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Author SHA1 Message Date
Geoffrey Oxberry
5ed6e6f184 pnmpi@1.7: new package (#7051) 
Add PnMPI, a dynamic MPI tool infrastructure that builds on top of the
PMPI interface.
 2018-03-06 18:48:28 +01:00
健美猫
c0f6cb5393 Add the libssh2 variant for curl. (#6980) 2018-03-06 18:41:22 +01:00
Eric
2be8712406 perl-net-scp-expect: Create new package (#7028) 2018-03-06 18:39:13 +01:00
Christoph Junghans
274036bfed gromacs: add v2018 (#7050) 2018-03-06 18:37:45 +01:00
Simon Flood
fa5911af83 Update package.py (#7327) 
Add versions released after 3.5.0 (3.4.3, 3.5.1, and 3.6.x)
 2018-03-06 18:28:02 +01:00
peetsv
d649fda48a py-crossmap: adding new package (#7108) 2018-03-06 18:27:03 +01:00
Sergey Kosukhin
8d6738a3e6 Setup dependent environment for pkgconf. (#7102) 2018-03-06 18:25:00 +01:00
Elizabeth Fischer
02bed55007 py-rasterio: Added with dependencies. (#7156) 2018-03-06 18:21:34 +01:00
Geoffrey Oxberry
45e78a42cf sosflow: add missing dependencies (#7182) 
SOSflow depends on MPI and pkg-config, but neither of these
dependencies are currently in the spack package, so this commit adds
them.
 2018-03-06 18:17:49 +01:00
Paschalis Korosoglou
ceb8963362 Add cmor version 3.3.0 (#7197) 2018-03-06 18:16:52 +01:00
Eric
d77a2eecbe perl-graph-readwrite: Create new package (#7284) 2018-03-06 18:12:06 +01:00
mcneish1
642484caeb Add sqlite 3.22.0 (#7335) 2018-03-06 18:09:09 +01:00
healther
b106c86fa3 Fix apr pick up of log4cxx (#7347) 2018-03-06 18:08:51 +01:00
Michael Kuhn
17772fcd43 likwid: Fix build (#7244) 
likwid uses the current directory when building the paths to its
internal libraries. Spack overwrites PWD, causing likwid to not find
hwloc.h.
 2018-03-06 18:07:37 +01:00
Veselin Dobrev
65a1655022 mumps: add the libs property (#7264) 2018-03-06 18:05:58 +01:00
Ricardo Silva
4a54178ff8 Make neuron package more generic (#7393) 
Make neuron package more generic

* find the bin directory dynamically for use in run_env and spack_env
* replace filter_compilers after install with filter_compiler_wrappers
* update checksum for _current_ 7.5 version
* make +python conflict with ~shared
* prepend the architecture specific lib directory to the LD_LIBRARY_PATH

Signed-off-by: Ricardo Silva <ricardo.silva@epfl.ch>
 2018-03-06 16:31:28 +01:00
Matthias Diener
8f350d0002 Colordiff: new package (#7070) 2018-03-06 13:14:29 +01:00
Eric
bcae9c3506 py-bitstring: Create new package (#7190) 2018-03-06 13:04:16 +01:00
Veselin Dobrev
7482cf1d9f suite-sparse: add a package-specific 'libs' property (#7269) 2018-03-06 10:09:20 +01:00
Yifan Zhu
9c828f3068 trnascan-se: new package (#7351) 2018-03-06 09:58:05 +01:00
Axel Huebl
c7a8c4a44c libSplash 1.7.0: Root Fix (#7368) 
Fix installs as "root" user for the last libSplash release.
Missing quoting of string compares resulted in a CMake error
when run as root (e.g. in a Docker build).
 2018-03-06 09:38:40 +01:00
lingnanyuan
7aff7cbaec snpEff: Create new package. (#7382) 2018-03-06 09:34:22 +01:00
Eric Müller
2f06292abc mosh build depends on pkg-config (#7365) 2018-03-06 09:34:00 +01:00
Eric
c2d1344c51 perl-file-slurper: Create new package (#7378) 2018-03-06 09:28:37 +01:00
Christoph Junghans
ca367b4de3 exasp2: add v1.0 (#7398) 2018-03-06 09:01:53 +01:00
Yifan Zhu
d90b03db09 braker: added list_url (#7058) 2018-03-06 08:51:43 +01:00
Massimiliano Culpo
94c22092a8 Save sources in a mirror and cache it in Travis (#7392) 2018-03-06 06:49:43 +01:00
Yifan Zhu
4a7e88cc71 r-sf: new package (#6547) 
* r-sf: new package

