Commit Graph

11082 Commits

Author SHA1 Message Date
Mark W. Krentel
08e53b67f8
hpcviewer: add version 2020.04 (#16332)
* hpcviewer: add version 2020.04

* ibm-java: add version 8.0.6.7
2020-04-27 16:04:02 -05:00
Brian Van Essen
a4b17b9503
cuDNN: Help dependents find libs/includes on Power arch (#16128)
On Power architectures cuDNN will install in a target directory. This
sets cuDNN_ROOT to point to the subdirectory to help dependents use
this install.
2020-04-27 13:15:46 -07:00
Amjad Kotobi
1c45153e00
ecflow added version 4.12.0 (#16327) 2020-04-27 13:19:41 -05:00
Amjad Kotobi
31eff3578f
cmake added version 3.17.1 (#16326) 2020-04-27 13:19:10 -05:00
Benjamin Tovar
505a511af4
update cctools to version 7.1.3 (#16324) 2020-04-27 13:18:44 -05:00
iarspider
a277b96b39
Make mariadb provide mysql-client... (#16322)
... as well as mariadb. Needed for ROOT.
2020-04-27 11:01:48 -05:00
vvolkl
77812845b8
update podio version formatting (#16321)
* update podio version formatting

* [podio] formatting fixes
2020-04-27 11:01:09 -05:00
vvolkl
eda886f627
[dd4hep] url and other fixes (#16320) 2020-04-27 11:00:10 -05:00
Toyohisa Kameyama
d59f7398a3
MODYLAS: New package (#16317) 2020-04-27 10:57:14 -05:00
darmac
5938499be7
Add new package: stinger (#16316) 2020-04-27 10:55:07 -05:00
darmac
81b5475f8e
Add new package: smartdenovo (#16310) 2020-04-27 09:55:35 -05:00
Massimiliano Culpo
fe46919e19
tulip: added new package at v5.4.0 (#16319)
closes #3479

Co-authored-by: Kate Isaacs <kisaacs@cs.arizona.edu>

Co-authored-by: Kate Isaacs <kisaacs@cs.arizona.edu>
2020-04-27 09:54:49 -05:00
George Hartzell
3f54e73025
singularity: better info re post-install step (#16311)
The singularity info should actually suggest where you might find the info about the post-install steps.

Co-authored-by: george.hartzell <george.hartzell@sana.com>
2020-04-27 13:41:04 +02:00
Toyohisa Kameyama
0477f829a2
xabclib: added package at v1.03 (#16271) 2020-04-27 13:33:28 +02:00
asmaahassan90
35717b556b
spglib: added libs property (#16318) 2020-04-27 13:26:10 +02:00
Christoph Junghans
3ea21fef4b
votca-csg: Block gromacs@2020 and newer (#16315) 2020-04-27 04:57:26 -06:00
Toyohisa Kameyama
ca4de491ba
ppOpen-APPL/AMR-FDM: New package (#16199)
* ppOpen-APPL/AMR-FDM: New package

* separate build and install.

* Fix description.
2020-04-26 22:09:06 -05:00
Axel Huebl
4f3cc19ec7
qt: fix macOS w/ AppleClang (mesa libs) (#16302)
Building the `py-jupyter` stack on macOS with AppleClang breaks on
the `py-qtconsole` -> `py-qtconsole` -> `qt +opengl` package build
environment setup with:
```
 ==> Error: AttributeError: Query of package 'mesa' for 'libs' failed
 ...
 ==> Error: Failed to install qt due to ChildError: AttributeError: Query of package 'mesa' for 'libs' failed
```

