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9834 Commits

Author SHA1 Message Date
Jonathan R. Madsen
e46548c3b8 Updated version to include v3.0.1 (#14353) 
* Updated version to include v3.0.1

- this patch has a rather critical MT fix

* Update package.py

- Moved 3.0.1 above 3.0.0
 2020-01-02 19:17:54 -06:00
Christoph Junghans
70184c6ea2 fix url for mantevo packages (#14366) 2020-01-02 19:17:32 -06:00
Glenn Johnson
ba0e144b07 Set preferred version of perl-bioperl (#14354) 
Due to formatting differences, the older version of perl-bioperl was
getting picked up as the preferred version. This PR explicitly sets the
newer version to be preferred.
 2020-01-02 15:29:35 -06:00
Matthieu Dorier
8e70fa52df added verbose variant to mercury package (#14355) 2020-01-02 15:29:18 -06:00
Gilles Gouaillardet
19c1312eb4 gromacs: depend on hwloc v1 (#14343) 
Because of a bug in the current concretizer,
spack install gromacs
fails because gromacs depends on hwloc (default is v2), and Open MPI
(the default MPI library) depends on hwloc v1.
As discussed in https://github.com/spack/spack/issues/14339, this
workaround should be removed once the concretizer is fixed

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2020-01-02 15:16:22 -06:00
Adam J. Stewart
e26f517daf py-scikit-learn: add 0.22.1 (#14350) 2020-01-02 15:15:49 -06:00
Mike Kiernan
85fc6448f8 osu-micro-benchmarks: added version 5.6.2 (#14352) 2020-01-02 15:15:21 -06:00
Sinan
456aae2627 new package: py-zarr (#14326) 
* create package py-zarr

* specify setuptools versions

* add more dependencies, improve style

* Update var/spack/repos/builtin/packages/py-zarr/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-zarr/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-zarr/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* add dependencies, remove python version constraint

* remove windows specific dependency

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-01-02 13:07:48 -06:00
Adam J. Stewart
3f190a432e MKL: set appropriate CMake env vars (#14274) 2020-01-02 12:41:42 -06:00
Sinan
de73121ebd new package: py-numcodecs (#14330) 
* new package: py-numcodecs

* make msgpack variant
 2020-01-01 23:09:29 -06:00
Adam J. Stewart
7a97dc3770 py-numpy: add 1.17.5 (#14341) 2020-01-01 15:05:23 -06:00
Sinan
5ddbd2fa6c new package: py-msgpack (#14329) 
* new package: py-msgpack

* remove python dependency

* remove cython dependency
 2019-12-31 15:14:40 -06:00
Jonathan R. Madsen
026534dadb Updated versions and more variants (#14310) 
* Updated versions and more variants

- Added 'develop' and '3.0.0' versions
- Added 'tau', 'upcxx', 'gotcha', and 'likwid'

* Added conflict handling for +cupti~cuda

* Removed extra cmake args line
 2019-12-31 13:33:41 -06:00
darmac
b70a5245f2 add new package : libfastcommon (#14303) 
* add new package : libfastcommon

* update libfastcommon install()
 2019-12-31 11:46:07 -06:00
darmac
e92f6c70a6 add new package : moosefs (#14305) 
* add new package : moosefs

* remove no-need depens : zlib
 2019-12-31 11:45:45 -06:00
darmac
9ff6079986 add new package : opentsdb (#14317) 
* add new package : opentsdb

* remove redundant url_for_version()
 2019-12-31 11:43:27 -06:00
Glenn Johnson
9a0fd8db9a New package - zziplib (#14318) 
This PR adds the zziplib package.
 2019-12-31 11:42:59 -06:00
Sinan
62cd7e4490 new package: py-asciitree (#14327) 
* new package: py-asciitree

* fix typo
 2019-12-31 11:39:43 -06:00
Mark Olesen
3bf7998bb5 Add OpenFOAM 1912 (#14322) 2019-12-31 11:19:05 -06:00
Todd Gamblin
4af6303086 copyright: update copyright dates for 2020 (#14328) 2019-12-30 22:36:56 -08:00
Adam J. Stewart
0699f8ac9d Add py-numpy 1.16.6 (#14313) 2019-12-29 20:04:04 -06:00
Glenn Johnson
25f217f5f2 Add support for graphite2 support to harfbuzz (#14300) 
This PR adds graphite2 support to harfbuzz. This PR depends on PR #14299, which added the graphite2 package to spack.
 2019-12-29 12:40:09 -06:00
darmac
855f9afa6e add new package : jafka (#14304) 2019-12-28 12:20:55 -06:00
Glenn Johnson
bd345e16b8 New package - TECkit (#14301) 
This PR adds the teckit package to spack.
 2019-12-28 12:20:20 -06:00
Glenn Johnson
12692424a7 New package - graphite2 (#14299) 
* New package - graphite2

This PR adds the Graphite2 package to Spack.