* r-sf: added version requirements for dependencies
 2018-03-05 23:45:19 -06:00
Christoph Junghans
96f9576426 minighost: another Ubuntu fix (#7359) 2018-03-05 17:39:21 -07:00
Christoph Junghans
94c8299a1e minismac2d: fix build with external Debian MPI (#7318) 2018-03-05 16:07:41 -07:00
Eric
35115127bc perl-extutils-depends: Create new package (#7376) 2018-03-05 21:32:22 +01:00
Federico Ficarelli
fa442ed61a rapidjson: new package (#7391) 2018-03-05 21:10:02 +01:00
Mario Melara
ccb24b1438 Fix pkgconf on Crays (#7171) 
This updates Cray.setup_platform_environment to use cray-specific
pkgconfig paths so that all providers of 'pkgconfig' have access
to them (previously the 'pkg-config' provider had this but the
'pkgconf' provider did not).
 2018-03-05 12:08:11 -08:00
Adam J. Stewart
89a591eb3b Fix version-specific URLs for Python packages (#7394) 2018-03-05 12:00:49 -08:00
Veselin Dobrev
e4597f09be openmpi: add package-specific 'headers' property (#7267) 
* [OpenMPI] Add the 'headers' property. This removes some redundant
headers from sub-directories, returned by the default '.headers'
handler.

* [OpenMPI] In the .headers property, add a fallback to search all of
prefix for the mpi.h header. Recommended by @junghans to support some
external configurations, see #7268.
 2018-03-05 12:53:36 -07:00
Federico Ficarelli
3cf2cda4ec tclap: new package (#7390) 2018-03-05 14:53:42 +01:00
scheibelp
8b0552bc23 only filter compiler paths for binaries provided by the compiler (#7369) 2018-03-05 14:43:43 +01:00
Eric
ca336b60fa bracken: Create new package (#7375) 2018-03-05 14:16:27 +01:00
Mike Pozulp
90c8243113 add -ldl to silo ldflags when building with static hdf5 in order to fix #7384 (#7385) 2018-03-05 13:28:37 +01:00
Cyrus Harrison
d59ee8d07d update for conduit 0.3.1 release (#7344) 2018-03-05 11:04:21 +01:00
Eric Müller
1a77884c07 fix ruby build on gcc >= 7 (#7387) 
* pkgconfig fixes a "libffi.a requires -fPIC" build error
* the patches solve the mentioned problem on GCC 7.x
 2018-03-05 10:01:23 +01:00
Axel Huebl
189d9ec138 Rsync package: Fix Src Link (#7367) 
Fix the source link to rsync downloads.

The old link only contained the latest release, the new link
contains all.
 2018-03-01 22:42:26 -08:00
junkudo
6213463aeb new package: hiop (#7039) 2018-03-01 15:26:28 -08:00
Eric
86afd0e851 new package: perl-parallel-forkmanager (#7049) 2018-03-01 12:37:16 -08:00
healther
1ac0bce3e9 help gdb pick up python3 (#7104) 
* Update gdb to autotools package
* Help gdb find python libraries for python 3
 2018-02-28 23:13:06 -08:00
Omri Mor
b4b01b82ac mpich@develop: needs git submodules (#7357) 2018-02-28 19:48:57 -06:00
Eric
da2d6cccd6 new package: py-goatools (#7328) 2018-02-28 17:41:22 -08:00
Veselin Dobrev
d3ed46e958 [spack/spec.py] raise a query failure error if a property query returns None (#7277) 
* [SPACK/spec.py] When a query through ForwardQueryToPackage returns
'None', treat that as query failure and raise RuntimeError with
suitable message. This overrides the current behavior to raise an
AttributeError which is now triggered only when no suitable query
property is found and there is no default handler.

* [spack/spec.py] Fix style.

* [SPACK/spec.py] In case of query failure, i.e. property returning
'None', raise AttributeError instead of RuntimeError in order to
pass the unit test. Also, small update in the logic distinguishing
query failure and lack of relevant property/attribute handling.
 2018-02-28 15:25:29 -07:00
Denis Davydov
98949bd79b change recurse into recursive in a few places (#7342) 2018-02-28 20:15:26 +01:00
Christoph Junghans
3089207ced minighost: fix build on Ubuntu (#7354) 
* minighost: fix build on Ubuntu

* minighost: append -lgfortran only for gcc
 2018-02-28 09:37:01 -08:00