This tries to add more library targets build by `mesa` to avoid this.
2020-04-26 17:07:13 -07:00
Axel Huebl
199ce66a3c
libpciaccess: mirror (#16312)
Support mirrors for libpciaccess downloads.
2020-04-26 17:06:37 -07:00
Axel Huebl
af7e323f67
libbsd: mirror (#16313)
Add a mirror for `libbsd` to improve fetch stability.
libbsd.freedesktop.org sometimes failes in my nightly CI/CD scripts.
2020-04-26 17:06:27 -07:00
Axel Huebl
e8efeda14a
py-profilehooks (new package) (#16305)
Adds the py-profilehooks package.
2020-04-26 17:08:21 -05:00
Axel Huebl
f202023876
py-blosc (new package) (#16307)
Add the py-blosc python package.
2020-04-26 11:46:40 -05:00
Axel Huebl
31e8d646af
py-h5py: master (new version) (#16306)
Add the `master` branch of h5py as a version.
2020-04-26 11:45:04 -05:00
Adam J. Stewart
63a0647282
PyTorch: disable XNNPACK build (#16304) 2020-04-26 11:29:52 -05:00
Axel Huebl
75042c381c
LLVM lldb 10.0: Python Link Dependency (#16299)
* LLVM: Python Dependency

Effort to expose the linked python library when building LLVM.
This might fix the forward propagation of libintl that comes
with the static python library build on darwin.

* LLDB Py: Remove Ignored Old Flags

Changed in LLVM 10.0+
2020-04-25 21:36:08 -07:00
Adam J. Stewart
4cd537f6c7
py-pyyaml: add new version and variant (#16301) 2020-04-25 15:43:14 -05:00
Adam J. Stewart
b5be99cdb7
libyaml: add new version (#16300) 2020-04-25 15:42:40 -05:00
Sajid Ali
9b0e4cd20b
ucx : add version, modify variants (#16252)
* fixes

* remove extra newline
2020-04-25 12:39:33 -05:00
Adam J. Stewart
9bd0b0fbe1
py-spacy: add new package (#16293) 2020-04-25 10:35:57 -05:00
Jonathon Anderson
b796d2736c
Version bump: jdk 14 (#15821) 2020-04-25 10:35:33 -05:00
Adam J. Stewart
5fce2ac96b
py-thinc: add new package (#16295) 2020-04-24 23:50:56 -05:00
Joseph Ciurej
914f380bb6
Improved the accuracy of the dependencies for the 'visit' package. (#16297)
Added a fix for the 'visit' package when building variant '@3%gcc'.
2020-04-24 21:25:48 -05:00
Adam J. Stewart
b5bf816577
py-preshed: add new package (#16292) 2020-04-24 21:24:33 -05:00
Adam J. Stewart
d0ccab7d17
py-srsly: add new package (#16294) 2020-04-24 20:01:22 -05:00
Adam J. Stewart
dbd0fe8190
py-wasabi: add new package (#16296) 2020-04-24 20:01:09 -05:00
Adam J. Stewart
7a2f47d181
py-plac: add new package (#16291) 2020-04-24 20:00:55 -05:00
Adam J. Stewart
510d8821e5
py-nltk: add new package (#16290) 2020-04-24 20:00:42 -05:00
Adam J. Stewart
0ee023d29f
py-murmurhash: add new package (#16289) 2020-04-24 20:00:28 -05:00
Adam J. Stewart
ab87617d55
py-cymem: add new package (#16288) 2020-04-24 20:00:15 -05:00
Adam J. Stewart
3153610bb8
py-catalogue: add new package (#16287) 2020-04-24 20:00:02 -05:00
Adam J. Stewart
441c16bafb
py-blis: add new package (#16286) 2020-04-24 19:59:48 -05:00
Adam J. Stewart
89914f521e
py-wheel: add new version (#16285) 2020-04-24 19:59:30 -05:00
Adam J. Stewart
0606091775
py-tqdm: add new version (#16284) 2020-04-24 19:59:15 -05:00
Toyohisa Kameyama
051d0d935a
Chainer: New Package. (#16251)
* Chainer: New Package.

* 1. Add maintainers.
2. fix dependency.
3. Add typing-extention@3.6.6 and fix version dependency.

* afixed dependency.

