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Author SHA1 Message Date
Greg Becker
480b7f397e Allow users to remove items from hierarchy per-path (#31351) 
* lmod modules: allow users to remove items from hierarchy per-spec

This allows MPI wrappers that depend on MPI to be removed from the MPI portion of
the hierarchy and be made available when the appropriate compiler is loaded.

module load gcc
module load mpi-wrapper  # implicitly loads mpi
module load hdf5

This allows users to treat an mpi wrapper like an mpi program
 2023-04-17 22:17:11 -07:00
Wouter Deconinck
2bc1779a71 py-html5lib, madgraph5amc: correct hashes of empty files (#36979) 
* py-html5lib: correct hashes of empty files

Going through and fixing hashes that are due to empty string.
```console
$ grep -Ir $(echo -n | sha256sum | awk '{print$1}') $SPACK_ROOT/var/spack/repos/builtin
/home/wdconinc/git/spack/var/spack/repos/builtin/packages/madgraph5amc/package.py:        sha256="e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855",
/home/wdconinc/git/spack/var/spack/repos/builtin/packages/py-html5lib/package.py:    version("0.99", sha256="e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855")
```

```console
$ spack checksum py-html5lib 0.99
==> Found 1 version of py-html5lib:
  
  0.99  https://files.pythonhosted.org/packages/source/h/html5lib/html5lib-0.99.tar.gz

==> Fetching https://files.pythonhosted.org/packages/source/h/html5lib/html5lib-0.99.tar.gz

    version("0.99", sha256="aff6fd3031c563883197e5a04b7df324086ff5f358278a0386808c463a077e59")
```

* madgraph5: remove incorrectly hashed version
 2023-04-17 23:14:10 -04:00
Wouter Deconinck
9ea7937f6d qt: new version 5.15.9 (#36709) 
This adds the new LTS version of Qt5. No build system changes needed.

The bundled libjpeg and sqlite versions were updated, but it is unclear if these are actual build requirements, and we have not been tracking these specific versions in the version dependencies (likely due to exactly this lack of clarity).

Compare: https://github.com/qt/qtbase/compare/v5.15.8-lts-lgpl...v5.15.9-lts-lgpl
 2023-04-17 15:06:44 -04:00
Harmen Stoppels
381c0af988 Revert "move depfile logic into its own module, separate traversal logic from model (#36911)" (#36985) 
This reverts commit a676f706a8.
 2023-04-17 20:58:38 +02:00
Paul Kuberry
4519b42214 xyce: patch issue affecting MPICH (#36826) 2023-04-17 10:19:08 -07:00
Rémi Lacroix
8e50c08b3f Add NetCDF95 package. (#36959) 
* Add NetCDF95 package.
  NetCDF95 is an alternative Fortran interface to the NetCDF library which uses Fortran   2003 features.
* [@spackbot] updating style on behalf of RemiLacroix-IDRIS

---------

Co-authored-by: RemiLacroix-IDRIS <RemiLacroix-IDRIS@users.noreply.github.com>
 2023-04-17 10:02:54 -07:00
Tim Haines
121ef695e3 Boost: add version 1.82.0 (#36924) 2023-04-17 18:35:45 +02:00
Sergey Kosukhin
275bfc15b4 netcdf-c: major refactoring, new variants and versions (#36485) 2023-04-17 17:59:10 +02:00
Adam J. Stewart
036695ac94 CI: update Linux images in ML pipelines (#36766) 
Add missing openssl/curl/pkgconfig deps to py-tokenizers

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2023-04-17 17:42:03 +02:00
Alec Scott
19b55d6b27 r-rstantools: add v2.3.1 (#36890) 2023-04-17 08:53:06 -05:00
Alec Scott
993303f840 r-r-utils: add v2.12.2 (#36884) 2023-04-17 08:29:41 -05:00
Harmen Stoppels
a676f706a8 move depfile logic into its own module, separate traversal logic from model (#36911) 2023-04-17 15:27:01 +02:00
Alec Scott
2081ab8be1 cgl: add v0.60.7 (#36940) 2023-04-17 15:07:34 +02:00
Alec Scott
f2efec7fcc masurca: add v4.1.0 (#36942) 2023-04-17 15:07:17 +02:00
Alec Scott
e7b549216c spot: add v2.11.4 (#36943) 2023-04-17 15:06:56 +02:00
Alec Scott
426570fc3f glab: add v1.28.0 (#36946) 2023-04-17 15:06:32 +02:00
Carlos Bederián
0e55055394 plumed: add 2.8.2, 2.7.6 and their supported gromacs combinations (#36929) 
* plumed: Add 2.8.2, 2.7.6

