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64b1bafd41ee5f9770e7082d45a95059a48a6aaa
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1879 Commits

Author SHA1 Message Date
George Hartzell
64b1bafd41 Make flake8 happy with .../jdk/package.py 
My PR for adding a new jdk version failed its
travis run because of existing flake8 violoations.

This package cleans them up.

I'm not particularly pythonic, but most of the complaints were
obvious.  HOWEVER, I'm not particularly confident about handling
long lines by taking an flake8 exception comment onto the end.

Feedback welcome...
 2016-07-15 12:39:40 -04:00
George Hartzell
a73d91a2e5 Add URL and md5 for jdk-8u92. 
Installed on Centos7.2 system, `java -version` works.
 2016-07-12 16:59:08 -04:00
Todd Gamblin
069de3f008 Merge pull request #1223 from glennpj/tidyr 
New package - r-tidyr
 2016-07-12 00:23:09 -07:00
Todd Gamblin
04b3d8d86f Merge pull request #1222 from glennpj/libxml2 
Use the site_packages_dir from the Python class
 2016-07-12 00:22:45 -07:00
Glenn Johnson
502d15fd3b New package - r-tidyr 
Tools for changing the layout of data sets.
 2016-07-11 21:12:28 -05:00
Glenn Johnson
5e323b052a Remove import of os 
The import of `os` is no longer needed.
 2016-07-11 20:21:25 -05:00
Glenn Johnson
81daaddfe9 Use the site_packages_dir from the Python class 
It is not necessary to set site_packages_dir in this package as it is
already provided by the Python package class.
 2016-07-11 20:08:30 -05:00
Todd Gamblin
15790d7018 Merge pull request #1207 from davydden/pkg/dealii_update_petsc37 
dealii: update for petsc37
 2016-07-11 15:32:32 -07:00
Glenn Johnson
1b08296392 Fix flake8 error 2016-07-11 17:22:31 -05:00
Glenn Johnson
8de84b5d8a Fix error reported on Google Groups list 
Fixes the reported `TypeError: not enough arguments for format string`
error.
 2016-07-11 16:56:26 -05:00
Todd Gamblin
efdcd199c1 Merge pull request #1218 from glennpj/dplyr 
New package - r-dplyr
 2016-07-11 13:19:09 -07:00
Glenn Johnson
d99fbbb68f New package - r-lubridate 
Functions to work with date-times and timespans.
 2016-07-11 14:59:47 -05:00
Glenn Johnson
11960e53ef New package - r-dplyr 
This brings in dplyr and dependencies.
 2016-07-11 14:50:33 -05:00
Todd Gamblin
255d05a9c1 Merge pull request #1214 from glennpj/rfilter 
Filter compilers for R
 2016-07-11 11:37:39 -07:00
Glenn Johnson
664bdd359f Filter compilers for R 
This adds a filter_compilers function to have the Makeconf file for R
point to the actual compilers rather than the spack wrappers. Also added
version 3.3.1.
 2016-07-11 13:29:43 -05:00
Todd Gamblin
691e628726 Merge pull request #1206 from davydden/pkg/slepc_371_fix 
slepc: fix install_name for binaries on macOS for 3.7.1
 2016-07-11 09:14:53 -07:00
Paul Hopkins
0d3a52ae29 Fix typo in Octave variant suitesparse 2016-07-11 16:00:19 +01:00
Denis Davydov
1b553f2b21 dealii: fix directory structure 2016-07-11 13:21:16 +02:00
Denis Davydov
f14cd67446 dealii: flake8 fixes 2016-07-11 10:56:57 +02:00
Denis Davydov
84afaf385f dealii: run tests only when self.run_tests=true 2016-07-11 10:22:29 +02:00
Denis Davydov
1cc6e42682 dealii: add petsc/slepc 3.7 support 2016-07-11 10:20:15 +02:00
Denis Davydov
38550bbc1b slepc: fix install_name for binaries on macOS for 3.7.1 2016-07-11 10:17:09 +02:00
Todd Gamblin
b0f4052bd8 Merge pull request #1169 from davydden/feature/install_argument_tests_petsc_fixes 
--run-tests install argument and petsc fixes
 2016-07-09 12:10:16 -07:00
Denis Davydov
e482994a15 petsc: add -lm when building example 2016-07-09 08:12:34 +02:00
Erik Schnetter
c8137194f0 Update Cereal to 1.2.0 2016-07-08 15:20:09 -04:00
Todd Gamblin
f04258eb29 Merge pull request #1192 from SteVwonder/develop 
docbook-xml: replace 'cp -t' with install_tree
 2016-07-08 11:09:41 -07:00
Todd Gamblin
1fa67e458c Merge pull request #1194 from SteVwonder/lua-fix 
lua: switch self.version[:2] to .up_to(2)
 2016-07-08 11:09:18 -07:00
Stephen Herbein
bb8a8ecda3 json-c: fix build by running serially 2016-07-08 10:39:47 -07:00
Stephen Herbein
1a1bf31032 lua: switch self.version[:2] to .up_to(2) 
Previous package would not install correctly, would throw:
return os.path.join('share', 'lua', '%d.%d' % self.version[:2])
TypeError: %d format: a number is required, not Version
 2016-07-07 18:58:52 -07:00
Stephen Herbein
1b53452618 docbook-xml: replace 'cp -t' with install_tree 
'-t' is not supported by the default cp on Mac OS X