* remove python dependency for version 6.
2020-04-24 11:56:10 -05:00
Adam J. Stewart
433a0b243f
oneDNN: add new version (#16267) 2020-04-23 19:50:22 -05:00
Jeffrey Salmond
9b3a0355bb
add fontconfig as vim dependency (#16268) 2020-04-23 19:50:05 -05:00
Christoph Junghans
a844467c25
eospac: prefer 6.4.0 (#16266) 2020-04-23 15:53:51 -06:00
Mark W. Krentel
686f0e21de
libunwind: add 1.4.0 release and 1.5 stable branch (#16261) 2020-04-23 12:34:19 -05:00
Andrew Gaspar
2a3942fa4c
Rust 1.43.0 (#16260) 2020-04-23 12:33:02 -05:00
Andrew W Elble
d5d232e207
tensorflow: compile against spack-provided protobuf (#16258)
This allows horovod to be built with frameworks=pytorch,tensorflow.

I tracked down the crash I observed in #15719, where loading torch
before tensorflow would cause a crash in:

google::protobuf::internal::(anonymous
namespace)::InitSCC_DFS(google::protobuf::internal::SCCInfoBase*)

The solution is to make tensorflow compile against the protobuf
version Spack provides, instead of allowing it to use it's own.
It's likely we'll want to go after some of the others
that are listed in third_party/systemlibs/syslibs_configure.bzl
in the future.
2020-04-23 11:14:09 -05:00
jthies
ca67df6e3d
phist: don't apply patch to 1.9.0 (#16257) 2020-04-23 11:11:54 -05:00
darmac
6cad7a585d
Go: support for aarch64 (#16083) 2020-04-23 11:01:20 -05:00
darmac
df2cfd26cd
ambari: added package at v2.7.5 (#16149) 2020-04-23 12:43:12 +02:00
Michael Kuhn
b1133cb5db
py-setuptools: added v44.1.0 and v46.1.3 (#16171) 2020-04-23 10:09:09 +02:00
Michael Kuhn
f07cdd7f7a
openssl: added 1.1.1g (#16247) 2020-04-23 10:01:23 +02:00
darmac
807a08a69b
enca: added package at v1.19 (#16255) 2020-04-23 09:59:32 +02:00
Joseph Ciurej
044985af80
cryptopp : added 'shared' variant and sse detection (#16213) 2020-04-23 09:38:10 +02:00
darmac
7c0aee4127
cpp-httplib: added package at v0.5.9 (#16228) 2020-04-23 09:35:14 +02:00
darmac
04457fe031
Py coilmq (#16203)
* Add new package: py-coilmq

* remove FIXME comment

* fix depends_on
2020-04-22 23:13:44 -05:00
darmac
fb1498abac
Add new package: dnsmasq (#16253) 2020-04-22 23:13:04 -05:00
darmac
15882d7868
Add new package: py-django (#16234) 2020-04-22 23:09:06 -05:00
darmac
7299de74c6
Add new package py-sqlparse (#16231)
* Update var/spack/repos/builtin/packages/py-sqlparse/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Add new package py-sqlparse

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-22 20:40:25 -05:00
Axel Huebl
d0bff870a6
macOS+GCC: Conflicts CMake, libuv, CPython (#16249)
The major building blocks in many software stacks:
- CPython
- CMake (libuv)

do not build on macOS with GCC. The main problem is that some macOS
framework includes pull in objective-c code and that code does get
misinterpreted as (invalid) C by GCC by default.
2020-04-22 19:41:33 -05:00
Vicente Adolfo Bolea Sanchez
4166c97a82
vtk-m: update Vtk-m pkg to its latest version v1.5.1 (#16192)
Last month VTK-m releases its lastest version named `v1.5.1`. This new
release only contains bugfixes related to compiler error / warnings.

