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Author SHA1 Message Date
Ashwin Kumar
6ee6844473 Octopus : Separate serial and MPI dependencies (#33836) 
* replace mpi as a variant instead of dependency 
* separate serial and MPI dependencies
* configure args depending on serial or mpi variant
* reformat with black
 2022-11-17 04:34:03 -07:00
Adam J. Stewart
69822b0d82 py-torchmetrics: add v0.10.3 (#33962) 2022-11-17 11:18:57 +01:00
Michael Kuhn
93eecae0c3 Add sgid notice when running on AFS (#30247) 2022-11-17 09:17:41 +01:00
Massimiliano Culpo
61f5d85525 Python: fix bug detection, trying to access self (#33955) 
Typo introduced in #33847
 2022-11-17 08:38:49 +01:00
Ben Boeckel
a90e86de75 zlib, openssl: return to http URLs (#33324) 
In #3113, `https` was removed to ensure that `curl` can be bootstrapped
without SSL being present. This was lost in #25672 which aimed to use
`https` where possible.

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
 2022-11-16 22:25:55 -07:00
Stephen Sachs
7247a493ab [xz] icc does not support attribute __symver__ (#33839) 
xz have added attribute __symver__ for compilers that identify as GCC>=10.0 via
__GNUC__. Intels `icc` sets __GNUC__ but currently does not support this
attribute:
https://community.intel.com/t5/Intel-C-Compiler/symver-not-supported/m-p/1429028/emcs_t/S2h8ZW1haWx8dG9waWNfc3Vic2NyaXB0aW9ufExBQVRWMjIyUFFZTlZTfDE0MjkwMjh8U1VCU0NSSVBUSU9OU3xoSw#M40459
 2022-11-16 20:06:41 -07:00
Sergey Kosukhin
cd8ec60ae9 serialbox: update patch to handle UTF-8 conversion errors (#33317) 2022-11-16 20:06:28 -07:00
Manuela Kuhn
fe597dfb0c py-jupyter-server: add 1.21.0 (#33310) 2022-11-16 20:02:20 -07:00
Brian Vanderwende
c721aab006 lib/spack/spack/store.py: Fix #28170 for padding relocation (#33122) 2022-11-17 03:56:00 +01:00
Manuela Kuhn
6a08e9ed08 py-jupyterlab: add 3.4.8 (#33308) 2022-11-16 19:53:59 -07:00
Christian Kniep
7637efb363 blast-plus: update to 2.13.0 and add cpio as build dependency (#33187) 2022-11-17 03:42:25 +01:00
Sebastian Grabowski
b31f1b0353 * ninja: Set min. required version of re2c dependency, fixes #33127 (#33128) 
Reviewed-by: haampie, bernhardkaindl
 2022-11-17 03:28:06 +01:00
Jonathon Anderson
497682260f gettext: On ppc64le, for older versions, use system cdefs.h (#33411) 
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
 2022-11-17 02:55:02 +01:00
Massimiliano Culpo
e47beceb8a Clean unit-test workflow file (#33945) 
Delete statements related to Python 2.7, and avoid installing
patchelf since now we can bootstrap it.
 2022-11-16 23:28:49 +01:00
chenwany
067976f4b8 updated v2.11.8 (#33944) 2022-11-16 13:04:15 -08:00
Greg Becker
1263b5c444 initial implementation of slingshot detection (#33793) 2022-11-16 13:01:37 -08:00
psakievich
90f0a8eacc Upstreams: add canonicalize path (#33946) 2022-11-16 14:37:32 -06:00
John W. Parent
61a7420c94 Windows bootstrapping: remove unneeded call to add dll to PATH (#33622) 
#32942 fixed bootstrapping on Windows by having the core Spack
code explicitly add the Clingo package bin/ directory as a
DLL path.

Since then, #33400 has been merged, which ensures that the Python
module installed by the Spack `clingo` package can find the DLLs
in bin/.

Note that this only works for Spack instances which have been
bootstrapped after #33400: for installations bootstrapped before
then, you will need to run `spack clean -b` (this would only
be needed for Spack instances running on Windows).
 2022-11-16 12:04:57 -08:00
Stephen Sachs
39a1f1462b SIP build system: fix "python not defined in builder" (#33906) 
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
 2022-11-16 13:36:25 -06:00
Wouter Deconinck
6de5d8e68c qt: new version 5.15.6 and 5.15.7 (#33933) 2022-11-16 11:35:01 -07:00
Robert Underwood
b0f2523350 add sz3 and mdz smoke test for inclusion in e4s (#33864) 
* add sz3 and mdz smoke test

Co-authored-by: Robert Underwood <runderwood@anl.gov>
 2022-11-16 10:05:43 -08:00
snehring
bc8cc39871 py-isal: use external libisal (#33932) 
* py-isal: adding some missing build deps

