream/develop' into develop 2017-02-13 09:53:04 -08:00
Massimiliano Culpo
e34acd0074 qa: allow fast finish to avoid consuming a precious OSX build on a PR that will fail (#3120) 2017-02-10 18:21:52 -08:00
Adam J. Stewart
4dd0b349f9 Add Jmol package (#3041) 2017-02-10 16:18:56 -08:00
Adam J. Stewart
6e2903534a Add patch to allow PGI to build Bison (#3044) 2017-02-10 16:17:55 -08:00
Massimiliano Culpo
e24fdb49ea fix: don't call setup_environment when not needed (#3060) 
* Don't call setup_environment when not needed. fixes #3059

* setup_environment and modules: added unit tests
 2017-02-10 16:09:43 -08:00
Denis Davydov
cbbf5791ba numdiff: update dependencies and fix (#3061) 
compile with -O0 as per upstream known issue with optimization and GMP,
according to Ubuntu folks.
 2017-02-10 16:05:07 -08:00
Justin M Wozniak
2305f6434e New package.py for ExM C-Utils and Turbine (#3076) 
* New package.py for ExM C-Utils: An initial package dependency for Swift/T
* New package turbine

* Fix package.py as requested by @adamjstewart

* New package.py for ADLB/X: A 2nd package dependency for Swift/T

* Add latest version of GNU Parallel (#3106)

* Address formatting guidelines from @adamjstewart

* WIP on new Turbine package.py

* Formatting fixes

* Complete Turbine package.py
 2017-02-10 16:03:40 -08:00
healther
c98249c129 Add version 2017.0.098 to ipp (#3093) 2017-02-10 16:00:52 -08:00
Erik Schnetter
4362caa51a es: Declare readline dependency (#3071) 2017-02-10 16:00:20 -08:00
Adam J. Stewart
57855cab5d Explicitly tell MPC where to find its deps (#3073) 2017-02-10 15:59:46 -08:00
healther
563b6ab73a Add version 2017.0.098 to intel-mkl (#3092) 2017-02-10 15:55:02 -08:00
healther
2aec15a6f9 Add version 2.49.7 to glib (#3089) 2017-02-10 15:52:39 -08:00
becker33
f9e3b58d7e Make distro more robust to unreadable files (#3110) 
* Make distro more robust to unreadable files. Will upstream

* Comment for clarify
 2017-02-10 10:23:04 -08:00
Adam J. Stewart
f1ca79ba6c Add latest version of PGI (#3107) 2017-02-09 13:58:17 -08:00
Denis Davydov
b07835904a valgrind: add develop; fix build on macOS with clang (#3066) 
- add develop version to valgrind; fix build on macOS with clang
- switch valgrind to AutotoolsPackage
 2017-02-09 13:57:50 -08:00
Denis Davydov
b1eb921f28 make svn fetch quiet (#3070) 2017-02-09 13:55:18 -08:00
Jim Galarowicz
9ac06c99aa Merge remote-tracking branch 'upstream/develop' into develop 2017-02-09 11:39:30 -08:00
Adam J. Stewart
8d7bcbbbbb Add latest version of GNU Parallel (#3106) 2017-02-09 10:38:08 -08:00
Adam J. Stewart
2a3228e004 Add latest version of NCO (#3080) 2017-02-09 08:33:01 -08:00
Massimiliano Culpo
c91d18b622 qa: adjust thresholds for acceptance (#3105) 2017-02-09 08:31:57 -08:00
Jim Galarowicz
308db4c6e8 A fix was added for setting LD_LIBRARY_PATH in the qt3 build, but if LD_LIBRARY_PATH is not set the qt build fails. So so check and set LD_LIBRARY_PATH if not set, update if it is set. 2017-02-08 19:15:25 -08:00
Todd Gamblin
b192011add Revert "db and concretization of packages modified after installation: fixes #2911" (#3078) 2017-02-08 13:12:10 -08:00
Jim Galarowicz
085ca7392b Update the fix for qt3 build by setting LD_LIBRARY_PATH instead of checking for whether it is set or not per Adams comment that spack clears LD_LIBRARY_PATH. 2017-02-08 08:33:49 -08:00
Jim Galarowicz
60d58613ed A fix was added for setting LD_LIBRARY_PATH in the qt3 build, but if LD_LIBRARY_PATH is not set the qt build fails. So so check and set LD_LIBRARY_PATH if not set, update if it is set. 2017-02-07 19:57:56 -08:00
Jim Galarowicz
adbaed5d4b Merge remote-tracking branch 'upstream/develop' into develop 2017-02-07 19:46:19 -08:00
Massimiliano Culpo
79c1f7885a db and concretization of modified packages: fixes #2911 (#2920) 2017-02-07 18:28:01 -08:00
Massimiliano Culpo
28b7ef3175 codecov: added commit status, made green a reachable state (#3051) 2017-02-07 18:25:38 -08:00
Elizabeth Fischer
892955cc46 Add comments documenting problems in recent versions of NetCDF. (#3058) 2017-02-07 18:23:33 -08:00
Denis Davydov
4264051954 fix usage of self.build_directory in espressopp and astyle (#3053) 2017-02-07 18:22:52 -08:00
George Hartzell
b1f5b5f75b Add comment explaining why patch is still needed (#3054) 
[The fix](https://github.com/golang/go/issues/17986) for the small buglet addressed by `misc-cgo-testcshared.patch` has been merged into the tree a while back.  I was surprised to see that it wasn't in 1.7.5 and did a bit of digging.  It is *has not* been merged into the 1.7 branch but it *has* been merged into 1.8 (and therefor the patch will no longer be necessary).