- Depends on CMake >= 3.12
- Set VTKm_NO_ASSERT=ON by default
- add maintainers

Signed-off-by: Vicente Adolfo Bolea Sanchez <vicente.bolea@kitware.com>
2020-04-22 18:54:55 -05:00
Mark W. Krentel
ec54f86c0b
gotcha: add version 1.0.3 (#16239) 2020-04-22 16:48:41 -05:00
Kelly (KT) Thompson
650745746a
Provide new version 0.6.10. (#16240) 2020-04-22 16:34:58 -05:00
Greg Becker
ec23e4ffe5
update compiler config with bootstrapped compiler when already installed (#16221)
Update compiler config with bootstrapped compiler when it was already installed and added config defaults to code so mutable_config test fixture works.
2020-04-22 14:26:29 -07:00
Adam J. Stewart
46e90692e8
PyTorch: add conflict for Apple Clang 11.0.3 (#16238)
* PyTorch: add conflict for Apple Clang 11.0.3

* Flake8 fix
2020-04-22 15:47:14 -05:00
Tim Haines
0d2ebbf996
hwloc: Add netloc variant (#16001)
hwloc depends on MPI when netloc is enabled. Note that OpenMPI depends on
netloc, so hwloc cannot use OpenMPI as the MPI provider when netloc is
enabled (this would result in a cyclic dependency).
2020-04-22 13:34:32 -07:00
darmac
b874b3e1fe
Add new package: isc-dhcp (#16230) 2020-04-22 11:23:40 -05:00
darmac
169b9bebd8
Add new package: kea (#16232) 2020-04-22 11:17:30 -05:00
darmac
769f350802
Add new package: py-asgiref (#16233) 2020-04-22 11:16:49 -05:00
Rao Garimella
d77576d85d
update Jali version and dependent MSTK version (#16236)
Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
2020-04-22 11:12:28 -05:00
Cameron Smith
e7906d6507
kokkos: generate_makefile calls cmake (#16237) 2020-04-22 11:11:55 -05:00
Sajid Ali
5f285fdd05
fix code-signing on macOS (#15592)
* rebase

* move if statement location

* remove whitespace

* spec to self.spec

* switch statements as per review

* fix erronous indent

* add missing cmake arg

* minor placement fix for cmake args

* edit comment

* fix erronous return

* clarify conflicts with messages

* remove duplicate comment

* simplify logic

* macos wasn't a variant, fix that

* remove extra blank line

* address reviewer comments on spaces
2020-04-22 09:49:07 -05:00
darmac
2a5592f419
Add new package: py-pid (#16202)
* Add new package: py-pid

* fix depends_on
2020-04-22 09:47:45 -05:00
asmaahassan90
d65b809f9b
Add new versions to Avizo (#16204)
* Add new versions

add versions 2019.3 and 2019.4 and adjust the install stage accordingly

* one small fix

* fix lint

* re-ordering the versions
2020-04-22 09:44:03 -05:00
Joseph Ciurej
0419f2c6df
Updated 'qt' to support '@5.12.7', '+debug', and '+opengl' with older OpenGL versions. (#16220) 2020-04-22 09:29:40 -05:00
Kelly (KT) Thompson
9c2819bdb3
libsm: added libuuid as dependency (#16226)
While building _visit_, I ran into an undefined symbol at link time. I tracked
the missing dependency to _libsm_ needing to know about _libuuid_ at link time.
2020-04-22 14:53:01 +02:00
darmac
be0aed9d8a
libcgroup: added package at v0.41 (#16229) 2020-04-22 13:19:01 +02:00
Jeffrey Salmond
b065150354
metis: fix build when version > 5.0 (#16186) 2020-04-22 12:18:38 +02:00
Elizabeth Fischer
0b753b9a77
py-pyproj: added v2.6.0 (#16176)
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
2020-04-22 11:50:36 +02:00
Servesh
3e9af610e7
source-highlight: fix detection of boost (#16102)
Co-Authored-By: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-04-22 11:43:02 +02:00
darmac
ab35780fae
buddy: added package at v2.4 (#16166) 2020-04-22 10:55:07 +02:00
darmac
4c9c6b2a68
linux-pam: added package at v1.3.1 (#16137)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-22 10:53:28 +02:00
darmac
1e243023d8
cmaq: added new package at v5.3.1 (#16224)
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-22 08:56:13 +02:00
jthies
ac228050ab
Phist int64 variant (#16209)
* phist: add int64 variant and resulting conflicts and dependencies

