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Author SHA1 Message Date
Massimiliano Culpo
6b85f6b405 ci: deprecate the --dependencies and --optimize option (#45005) 2024-07-02 22:06:52 +02:00
Matt Thompson
5686a6b928 mepo: new package (#44879) 
* mepo: add new package
* Add mepo 2.0.0rc4
* Update dependencies
 2024-07-02 12:18:40 -07:00
Hector Barrios
ad665c6af1 fix static linking when using Intel OneAPI mkl (#36991) 2024-07-02 13:55:30 -04:00
Mikael Simberg
d78d6db61e fmt: add 11.0.0 (#44997) 2024-07-02 11:51:37 -06:00
Wouter Deconinck
f47c307bf4 fastor: new package (#44984) 
* fastor: new package

* fastor: apply code suggestions and fix style
 2024-07-02 09:33:09 -06:00
Harmen Stoppels
5b4edb9499 queue -> stack (#45002) 2024-07-02 16:41:29 +02:00
Harmen Stoppels
a6e6093922 spack_yaml.py: fix default_flow_style (#44998) 2024-07-02 14:01:13 +02:00
Harmen Stoppels
2e8b4e660e spack_yaml: add anchorify function (#44995) 
This adds spack.util.spack_yaml.anchorify, which takes a non-cyclic
dict/list structure, and replaces identical values with (back)
references to the first instance, so that yaml serialization will use
anchors.

`repr` is used to identify sub-dags, which in principle is quadratic
complexity in depth of the graph, but in practice the depth is O(1) so
this should not matter.

Then this is used in CI to reduce the size of generated YAML files to
30% of their original size.
 2024-07-02 14:00:19 +02:00
Harmen Stoppels
0ca1ee8b91 Pipelines: update configuration for aws-isc (#44999) 
1.18 is not a string in YAML

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2024-07-02 12:39:35 +02:00
Adam J. Stewart
a322672259 py-pillow: add v10.4.0 (#44983) 2024-07-02 03:59:24 -06:00
Dom Heinzeller
6cab86d0c1 New package py-pyhdf (#44877) 
* Add var/spack/repos/builtin/packages/py-pyhdf/package.py
* Address reviewer comments regarding dependencies for new package py-pyhdf
 2024-07-02 01:19:04 -06:00
Robert Cohn
86e7e2e070 [intel-oneapi-mpi]: restore support for classic wrapper names (#44982) 
* [intel-oneapi-mpi]: add back support for classic wrappers

* spack style fixes

* add error checking
 2024-07-01 18:54:14 -06:00
Cody Balos
69fca439f4 care: add v0.13.1, v0.13.0 and v0.12.0 (#44936) 
* care: add v0.13.0 and v0.12.0
* add maintainer
* add 0.13.1
* update dependencies
 2024-07-01 16:45:01 -06:00
Vicente Bolea
3b90fb589f vtk: update vtk to 9.3.1 (#44966) 
* vtk: add 9.3.1 version

* vtk: update maintainers
 2024-07-01 16:20:31 -06:00
Harmen Stoppels
fff126204c cmd/develop.py: fix readability (#44980) 
stage[0] is assumed to be for sources, 1: and onwards is
patches/resources, make that a bit more clear.
 2024-07-01 12:14:00 -07:00
Szabolcs Horvát
98e626cf67 igraph: add 0.10.13 (#44975) 2024-07-01 12:10:38 -07:00
Richard Berger
d8fe628a95 LAMMPS updates (#44977) 
* lammps: add new versions
* lammps: add directories for plugins
* lammps-example-plugin: new package
   Example illustrating how to install a LAMMPS plugin, based on the
   example part of the LAMMPS distribution.
 2024-07-01 11:57:26 -07:00
Weiqun Zhang
4c378840e3 amrex: add v24.07 (#44985) 2024-07-01 11:50:28 -07:00
eugeneswalker
18de6a480b e4s ci: reduce size due to 5mb gitlab artifact limit (#44986) 2024-07-01 20:28:56 +02:00
Kun Wu
c6da4d586b cuda: add v12.5.0 (#44971) 
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
 2024-07-01 17:45:04 +00:00
Tamara Dahlgren
61d6fc70e8 Docs: include cmake spec property for the command (#44956) 2024-07-01 10:28:26 -07:00
Vicente Bolea
7c65655c7e adios2: add patch to support rocm6 (#44941) 
* adios2: add patch to support rocm6

