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Author SHA1 Message Date
John W. Parent
5c742d4f2b Hraden Spack's powershell interface (#37079) 
Paths with spaces are an issue on Windows and our current powershell
scripts are not sufficiently hardended against their use.
This PR removes promlematic commandlets that do not work well with paths
with spaces and adds escape quotes in other areas where this could be an
issue.
 2023-04-21 08:58:37 -05:00
markus-ferrell
c64ca97877 Enable verify tests on windows (#36975) 2023-04-21 14:32:33 +02:00
markus-ferrell
cd4dddbef1 Enable versions cmd tests on windows (#36974) 2023-04-21 14:31:14 +02:00
markus-ferrell
e77b1da772 Enable test suite tests on windows (#36966) 2023-04-21 14:18:06 +02:00
markus-ferrell
e1e8d3b66e Enable database tests for windows (#36968) 2023-04-21 14:15:29 +02:00
markus-ferrell
962df6334d Enable config values tests on windows (#36969) 2023-04-21 14:15:09 +02:00
markus-ferrell
ba255cf5ec Enable graph tests on windows (#36967) 2023-04-21 14:14:51 +02:00
Annop Wongwathanarat
2ca049e74a armpl-gcc: fix PKG_CONFIG_PATH for 23.04 (#37001) 2023-04-21 14:10:03 +02:00
snehring
cd2893640d interproscan: add version 5.61-93.0, fix build issue (#37009) 2023-04-21 14:05:23 +02:00
Glenn Johnson
b686974160 augustus: add version 3.5.0 (#37037) 
Adjust dependencies and constraints.
 2023-04-21 12:01:00 +02:00
Eric Brugger
3303dcbfbd VisIt: add v3.3.3. (#37034) 2023-04-21 11:59:20 +02:00
Glenn Johnson
950079845c zziplib: support multiple build systems (#37058) 
This PR rewrites the zziplib recipe to use Spack's multiple build system
support.
 2023-04-21 11:58:00 +02:00
Brian Vanderwende
57b56499b2 Add flag handler for mpi-serial (#37060) 2023-04-21 11:55:30 +02:00
Glenn Johnson
00715a66a1 arpack-ng: add version 3.9.0 (#37032) 2023-04-21 11:43:33 +02:00
dependabot[bot]
581bd6bb9a build(deps): bump codecov/codecov-action from 3.1.2 to 3.1.3 (#37077) 
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3.1.2 to 3.1.3.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)
- [Commits](40a12dcee2...894ff025c7)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-04-21 11:41:06 +02:00
dependabot[bot]
056eb659bb build(deps): bump actions/setup-python from 4.5.0 to 4.6.0 (#37078) 
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.5.0 to 4.6.0.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](d27e3f3d7c...57ded4d7d5)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-04-21 11:40:37 +02:00
Thomas Madlener
6476b2d79c edm4hep: add v0.8 (#37006) 2023-04-21 11:31:42 +02:00
Ashwin Kumar Karnad
a2078d709b octopus: add v12.2 (#35487) 2023-04-21 11:30:30 +02:00
Ashwin Kumar Karnad
c8ad4807c2 octopus: fix download links (#37081) 2023-04-21 05:22:34 -04:00
Harmen Stoppels
7cf53a647e readline: fix for nvhpc (#37024) 2023-04-21 11:02:55 +02:00
Massimiliano Culpo
cac44b9e15 Update archspec to latest release (#37070) 
Fix -mcpu flags for gcc on neoverse-v1

Add support for NVHPC flags
 2023-04-21 11:01:37 +02:00
Wouter Deconinck
354d59500b glib: new versions 2.76.1, 2.74.7 (#36361) 
* glib: new version 2.76.1

This adds a new stable version of glib, 2.76.1 (skipping the 2.75 unstable series).

`mkenums.py` check now is specified as a dict, after r62dca6c1cf. The `filter_file` should disable both old and new. Better (maybe, but more complicated) would be to add the `can_fail` flag for this test.

The `iconv` argument was already deprecated and has now been removed. It is now resolved through meson itself, e71ecc8771.