* phist: use Trilinos TPLs as soon as they are in the spec, not just if +trilinos isexplicitly set
and remove a redundant depends-statement

* phist: use int as gotype for Trilinos dependency if ~int64

* phist: new version 1.9.0

* phist: remove trailing whitespace

* phist: updated checksum (version tag was moved)
2020-04-21 23:10:11 -05:00
darmac
1289d3589a
Add new package: cmockery (#16225) 2020-04-21 23:01:49 -05:00
Axel Huebl
2f7e940872
Fix: Flex Reconfigure (#16194)
* Fix: Flex Reconfigure

Learn the `flex` package how to reconfigure itself when needed.
Fix #11551

Co-authored-by: Andrew W Elble <aweits@rit.edu>

* Autoreconf: only when actually desired

Co-authored-by: Andrew W Elble <aweits@rit.edu>
2020-04-21 22:36:02 -05:00
Andrew Gaspar
667fee0703
catch2 2.12.1 (#16211) 2020-04-21 16:52:50 -07:00
Joseph Ciurej
272c47207d
Updated the 'opengl' package to include all older versions of the library. (#16219) 2020-04-21 16:20:45 -05:00
Adam J. Stewart
54ca52943d
PyTorch: add 1.5.0 (#16212) 2020-04-21 16:20:11 -05:00
Michael Kuhn
f3aceddbfb
py-tap-py: Add 3.0 and 2.6.2 (#16169) 2020-04-21 16:09:14 -05:00
Gregor Daiß
745804582b
Add new package: sgpp (#15961)
* sgpp: Added recipe

* sgpp: Removed maintainer and updated patch

* sgpp: Added more conflicts

* sgpp: Added conflicts for older combigrid versions

* sgpp: Added one more maintainer

* sgpp: Add version 3.3.0 and sane defaults

* sgpp: Better description and c++11 conflicts

* sgpp: Updated maintainers

* sgpp: Fix flake8 errors

* sgpp: Fix dependencies and minor issues

- Added py-setuptools dependency
- Fixed zlib link dependency
- Added git url
- Using spec.satisfies where appropriate

* sgpp: Added testing to package

* sgpp: Remove simd variant and use spec instead

* sgpp: Remove java variant

* sgpp: Small bugfixes

* sgpp: Add datadriven patch and patch explanations
2020-04-21 16:03:46 -05:00
Glenn Johnson
74c159b883
New package: sumo (#16096)
* New package: sumo

This PR adds the sumo package, as well as the fox package as a
dependency. It also updates and adds some fixes for openscenegraph.

For fox, the patch is for the development version. That patch should not
be necessary in future versions as it has been applied upstream. The
stable version is 1.6.57 and is marked as preferred. This is the version
needed for sumo.

Added dependencies for openscenegraph as well as set constraints on qt
versions.

* Update var/spack/repos/builtin/packages/sumo/package.py

I had intended to set this version constraint but somehow did not.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Add dependency types to sumo recipe

- googletest: 'test'
- swig: 'build'
- java: 'build', 'run'

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-21 13:27:34 -05:00
Adam J. Stewart
4f5bd044d6
py-torchvision: add new version (#16208) 2020-04-21 11:43:30 -05:00
Michael Kuhn
b9655636ce
gettext: Fix typo (#16206) 2020-04-21 08:48:48 -07:00
Andrew Gaspar
a41b9365a9
catch2: added v2.12 (#16207) 2020-04-21 17:15:59 +02:00
Michael Kuhn
cd5d477db9
qgis: Fix pkgconfig dependency (#16188) 2020-04-21 08:02:45 -05:00
Axel Huebl
6c8e15ee18
gettext: add missing iconv dependency (#16193)
`gettext` will pick up a random `iconv` dependency if not
specified, which crashes python and its own builds on macOS.
2020-04-20 21:47:04 -07:00