* gromacs: add plumed 2.8.2 and 2.7.6 support
 2023-04-17 15:05:31 +02:00
Alec Scott
1bbeb61668 slang: add v2.3.3 (#36952) 2023-04-17 15:04:57 +02:00
Alec Scott
376d87619b transdecoder: add v5.7.0 (#36953) 2023-04-17 15:04:41 +02:00
Alec Scott
f82b4a68b8 Add "build" stage to many Go packages (#36795) 2023-04-17 15:03:09 +02:00
Adam J. Stewart
abb236e98a py-lightly: py-torch+distributed required (#36955) 2023-04-17 15:02:13 +02:00
Adam J. Stewart
adf0ce6621 py-sphinx: add new versions (#36938) 2023-04-17 15:01:32 +02:00
Alec Scott
5368049128 ruby-rake: add v13.0.6 (#36945) 2023-04-17 15:00:39 +02:00
Alec Scott
8afa166edf hepmc3: add v3.2.6 (#36941) 2023-04-17 15:00:22 +02:00
Taillefumier Mathieu
79a1b3bc12 Add umpire support to SIRIUS (#36958) 2023-04-17 08:53:11 -04:00
Glenn Johnson
4b6ab53a10 Add dependency changes to R packages (#36937) 
This PR adds dependency changes that were missed with some recent merges
of R package updates.
 2023-04-17 09:50:46 +02:00
Harmen Stoppels
58f389779a rust: depend on curl+nghttp2 (#36947) 2023-04-16 21:50:37 -05:00
Wouter Deconinck
508cad0bbc apptainer: new versions 1.1.6, 1.1.7 (#36838) 
* apptainer: new versions 1.0.6, 1.0.7

No changes to build system required. https://github.com/apptainer/apptainer/compare/v1.1.5...v1.1.7

* apptainer: rm hanging chad
 2023-04-16 18:51:06 -07:00
Juan Miguel Carceller
d22fa1be19 Change extend to append (#36939) 
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
 2023-04-16 18:40:48 -07:00
Wouter Deconinck
77830d92bd libmypaint: change extend to append (#36957) 
* libmypaint: change extend to append

For same reason as #36939, `extend` takes a list as argument, while `append` takes list entry. Here `append` should be used.

* libmypaint: depends_on intltool
 2023-04-16 18:37:48 -07:00
Alec Scott
14075f9f4c r-jsonlite: add v1.8.4 (#36872) 2023-04-15 22:02:50 -04:00
Alec Scott
fc58f5d174 r-progressr: add v0.13.0 (#36881) 2023-04-15 21:57:48 -04:00
Alec Scott
25ba8702c7 r-hoardr: add v0.5.3 (#36869) 2023-04-15 21:37:42 -04:00
Alec Scott
b064f9d1e0 r-sn: add v2.1.1 (#36891) 2023-04-15 13:09:25 -05:00
Alec Scott
d43690a91b r-rstan: add v2.21.8 (#36889) 2023-04-15 13:07:57 -05:00
Alec Scott
b6c2487f74 r-timedate: add v4022.108 (#36897) 2023-04-15 09:31:54 -07:00
Alec Scott
32c3ce204d libctl: add v4.5.1 (#36852) 2023-04-15 09:20:43 -05:00
Alec Scott
8893605b1e r-yulab-utils: add v0.0.6 (#36900) 2023-04-15 08:33:32 -05:00
Alec Scott
1345e98ae7 r-spades-tools: add v1.0.1 (#36892) 2023-04-15 15:25:05 +02:00
Alec Scott
7dfcb37975 r-svglite: add v2.1.1 (#36893) 2023-04-15 15:24:49 +02:00
Alec Scott
7854f64e1e r-taxizedb: add v0.3.1 (#36894) 2023-04-15 15:24:33 +02:00
Alec Scott
e18f6ffc28 r-tibble: add v3.2.1 (#36895) 2023-04-15 15:24:19 +02:00
Alec Scott
9e463adac1 r-tidytree: add v0.4.2 (#36896) 2023-04-15 15:24:04 +02:00
Alec Scott
839f820127 sdl2: add v2.26.5 (#36901) 2023-04-15 15:22:26 +02:00
Alec Scott
1c0b028aaa r-utf8: add v1.2.3 (#36898) 2023-04-15 15:22:10 +02:00
Alec Scott
db38f4d75a r-xts: add v0.13.0 (#36899) 2023-04-15 15:21:54 +02:00
Alec Scott
4cbc0c420c r-dendextend: add v1.17.1 (#36861) 2023-04-15 08:15:17 -05:00
Alec Scott
856b6d6d01 r-curl: add v5.0.0 (#36860) 2023-04-15 08:03:41 -05:00
Alec Scott
51fb778358 r-earth: add v5.3.2 (#36863) 2023-04-15 07:57:03 -05:00
Howard Pritchard
cad16f5d3d OpenMPI: tell it where libcuda.so is (#36784) 
starting with the 5.0.x release stream the cuda related configury
items in Open MPI once again need --with-cuda-libdir so that
libcuda.so can be found at configure time, otherwise no cuda
support unless someone copies libcuda.so to
$CUDA_HOME/lib64

related to #36760

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2023-04-15 14:53:15 +02:00