replace with install/install_tree

cannot just use install_tree since shutil.copytree insists that the dst
directory not exist
 2016-07-07 17:41:53 -07:00
Todd Gamblin
6bb31a9a4c Merge pull request #1175 from davydden/pkg/arpack-3.4.0 
Pkg/arpack 3.4.0
 2016-07-06 14:45:21 -07:00
Todd Gamblin
91da3d8e64 Merge pull request #1174 from LLNL/bugfix/github-1172-suite-sparse 
Bugfix/GitHub 1172 suite sparse
 2016-07-06 14:35:59 -07:00
Todd Gamblin
c6e89d9283 Merge pull request #1180 from davydden/pkg/oce_update_and_fix 
oce: add 0.17.2; fix running tests
 2016-07-06 14:27:05 -07:00
Denis Davydov
14cef6eab8 oce: flake8 fixes 2016-07-06 22:51:20 +02:00
Denis Davydov
c096bb332a petsc: fix unit tests 2016-07-06 22:45:43 +02:00
Greg Lee
3df0f1902d clean up suitesparse deps 2016-07-06 12:15:20 -07:00
Greg Lee
4e27d91351 flake 8 fixes 2016-07-06 11:51:32 -07:00
Denis Davydov
57eaea2e8c oce: add 0.17.2; fix running tests 2016-07-06 20:35:59 +02:00
Paul Hopkins
61fe89bda0 Add ucs4 unicode variant to Python package 2016-07-06 18:29:54 +01:00
Denis Davydov
3d755a148b arpack-ng: fix binaries for macOS 2016-07-06 18:30:38 +02:00
Denis Davydov
c8fc56686c arpack-ng: fix corrupted parpack_cmake.patch 2016-07-06 13:42:59 +02:00
Denis Davydov
63e45c586c arpack-ng: flake8 fixes and minor update of incode comments 2016-07-06 13:27:02 +02:00
Denis Davydov
a47b3ba01b arpack-ng: use spec['mpi'].mpif77 2016-07-06 13:23:51 +02:00
Denis Davydov
f5f7abd71f arpack-ng: add 3.4.0 with cmake build 2016-07-06 12:59:42 +02:00
Greg Lee
4c063c6055 kludge to get suite-sparse-4.5.1 to link with -lstdc++ 2016-07-05 13:48:32 -07:00
Greg Lee
976b2b4d25 added suitesparse version 4.5.3 2016-07-05 13:45:22 -07:00
Erik Schnetter
79b3ef0362 Don't enforce hdf5~mpi 2016-07-05 10:58:11 -04:00
Todd Gamblin
d687e332ad Fix compile bugs for gcc on Mac OS X with macports. 
- add macports to things that are cleaned out of the environment.
- linker incompatibilities cause issues with packages like OpenSSL.
- also clean up NOQA stuff in OpenSSL
 2016-07-04 22:59:02 -07:00
Todd Gamblin
f2a692c515 Merge pull request #1163 from epfl-scitas/fixes/reserved_name_for_system_packages 
fixes : reserved name for system packages
 2016-07-04 21:25:50 -07:00
Todd Gamblin
d166c04db5 Merge pull request #1166 from glennpj/rstan 
New package - RStan
 2016-07-04 21:23:10 -07:00