Builds successfully on my system (and several dependents on top of it):
```console
==> glib: Successfully installed glib-2.76.1-7iy4mee2evabd357gviozbtyh5yxi27t
```
as does the previous 2.74.6 version

* glib: patch for 2.76.1, new version 2.74.7
 2023-04-21 10:25:55 +02:00
Paul R. C. Kent
a639b22c7c add-llvm-1601-1602 (#37026) 2023-04-20 19:56:52 -07:00
Wouter Deconinck
4f13e2fa15 py-ocnn: new package (octree-based sparse CNN) (#37030) 
O-CNN is an octree-based sparse convolutional neural network framework for 3D deep learning. It is built on py-torch.
 2023-04-20 21:43:47 -05:00
Bernhard Kaindl
e3109a96d4 bcache: Simplify check if -lintl shall be added to LDFLAGS (#36569) 
Replace my initial libintl check with the much nicer check for
"intl" in self.spec["gettext"].libs.names. Thanks to Chris Green!

Co-authored-by: Bernhard Kaindl <bkaindl@gmail.com>
 2023-04-20 18:56:49 -07:00
Pariksheet Nanda
0b606b01dc uqtk: bump (#36670) 
1. support version 3.1.3, which now depends on sundials@6

2. support version 3.1.2:, which broke the two patch files and
   therefore the two patch files have been replaced by more flexible
   filter_file() commands inside a patch() function.

3. rename the variant for python extension from using the package name
   "+pyuqtk" to the more standard "+python"

4. add maintainers @omsai and the upstream developer @bjdebus who
   offered to help with the spack packaging.

5. swig should only be a build-time dependency.  swig is only
   necessary until @:3.1.0

