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Commit Graph

9298 Commits

Author SHA1 Message Date
Adam J. Stewart
269f34c310 Add py-astropy 2.0.14 (#12816) 2019-09-16 13:09:30 -05:00
Adam J. Stewart
98eb8ef0af Add py-beautifulsoup4 4.8.0 (#12815) 2019-09-16 13:08:36 -05:00
Adam J. Stewart
94291ebd1a Add py-mpld3 package (#12822) 2019-09-16 13:08:17 -05:00
Adam J. Stewart
a08a7da413 Add py-asdf package (#12817) 2019-09-16 13:07:48 -05:00
Adam J. Stewart
fea315e274 Add py-bintrees package (#12818) 2019-09-16 13:07:21 -05:00
Adam J. Stewart
0885615e22 Add py-lscsoft-glue package (#12821) 2019-09-16 13:06:59 -05:00
Adam J. Stewart
3b11dfdca0 Add py-jplephem package (#12819) 2019-09-16 13:06:33 -05:00
Adam J. Stewart
947413236b Add py-ligo-segments package (#12820) 2019-09-16 13:06:09 -05:00
Adam J. Stewart
4cce23d1d3 Add py-pyopenssl package (#12824) 2019-09-16 13:05:37 -05:00
Adam J. Stewart
0d64b12c58 Add py-semantic-version package (#12825) 2019-09-16 13:05:12 -05:00
Adam J. Stewart
b8481d7913 Add py-sortedcontainers package (#12826) 2019-09-16 13:04:50 -05:00
Adam J. Stewart
09e3d6514b Add py-weave package (#12828) 2019-09-16 12:57:18 -05:00
Adam J. Stewart
321c857d4c Add py-soupsieve package (#12827) 2019-09-16 12:56:53 -05:00
Adam J. Stewart
e3969e33fd Relax Python version constraints on py-html5lib (#12811) 2019-09-16 12:56:21 -05:00
Chuck Atkins
76b79c125a xdmf3: new package (#12778) 2019-09-16 12:02:07 -04:00
Ruben Di Battista
9675db4e7f qt: Fix build with GCC9 for version 4 (#12832) 
* qt: Fix build w/ GCC9 for @4:

* qt: Fix patch filename and qt version

* Fix typo in patch name
 2019-09-14 14:00:46 -05:00
Toyohisa Kameyama
c26a3ff894 flang: build on arm. (#12808) 2019-09-14 11:15:06 -05:00
Adam J. Stewart
5f18696169 py-bleach package: add version 3.1.0 (#12814) 2019-09-13 19:15:54 -07:00
Adam J. Stewart
3a47a6196f py-cython package: fix --test (#12813) 
Fix bug in string conversion of "make_jobs"
 2019-09-13 19:15:06 -07:00
Adam J. Stewart
a3c6b07c96 py-emcee package: add version 2.2.1 (#12812) 2019-09-13 19:13:45 -07:00
Adam J. Stewart
f9b8442e1b wcslib package: add version 6.4 (#12810) 2019-09-13 19:09:54 -07:00
Glenn P Johnson
6937416a65 Add diamond dependency 2019-09-13 19:08:57 -07:00
Glenn P Johnson
09047d76e9 Update braker package 
- add version 2.1.4
- change url to github
- add perl dependencies
- new version has a new source layout
- filter shebang to use spack perl
 2019-09-13 19:08:57 -07:00
Glenn P Johnson
b046ee20f5 Fixes for augustus package 
- add missing perl dependency
- only filter Makefile if referred to dependency is in the spec
- rewrite the shebang line of scripts to use spack perl
- remove tabix dependency as tabix and bgzip are part of htslib
 2019-09-13 19:07:35 -07:00
Glenn P Johnson
2256890d4e Update genemark-et package 
- add version 4.46
- add missing perl dependencies
- new version has different source layout
- filter shebang to use spack perl
 2019-09-13 19:05:02 -07:00
Sinan
6df57bb2d0 New package: py-pykwalify (#12540) 2019-09-13 12:22:08 -07:00
Frédéric Simonis
3f06d5c12a preCICE: added versions 1.6.0 and 1.6.1 (#12809) 2019-09-13 16:04:50 +02:00
Glenn Johnson
3cc95c6427 diamond: added version 0.9.25 (#12805) 2019-09-13 07:37:52 +02:00
Sinan
48e9090252 New package: py-ruamel-yaml (#12543) 2019-09-12 15:46:39 -07:00
Owen Solberg
78f3f4c309 Singularity package: add version 3.4.0 (#12785) 
This version in combination with the included patch can install
without root.
 2019-09-12 13:45:00 -07:00
Owen Solberg
6608876747 New package: cryptsetup (#12762) 
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
 2019-09-12 13:41:53 -07:00
Sinan
b95b4bb9e0 add compilation option to sqlite (#12794) 
* add compilation option to sqlite