Figured I'd document my digging for the next person to come along.
 2017-02-07 18:22:30 -08:00
Denis Davydov
7bf7016383 mpfr: add 3.1.5 (#3050) 2017-02-07 18:22:13 -08:00
Matthew Scott Krafczyk
f71df7bda3 move rpath from ALL to other sections of site.cfg (#3028) 
* move rpath from ALL to other sections of site.cfg.  Solves #3007
* Add back mac condition to py-numpy
* Refactor py-numpy a bit.
 2017-02-07 13:15:02 -08:00
Brian Van Essen
88e9bb586e Added a new version of the Google protobuf to the spack package. (#3046) 2017-02-07 10:05:02 -08:00
Adam J. Stewart
941dfcbe43 Bash Programmable Completion for Spack (#3026) 2017-02-06 12:34:35 -08:00
serbanmaerean
d78a35bb54 spectrum-mpi: Add new package file for external package (#3005) 
* spectrum-mpi: Add new package file for external package

IBM Spectrum MPI is a commercial implementation of MPI based on
OpenMPI.  It is usually install in /opt/ibm/spectrum_mpi.

Users need to add the Spectrum MPI package in their packages.yaml
file as follows:

packages:
    spectrum-mpi:
        version: ['10.1.0.2']
        paths:
            spectrum-mpi@10.1.0.2: /opt/ibm/spectrum_mpi/
        buildable: False

    all:
        providers:
            mpi: [spectrum-mpi@10.1.0.2]

* spectrum-mpi: Added license files and removed the versions

No need for versions as the package is external.

* spectrum-mpi: Remove extraneous defines

Keep only the defines that other MPI implementation define in their
package file:
    self.spec.mpicc
    self.spec.mpicxx
    self.spec.mpif77
    self.spec.mpifc
 2017-02-06 10:53:53 -08:00
Brian Van Essen
ffd582b2f6 Elemental (#2991) 
* Add a package for the Elemental distributed linear algebra library.
 2017-02-06 00:04:41 -08:00
Gregory Lee
158a1b9c36 fix OMPT support in Archer (#3035) 2017-02-05 23:34:38 -08:00
Nicolas Richart
7c09ad5305 Boostrapping the lammps package (#3032) 
* First commit for the lammps package
* reviewed by adamjstewart and davydden
 2017-02-05 19:34:53 -08:00
sknigh
dfff1f5cf4 Changed spark URL, Added version 2.0.2, 2.1.0 (#3027) 2017-02-05 15:56:34 -08:00
George Hartzell
d1c7f9c8bd Add a package for hunspell (#3029) 
Add a package for the hunspell spelling checker.

This was created by `spack create`, trimmed down, and tested on CentOS 7.
 2017-02-05 15:55:55 -08:00
健美猫
47f9096073 Use the official Maven site. (#3034) 2017-02-05 15:49:05 -08:00
Gregory Lee
ccb07dc25e added archer OpenMP race detector and its deps (#3030) 2017-02-04 15:42:22 -08:00
becker33
968199de7d Fix spec hash printing (#2941) 
- Fix format printing to match command line for hashes and full name formats
- Update spack graph to use new format
- Changed format string signifier for hashes from `$#` to `$/`
 2017-02-03 18:27:34 -08:00
Carlos Bederián
5aefaa6ffe Add FFTW 2.1.5 (#2987) 2017-02-03 18:26:27 -08:00
Carlos Bederián
384698157a MKL: Provide scalapack (#2974) 2017-02-03 18:18:31 -08:00
Erik Schnetter
4c1c284e56 New package “es” (extensible shell) (#3009) 2017-02-03 18:09:25 -08:00
George Hartzell
5e2827433c Update go to v1.7.5 (#3023) 
Update the go package to v1.7.5.

- This release no longer needs the time-test patch (it's been merged upstream).
- This release still seems to need the cgo-testcshared patch.
- Also add a comment about environment set up that I need to build it successfully on a very large server.

Tested on CentOS 7.
 2017-02-03 18:09:01 -08:00
健美猫
864670c0ab Retrive CUDA installers from Internet. (#3012) 2017-02-03 18:07:54 -08:00
sknigh
24553c12bb Flex and Glib builds are dependent on m4 (#3022) 2017-02-03 17:19:23 -08:00