6. confirmed python dependencies are correct by inspecting imports,
   subset python dependencies type to build, run, and confirmed all
   31 build-time tests pass including the 9 python tests:

```console
$ spack env create uqtk-dev
$ spack add uqtk@3.1.3
$ spack install --test root && cat $(spack location -i uqtk)/.spack/install-time-test-log.txt
==> Testing package uqtk-3.1.3-nok6fut
==> [2023-04-19-14:56:25.005361] Running build-time tests
==> [2023-04-19-14:56:25.005536] RUN-TESTS: build-time tests [check]
==> [2023-04-19-14:56:25.009543] '/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/gmake-4.4.1-b6g4apmfvxz3bn4eabh37dehcrg65fj7/bin/make' '-j4' '-n' 'test'
==> [2023-04-19-14:56:25.014903] '/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/gmake-4.4.1-b6g4apmfvxz3bn4eabh37dehcrg65fj7/bin/make' '-j4' 'test'
Running tests...
/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/cmake-3.26.3-zjmsfz23j5l4ytniz26uzvxonlu5qebr/bin/ctest --force-new-ctest-process
Test project /tmp/omsai/spack-stage/spack-stage-uqtk-3.1.3-nok6fut47h42cnaau7wkoohgqy5f2qqa/spack-build-nok6fut
      Start  1: ArrayReadAndWrite
      Start  2: ArrayDelColumn
      Start  3: Array1DMiscTest
      Start  4: Array2DMiscTest
 1/31 Test  #1: ArrayReadAndWrite ................   Passed    0.01 sec
      Start  5: ArraySortTest
 2/31 Test  #2: ArrayDelColumn ...................   Passed    0.01 sec
      Start  6: MultiIndexTest
 3/31 Test  #3: Array1DMiscTest ..................   Passed    0.01 sec
      Start  7: CorrTest
 4/31 Test  #4: Array2DMiscTest ..................   Passed    0.01 sec
      Start  8: QuadLUTest
 5/31 Test  #5: ArraySortTest ....................   Passed    0.02 sec
      Start  9: MCMC2dTest
 6/31 Test  #6: MultiIndexTest ...................   Passed    0.01 sec
      Start 10: MCMCRandomTest
 7/31 Test  #8: QuadLUTest .......................   Passed    0.02 sec
      Start 11: MCMCNestedTest
 8/31 Test #10: MCMCRandomTest ...................   Passed    0.02 sec
      Start 12: Deriv1dTest
 9/31 Test #12: Deriv1dTest ......................   Passed    0.01 sec
      Start 13: SecondDeriv1dTest
10/31 Test #13: SecondDeriv1dTest ................   Passed    0.01 sec
      Start 14: GradHessianTest
11/31 Test #11: MCMCNestedTest ...................   Passed    0.03 sec
      Start 15: GradientPCETest
12/31 Test #14: GradHessianTest ..................   Passed    0.01 sec
      Start 16: PCE1dTest
13/31 Test #15: GradientPCETest ..................   Passed    0.01 sec
      Start 17: PCEImplTest
14/31 Test #16: PCE1dTest ........................   Passed    0.01 sec
      Start 18: PCELogTest
15/31 Test #18: PCELogTest .......................   Passed    0.01 sec
      Start 19: Hessian2dTest
16/31 Test #19: Hessian2dTest ....................   Passed    0.01 sec
      Start 20: BCS1dTest
17/31 Test #20: BCS1dTest ........................   Passed    0.01 sec
      Start 21: BCS2dTest
18/31 Test #21: BCS2dTest ........................   Passed    0.01 sec
      Start 22: LowRankRegrTest
19/31 Test #22: LowRankRegrTest ..................   Passed    0.01 sec
      Start 23: PyModTest
20/31 Test #17: PCEImplTest ......................   Passed    0.07 sec
      Start 24: PyArrayTest
21/31 Test #23: PyModTest ........................   Passed    0.08 sec
      Start 25: PyArrayTest2
22/31 Test #25: PyArrayTest2 .....................   Passed    0.30 sec
      Start 26: PyQuadTest
23/31 Test #24: PyArrayTest ......................   Passed    1.44 sec
      Start 27: PyBCSTest1D
24/31 Test #26: PyQuadTest .......................   Passed    1.68 sec
      Start 28: PyBCSTest2D
25/31 Test #27: PyBCSTest1D ......................   Passed    1.66 sec
      Start 29: PyBADPTest
26/31 Test  #7: CorrTest .........................   Passed    3.43 sec
      Start 30: PyRegressionTest
27/31 Test #28: PyBCSTest2D ......................   Passed    1.50 sec
      Start 31: PyGalerkinTest
28/31 Test  #9: MCMC2dTest .......................   Passed    3.90 sec
29/31 Test #29: PyBADPTest .......................   Passed    1.66 sec
30/31 Test #30: PyRegressionTest .................   Passed    1.72 sec
31/31 Test #31: PyGalerkinTest ...................   Passed    1.63 sec

100% tests passed, 0 tests failed out of 31

Total Test time (real) =   5.35 sec
==> [2023-04-19-14:56:30.382797] '/home/omsai/src/spack/opt/spack/linux-pureos10-skylake/gcc-10.2.1/gmake-4.4.1-b6g4apmfvxz3bn4eabh37dehcrg65fj7/bin/make' '-j4' '-n' 'check'
==> [2023-04-19-14:56:30.385983] Target 'check' not found in Makefile
```
 2023-04-20 18:53:39 -07:00
afzpatel
134b954c7f enabling test for rccl hsakmt-roct and rocm-opencl (#35465) 
* initial commit for enabling test for rccl hsakmt-roct and rocm-opencl
* fix styling and cleaning code
* adding missing imports and minor fixes
* minor style fix
* moidfying hsakmt-roct test to run right after installation
 2023-04-20 18:39:49 -07:00
Daniel Ahlin
bf970ebf9d nccl-fastsocket: initial packaging for nccl-fastsocket (#36557) 
* nccl-fastsocket: Add NCCL transport plugin for GCP
* nccl-fastsocket: remove auto-gen. header and fix maintainers
* Update var/spack/repos/builtin/packages/nccl-fastsocket/package.py
* nccl-fastsocket: Add rationale for setting LD_LIBRARY_PATH

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2023-04-20 21:38:40 -04:00
MatthewLieber
af47b9170c osu-micro-benchmarks: adding sha for 7.1 release (#36702) 
* adding sha for 7.1 release
* add a new version