* Replace smart quotes with standard quotes
 2019-12-28 12:19:21 -06:00
Glenn Johnson
2166a91ec5 New package - libpaper (#14302) 
This PR adds the paper library to spack.
 2019-12-27 15:18:16 -08:00
Gregory Lee
6c957b6b62 added build dependences required after cairo package change (#14297) 
* added build dependences required after cairo package change

* fixed pango build dependencies
 2019-12-27 12:13:50 -06:00
Gregory Lee
08898a2ad7 patch cairo build files for build without fontconfig fixes #14112 (#14296) 
* patch cairo build files for build without fontconfig

* added build dependencies for cairo
 2019-12-26 16:20:16 -06:00
asmaahassan90
3315700da9 Add Avizo Recipe (#12792) 
* Add Avizo Recipe

* make changes as per review

* fix home url and linting

* Fix url

* fix identation

* change checksum to sha256 instead of md5

* fix installation

* fix lint

* fix identation

* make it compatible with python 2.6

* enhancing recipe and fixing avizo licensing

changes as per suggestions from reviewer; fix licensing

* fix identation

* use new setup_run_environment function
 2019-12-26 14:43:51 -06:00
t-karatsu
c7f1e2835b aspa: Fix common errors. (#14295) 
* aspa: Fix common errors.

* defined new member 'Vec_value_type' in 'self' namespace.

* fix narrowing error.

* fix patch about typecast.
 2019-12-26 14:42:59 -06:00
Matthias Diener
6a084a8289 intel-pin: add version 3.11 (#14292) 2019-12-24 10:06:51 -06:00
Matthias Diener
37c1d2d004 cmake: add version 3.16.2 (#14291) 2019-12-24 10:05:54 -06:00
Matthias Diener
ee8bc0df98 scons: add version 3.1.2 (#14290) 2019-12-24 10:05:18 -06:00
健美猞猁
748c552992 Bump nektar to 5.0.0. (#14288) 2019-12-24 10:01:16 -06:00
Gregory Lee
99dee90372 added master branch version to mpip (#14284) 2019-12-23 17:24:19 -06:00
Christoph Junghans
643cc95055 gromacs: add v2019.5 (#14285) 2019-12-23 17:24:03 -06:00
Nicholas Sly
9573fa2299 Added conflict with %pgi in libpciaccess package.py with relevant links in comments. (#14281) 2019-12-23 15:31:59 -06:00
Piotr Luszczek
ae8a72c0da netlib-scalapack: Add int overflow patch (#14276) 2019-12-23 13:06:29 -06:00
Adam J. Stewart
e2ec1c76ce Add py-boto3 1.10.44 (#14271) 2019-12-22 21:39:25 -06:00
Timo Heister
fa0d710626 add new package : libdap4 (#14267) 2019-12-22 21:36:47 -06:00
Adam J. Stewart
ded5cbec70 Add py-numpy 1.18.0 (#14269) 2019-12-22 21:36:28 -06:00
Adam J. Stewart
0950442ea0 Add awscli 1.16.308 (#14270) 2019-12-22 21:36:14 -06:00
Adam J. Stewart
013ff54731 Add py-botocore 1.13.44 (#14272) 2019-12-22 21:35:39 -06:00
Piotr Luszczek
2a3bf87484 Add new release and remove extraneous patches (#14273) 2019-12-22 18:10:19 -08:00
Glenn Johnson
3690bc44bd Set full xiar path when building cp2k with intel compiler (#14268) 2019-12-22 16:19:12 -06:00
justbennet
b83365c945 Updating preferred OpenMPI version to 3.1.5 (#14266) 2019-12-22 11:59:21 -08:00
Axel Huebl
249c1d9d81 openPMD-api: 0.10.3 (#14265) 
Add latest release.
 2019-12-22 10:01:28 -06:00
xfzhao
a10253a667 new module beagle (#14257) 2019-12-21 18:22:56 -06:00
Sajid Ali
8fe2c0a4fe Bump py-slepc4py version, update url (#14264) 
* version bump

	modified:   var/spack/repos/builtin/packages/py-slepc4py/package.py

* slepc: update URL
slepc4py: add 3.11.0 and update maintainers

Co-authored-by: Satish Balay <balay@mcs.anl.gov>
 2019-12-21 18:22:40 -06:00
Sajid Ali
8522d1f0cf build bazel with jdk (#14258) 
* build bazel with jdk

* Flake 8

* Fix typo
 2019-12-20 19:40:05 -06:00