* rename variant

* fix bug

* re-rename variant
 2019-09-12 15:31:03 -05:00
ktsai7
96ba5a1265 Update legion gasnet config (#12523) 2019-09-12 13:46:37 -06:00
Simo Tuomisto
5a6d060b52 py-gpaw: Fixed broken fftw linking in newer versions of py-gpaw (#12795) 2019-09-12 09:36:45 -05:00
brietzke
3269f712f0 fgsl: new version + fix for recent spack commit (#12790) 2019-09-11 20:15:50 -05:00
Chris Green
e727e79b73 jsoncpp: new versions, support cxxstd variant. (#12780) 2019-09-11 12:32:49 +02:00
Owen Solberg
e3d06dc0d7 create package popt (#12783) 2019-09-10 21:33:33 -05:00
Jonas Lippuner
97641aab63 fix bug in p4est (don't use MPI spec if not compiling with MPI) (#12784) 2019-09-10 19:39:42 -05:00
Hironori-Yamaji
9962696128 openmx: new package (#12768) 
* openmx: new package

* openmx: use copy method
 2019-09-10 12:59:13 -05:00
Janne Blomqvist
3f1762bcc2 cuda: New version 10.1.243 (#12777) 
* cuda: New version 10.1.243

Adds CUDA 10.1.243. The installer command-line arguments have slightly
changed, hence in the install method the version needs to be inspected
in order to give the correct arguments for the new installer.

* cuda: Combine common command-line arguments

The CUDA 10.1+ installer has slightly different command-line arguments
than previous versions.  Keep the common parts together and only split
where they are different.

* Make flake8 happy
 2019-09-10 10:52:55 -07:00
Owen Solberg
c23bea80bd py-atropos: new package (#12745) 
* create new package py-atropos

* remove whitespace

* make tqdm and pysam dependencies optional, exposed as variants
 2019-09-10 12:18:31 -05:00
Hironori-Yamaji
fefd998509 ccs-qcd: disable parallel builds (#12775) 2019-09-10 14:19:09 +02:00
xfzhao
c30f9c6833 update bbmap (#12721) 
* update bbmap

* remove one extra comment line
 2019-09-09 12:55:06 -05:00
Michael Kuhn
62f0286f5e Fix pkgconfig dependencies (#12714) 
pkgconfig is the virtual dependency, pkg-config is an implementation.
 2019-09-09 12:54:46 -05:00
brietzke
4de32033b1 Update py-bokeh: new version & dependencies" (#12724) 
* update py-bokeh: new version & dependencies

* Revert "update py-bokeh: new version & dependencies"

This reverts commit 5e191a0b20.

* update py-bokeh: new version & dependencies

* trigger travis-ci

* adjust python dependency-type to br
 2019-09-09 11:59:27 -05:00
brietzke
155a667b7a New package: py-fsspec (#12725) 
* update py-bokeh: new version & dependencies

* Revert "update py-bokeh: new version & dependencies"

This reverts commit 5e191a0b20.

* new package: py-fsspec: add package.py

* trigger travis-ci

* adjust python dependency-type to br
 2019-09-09 11:58:49 -05:00
Dan Lipsa
1a8c572316 Paraview version (#12766) 
* Update paraview

* Paraview 5.6.2 provides only .xz (no .gz)

* Add list_url and list_depth
 2019-09-09 11:57:53 -05:00
viniciusvgp
7849dbb529 binutils: fix undefined symbol libintl_dgettext (#12770) 2019-09-09 11:05:04 -05:00
Greg Sjaardema
db1fb16840 CGNS: Add setting of RPATH on Darwin (#9984) 
* CGNS: Add setting of RPATH on Darwin

This should go in the CGNS CMakeLists.txt, but it isn't there yet and won't be in previous versions, so best to handle it here.  
If building on darwin/MacOSX, need to set the RPATH so applications can find shared library correctly.

* Restrict MACOSX_RPATH setting

This has now been added to the CGNS distribution, so the setting of `CMAKE_MACOSX_RPATH` should be restricted to current and previous releases and not upcoming releases.
 2019-09-08 17:14:56 -05:00
Geoffrey Oxberry
983e6b4a4a fribidi@1.0.5: new package (#12386) 2019-09-08 17:10:39 -05:00