---------

Co-authored-by: Matt Lieber <lieber.31@osu.edu>
 2023-04-20 18:33:58 -07:00
Ashwin Kumar Karnad
bf04551bf5 Fix bigdft-suite compilation (#36612) 
(from d20f284100)
 2023-04-20 18:18:11 -07:00
Wouter Deconinck
a419ffcf50 osg-ca-certs: igtf link should point to version, not 'current' (#35977) 
* osg-ca-certs: igtf link should point to version, not 'current'
* osg-ca-certs: new version 1.110.igtf.1.119
* [@spackbot] updating style on behalf of wdconinc

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
 2023-04-20 18:09:27 -07:00
Cory Bloor
de7c82f13f hiprand: split into new package (#36798) 2023-04-20 17:48:54 -07:00
Adam J. Stewart
37fb2c8dce py-kornia: add v0.6.12 (#37074) 2023-04-20 20:48:35 -04:00
Alec Scott
329fa0f067 libxaw3d: add v1.6.4 (#36854) 2023-04-20 17:35:32 -07:00
snehring
9d97ed1190 bamutil: fix filter_file invocation (#36978) 2023-04-20 17:25:51 -07:00
snehring
794fc47722 gmap-gsnap: adding new version 2023-03-24 (#36983) 2023-04-20 17:12:30 -07:00
Erik Schnetter
5842e17085 netlib-lapack: New version 3.11.0 (#36984) 2023-04-20 17:10:47 -07:00
Annop Wongwathanarat
5ef7e90462 lammps: add linking with acfl for FFT (#37000) 2023-04-20 16:48:24 -07:00
Adam J. Stewart
05215e016b ML CI: fix mirror name (#37007) 2023-04-20 16:45:15 -07:00
Pieter Ghysels
1ddde85221 Upgrade to STRUMPACK v7.1.0, update minimum CMake version (#37014) 
* Upgrade to STRUMPACK v7.1.0, update minimum CMake version
* Update to v7.1.1, which has a fix for ROCm
 2023-04-20 16:42:36 -07:00
Glenn Johnson
da8be02e66 ants: add version 2.4.3 (#37031) 
* ants: add version 2.4.3
  - add version 2.4.3
  - deprecate old git version
* [@spackbot] updating style on behalf of glennpj

---------

Co-authored-by: glennpj <glennpj@users.noreply.github.com>
 2023-04-20 16:31:27 -07:00
Rémi Lacroix
c348776096 Add new package MozJPEG (#37052) 
* Add new package MozJPEG
  MozJPEG is a patched version of libjpeg-turbo which improves JPEG compression efficiency achieving higher visual quality and smaller file sizes at the same time.
* MozJPEG: Add myself as a maintainer and fix style
 2023-04-20 19:28:07 -04:00
Glenn Johnson
683b933f68 atompaw: add version 4.2.0.2 (#37035) 2023-04-20 16:07:33 -07:00
Alec Scott
5c5f3c00a3 emacs: default to +tls true (#37038) 
* emacs: default to +tls true
* Add myself as a maintainer for emacs pkg
 2023-04-20 15:53:11 -07:00
AMD Toolchain Support
d5c549f1e6 stream optimization for aocc (#37039) 2023-04-20 15:45:17 -07:00
Olivier Cessenat
8fb38e3982 poppler-data: new version 0.4.12 (#37042) 2023-04-20 15:35:51 -07:00
Olivier Cessenat
61ce48c2ac poppler: new version 23.04.0 (#37043) 2023-04-20 15:34:40 -07:00
Olivier Cessenat
af19e51966 gxsview: new version 2022.11.04 (#37050) 2023-04-20 15:32:02 -07:00
Olivier Cessenat
04aaaa8270 netpbm: new version 10.73.43 (#37051) 2023-04-20 15:31:03 -07:00
Adam J. Stewart
f174bca689 py-lightly: add v1.4.2 (#37053) 
* py-lightly: add v1.4.2
* pytorch and lightning 2.0 now supported
 2023-04-20 15:29:53 -07:00