* py-isal: use external libisal
 2022-11-16 10:58:15 -07:00
Pat Riehecky
b36a8f4f2e New Package: rarpd (#28686) 2022-11-16 08:29:58 -07:00
Harmen Stoppels
0a952f8b7b docs updates for spack env depfile (#33937) 2022-11-16 15:47:31 +01:00
Matthias Wolf
26a0384171 neovim: fix build dependencies (#33935) 
Buildin neovim@0.8.0 complains (for me) about Lua's lpeg and mpack
packages not being available at build time. Removing the link-only
setting in the dependencies for these two packages fixes the build for
me.
 2022-11-16 07:30:08 -07:00
Harmen Stoppels
d18cccf7c5 spack env depfile in Gitlab CI should use install-deps/pkg-version-hash target (#33936) 2022-11-16 14:02:56 +00:00
Kevin Broch
fbe6b4b486 Change code suggestions to output black formatter compliant code (#33931) 2022-11-16 12:08:20 +01:00
Nathalie Furmento
5fe08a5647 starpu: add v1.3.10 (#33934) 2022-11-16 12:04:31 +01:00
Vanessasaurus
ac2fc4f271 Automated deployment to update package flux-core 2022-11-09 (#33780) 
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
 2022-11-16 11:58:51 +01:00
Adam J. Stewart
93430496e2 Getting Started: Python 2 is no longer supported (#33927) 2022-11-16 08:36:49 +01:00
Michael Kuhn
901b31a7aa docs: fix typo (#33926) 2022-11-15 16:06:12 -08:00
Garrett Morrison
0cec2d3110 zfp: update for version 1.0.0 (#33452) 
* zfp: updates and many fixes for version 1.0.0

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
 2022-11-15 16:21:57 -07:00
Satish Balay
40e4884e8b xsdk: add version @0.8.0 (#33794) 
- enable sundials+magma+ginkgo
- enable dealii+sundials
- disable dealii~cgal due to build errors
- enable petsc+rocm
- enable slepc+cuda+rocm
- enable strumpack+cuda+slate
- enable slate build with non-gcc compilers
- enable pumi+shared
- enable mfem+shared
- enable ginkgo+mpi
- add hiop
- and exago
  - use exago~ipopt due to mumps~mpi conflict with mpi.h)
  - add raja variant [used by exago/hiop]
    ~raja builds exago in pflow-only mode - i.e exago~hiop~ipopt~python~cuda ^hiop~cuda [Default on MacOS]

Co-authored-by: Cody Balos <balos1@llnl.gov>
 2022-11-15 16:52:58 -06:00
Jean-Luc Fattebert
f18425a51f Update BML versions list in package.py (#33920) 
* Update BML versions list in package.py
* Update package.py
 2022-11-15 14:08:10 -08:00
Massimiliano Culpo
472893c5c4 Run Python 3.6 unit tests on ubuntu-20.04 (#33918) 2022-11-15 22:33:11 +01:00
SXS Bot
289bbf74f6 spectre: add v2022.11.15 (#33921) 
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
 2022-11-15 13:05:02 -08:00
Harmen Stoppels
a0182c069f Show time per phase (#33874) 2022-11-15 21:10:07 +01:00
Erik Schnetter
4ecb6ecaff meson: add new version 0.64.0 (#33880) 2022-11-15 12:42:11 -07:00
Saqib Khan
d5193f73d8 New Package: Prime95/Mprime (#33895) 
* New Package: Prime95/Mprime
* Fix trailing whitespaces in prime95
* Fix checksum for prime95

Signed-off-by: saqibkh <saqibkhan@utexas.edu>
 2022-11-15 11:39:02 -08:00
Brent Huisman
1aab5bb9f2 Add v0.8 to Arbor (#33916) 2022-11-15 12:57:29 -06:00
Erik Schnetter
8dda4ff60b nsimd: Update Python requirements (#33879) 
We need Python 3.0:3.9
 2022-11-15 10:05:14 -08:00
iarspider
0811f81a09 thepeg: make rivet dependency optional... (#33912) 
* thepeg: make rivet dependency optional...
* add "libs" variant, move compiler flags to flag_handler

Co-authored-by: iarspider <iarspider@users.noreply.github.com>
 2022-11-15 09:36:15 -08:00
Harmen Stoppels
af74680405 depfile: improve tab completion (#33773) 
This PR allows you to do:

```
spack env create -d .
spack -e . add python
spack -e . concretize
spack -e . env depfile -o Makefile

make in<tab>              # -> install
make install-<tab>        # -> install-deps/
make install-deps/py<tab> # -> install-deps/python-x.y.z-hash
make install/zl<tab>      # -> install/zlib-x.y.z-hash

make SP<tab>              # -> make SPACK
make SPACK_<tab>          # -> make SPACK_INSTALL_FLAGS=
```
 2022-11-15 18:03:17 +01:00
Harmen Stoppels
d1715c5fdf Fixup: start the timer before the phase (#33917) 2022-11-15 16:52:43 +01:00
Harmen Stoppels
b245f1ece1 Fix incorrect timer (#33900) 
Revamp the timer so we always have a designated begin and end.

Fix a bug where the phase timer was stopped before the phase started,
resulting in incorrect timing reports in timers.json.
 2022-11-15 16:33:47 +01:00
Harmen Stoppels
e10c47c53d glib: add missing libelf dep (#33894) 2022-11-15 07:18:10 -07:00
Harmen Stoppels
0697d20fd4 openssh: add libxcrypt (#33892) 2022-11-15 06:58:12 -07:00
Brian Van Essen
fd4f905ce5 External find now searches all dynamic linker paths (#33800) 
Add spack.ld_so_conf.host_dynamic_linker_search_paths

Retrieve the current host runtime search paths for shared libraries;
for GNU and musl Linux we try to retrieve the dynamic linker from the
current Python interpreter and then find the corresponding config file
(e.g. ld.so.conf or ld-musl-<arch>.path). Similar can be done for
BSD and others, but this is not implemented yet. The default paths
are always returned. We don't check if the listed directories exist.

Use this in spack external find for libraries.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2022-11-15 14:48:15 +01:00
Harmen Stoppels
d36c7b20d2 python: missing libxcrypt dep (#33847) 
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-11-15 14:36:16 +01:00
Harmen Stoppels
2948248d7a Remove exit(0) (#33896) 
Since they cause --backtrace to report backtraces even with exit code 0
 2022-11-15 14:35:44 +01:00