* e4s rocm ci: re-enable adios2 +rocm

---------

Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
 2024-07-01 09:20:48 -07:00
snehring
76ca264b72 py-tesorter: add post install hmmpress step (#44940) 
Signed-off-by: Shane Nehring <snehring@iastate.edu>
 2024-07-01 16:51:26 +02:00
Vicente Bolea
aa58d3c170 vtk-m: update vtk-m to 2.2.0-rc1 (#44875) 2024-07-01 16:49:22 +02:00
Harmen Stoppels
a32b898a00 curl: remove deprecated versions (#44630) 2024-07-01 16:31:54 +02:00
Adam J. Stewart
6fcd43ee64 py-tensorflow: add v2.16.2 (#44974) 2024-07-01 15:50:52 +02:00
Richard Berger
f1f9f00d43 flecsi: cleanup spackage (#44873) 2024-07-01 15:49:59 +02:00
renjithravindrankannath
8ff27f9257 libffi: enable pic (#44970) 
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2024-07-01 07:01:12 -06:00
Adam J. Stewart
78c62532c7 py-scipy: add v1.14.0 (#44967) 2024-07-01 14:21:41 +02:00
Harmen Stoppels
a7f327dced zlib-ng: add patch for lld 17+ (#44684) 
- add new patch for recent lld
- remove workaround for lld
- drop old versions
- drop old patches
 2024-07-01 12:59:53 +02:00
Harmen Stoppels
310c435396 netlib-lapack: provide blas and lapack together (#44981) 
If netlib-lapack is built with ~external-blas, it internally links
liblapack.so with libblas.so, meaning that whenever netlib-lapack is
used as a lapack provider, the package must also be a blas provider.

Conversely using netli-lapack as a blas provider does not imply that it
also must provide lapack, but nothing is lost disallowing that...
 2024-07-01 12:53:03 +02:00
Harmen Stoppels
fa3f27e8e7 archive.py: undo unrelated changes from #43851 (#44947) 2024-07-01 11:35:32 +02:00
Harmen Stoppels
6b0fefff29 Use composite stage also for develop specs (#44950) 2024-07-01 11:24:16 +02:00
Massimiliano Culpo
f613316282 Flag propagation: restrict to link/run (#44925) 
In practice people don't care about having their build dependencies reinstalled with say cflags=-O3 if that is what is set at the input spec, so restrict propagation to link/run deps only.

Also simplify the encoding in asp.
 2024-07-01 09:57:51 +02:00
Massimiliano Culpo
1b5b74390f neoverse-v1: restore py-cinemasci (#44976) 
Use a different tactic for determining conflicts.

Give more priority to setting False very old versions.
 2024-07-01 09:53:24 +02:00
Adam J. Stewart
b57f88cb89 JAX: add v0.4.30 (#44964) 2024-07-01 09:02:48 +02:00
Adam J. Stewart
03afc2a1e6 py-scikit-image: add v0.24.0 (#44965) 2024-07-01 09:02:32 +02:00
Adam J. Stewart
1f6ed9324d py-kornia: add v0.7.3 (#44973) 2024-07-01 09:02:12 +02:00
Adam J. Stewart
5559772afa GDAL: add v3.9.1 (#44969) 2024-07-01 09:01:37 +02:00
Adam J. Stewart
8728631fe0 py-keras: add v3.4 (#44968) 2024-07-01 09:01:18 +02:00
Harmen Stoppels
e34d9cbe5f Remove DIYStage (#44949) 2024-07-01 08:33:56 +02:00
Wouter Deconinck
0efba09990 root: depends_on veccore@0.4.0: resp. @0.4.2: when certain versions (#36667) 2024-06-30 19:37:22 -06:00
Wouter Deconinck
a9cb80d792 xl: avoid matching "_r" in tempfile.TemporaryDirectory during audit (#44831) 2024-06-30 17:49:01 -06:00
Teague Sterling
dae6fe711c gobject-introspection: add v1.60.2 (#44643) 
Signed-off-by: Teague Sterling <teaguesterling@gmail.com>
 2024-06-30 20:46:02 +02:00
Massimiliano Culpo
c9a24bc6c5 neoverse-v1: comment out py-cinemasci (#44972) 2024-06-30 10:23:35 +02:00
AcriusWinter
00663f29a9 Strumpack: Changed old test method to new test method (#44874) 
* added try except
* Resolve style issues

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2024-06-28 12:54:03 -07:00
Elliott Slaughter
15a48990b6 legion: Add 24.06.0. (#44951) 2024-06-28 12:20:11 -06:00
fpruvost
af0b898c2e composyx: fix cmake options prefix (#44948) 2024-06-28 09:49:08 -07:00
Massimiliano Culpo
ddf8384bc6 libgpg-error, libassuan: fixes for darwin (#44946) 2024-06-28 18:27:12 +02:00
Mikael Simberg
670f92f42b mold: add v2.32.1 (#44920) 2024-06-28 10:24:22 -06:00