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Author SHA1 Message Date
iarspider
8624bf65f9 Add new version of fontconfig (#14949) 2020-02-15 23:11:10 -06:00
iarspider
e833ef9cce Add extra version of freetype (#14950) 2020-02-15 23:10:42 -06:00
iarspider
1b95c33c82 Add extra version of gperf (#14951) 2020-02-15 23:10:21 -06:00
iarspider
978d960158 Add extra version of HepMC (#14952) 2020-02-15 23:09:58 -06:00
iarspider
df1e9317b8 Add extra version of highfive (#14953) 
* Add extra version of HepMC

* Add extra version of highfive

* Undo changes to hepmc
 2020-02-15 23:09:36 -06:00
iarspider
7f9cd886f3 Add extra version of imagemagick (#14954) 2020-02-15 23:09:06 -06:00
iarspider
7d96e496b2 Add extra version of jemalloc (#14955) 2020-02-15 23:08:37 -06:00
iarspider
e75b8c1230 Add extra version of json-c (#14956) 2020-02-15 23:08:13 -06:00
iarspider
41a2a5db2c Add extra version of libgit2 (#14957) 2020-02-15 23:07:38 -06:00
iarspider
8f877fdc65 Add extra version of libsodium (#14958) 2020-02-15 23:07:12 -06:00
iarspider
bab407a28a Add extra version of libsvm (#14959) 2020-02-15 23:06:48 -06:00
iarspider
8308d2d59d Add extra version of libxkbcommon (#14961) 2020-02-15 23:06:17 -06:00
iarspider
a6dc3fe40b Add extra version of nlohmann-json (#14962) 2020-02-15 23:05:54 -06:00
iarspider
12ec8e340f Add extra version of pcre (#14963) 2020-02-15 23:05:30 -06:00
iarspider
f547f2ce10 Add extra version of pixman (#14964) 2020-02-15 23:05:09 -06:00
iarspider
00de09268e Add extra version of py-absl-py (#14965) 2020-02-15 23:04:40 -06:00
iarspider
ee573540a0 Add extra version of py-asn1crypto (#14967) 2020-02-15 23:03:17 -06:00
iarspider
d7de6cf055 Add extra version of py-arrow (#14966) 2020-02-15 23:02:21 -06:00
iarspider
ad7c11c482 Add extra version of py-astroid (#14968) 2020-02-15 23:01:53 -06:00
iarspider
ff71844bf6 Add extra version of py-attrs (#14969) 2020-02-15 23:01:24 -06:00
Nichols A. Romero
98c4d15655 Flang - Support libomptarget offload to NVidia GPU (#15015) 
* Modify Flang NVidia GPU variant to make use of built-in CudaPackage

* Add OpenMP Offload patch if March 2019 compiler is selected.

* Flang parallel build has a race condition.

* llvm-flang now uses built-in CudaPackage.

* Add variant for different build releases.

* Fix OpenMP target offload for NVidia GPUs.

* Additional commong flags that are needed with comments.

* NVidia BC required for libomp target requires special treatment. Use clang built in previous step to re-compile libomptarget.
 2020-02-15 22:56:58 -06:00
iarspider
4f3287a9dc Add extra version of py-cython (#14974) 2020-02-15 22:52:36 -06:00
iarspider
45ee708596 Add extra version of py-coverage (#14976) 2020-02-15 22:48:10 -06:00
iarspider
959d9d2365 Add extra version of py-certifi (#14977) 2020-02-15 22:47:28 -06:00
iarspider
7c88bb937d Add extra version of py-backports-abc (#14978) 2020-02-15 22:47:05 -06:00
iarspider
c92201e6ab Add extra version of py-decorator (#14980) 2020-02-15 22:44:28 -06:00
iarspider
bcccf0d4e7 Add extra version of py-importlib-metadata (#14983) 2020-02-15 22:35:47 -06:00
iarspider
8313de5be0 Add extra version of py-ipaddress (#14984) 2020-02-15 22:35:23 -06:00
iarspider
4db0eb4917 Add extra version of py-ipykernel (#14985) 2020-02-15 22:33:04 -06:00
iarspider
8b5cc1e76f Add extra version of py-ipython (#14986) 2020-02-15 22:32:28 -06:00
iarspider
bff3a087ec Add extra version of py-jinja2 (#14989) 2020-02-15 22:27:53 -06:00
iarspider
bd24d53ceb Add extra version of py-jpype1; add numpy as optional (variant) dependency (#14991) 
* Add extra version of py-jpype1

* Add numpy as optional (variant) dependency
 2020-02-15 22:24:44 -06:00
iarspider
2c0bfd071f Add extra version of py-jupyter-client (#14996) 2020-02-15 22:21:48 -06:00
Glenn Johnson
e5e6791d97 package r-readbitmap Change jpeg dependency (#15004) 
This PR corrects the jpeg dependency in r-readbitmap to use the jpeg
virtual dependency.
 2020-02-15 21:50:54 -06:00
Justin S
4a7e4655ac mafft: add 7.453 (#15006) 2020-02-15 21:48:26 -06:00
Matthias Diener
3f5d889d2b cloc: add version 1.84 (#15012) 2020-02-15 21:34:11 -06:00
Keita Iwabuchi
b688bb549b Add a new package: Metall (#14903) 
* Add a new package: Metall

* Fix errors in metall/package.py

* Update var/spack/repos/builtin/packages/metall/package.py

Change to https style URL

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update in metall/package.py. Change Metall to depend on Boost always

* Update in metall/package.py. Change to install Boost with the default variants

* Update metall/package.py. Removed a comment

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-02-15 00:34:32 -06:00
Patrick Gartung
baafa7ec84 Buildcache creation/extraction use temp tarfile to preserve hardlinks during copy to/from prefix. (#15003) 
* Buildcache creation change the way prefix is copied to workdir.
* install_tree copies hardlinked files
* tarfile creates hardlinked files on extraction.
* create a temporary tarfile from prefix and extract it to workdir

* Use temp tarfile to move workdir to prefix to preserve hardlinks instead of copying
 2020-02-14 16:10:28 -06:00
Scott Wittenburg
3c28e72d2f cuda: add libxml2 as a dependency for newer versions (#14758) 2020-02-14 12:13:30 -06:00
Paul
e65aa7569e docs: fix typo in arch in build settings examples (#14998) 2020-02-14 19:06:10 +01:00
Matthias Wolf
978a3bb7ef py-whichcraft: new package (#14907) 
* py-whichcraft: new package

* address comment
 2020-02-14 08:00:58 -06:00
Massimiliano Culpo
8c05221bc6 spack compiler info: quick fix for failing command (#14928) 
fixes #14927
 2020-02-13 20:32:55 -06:00
Sajid Ali
c607288a7c fix env vars before install (#14575) 2020-02-13 20:16:34 -06:00
Brian Van Essen
d524abad20 Updated both cub and nccl versions. Fixed a bug in the cub download (#14852) 
url.
 2020-02-13 20:10:02 -06:00
Adam J. Stewart
e0dfc3ddbf Fix shell detection: zsh5 -> zsh (#14858) 2020-02-13 20:07:09 -06:00
Glenn Johnson
8beb42e749 New package: r-codex (#14869) 
This PR adds the r-codex package.

- new package: r-bsgenome-hsapiens-ucsc-hg19
 2020-02-13 20:00:39 -06:00
Kai Torben Ohlhus
4fa29ceb50 openblas: add variant +consistentFPCSR (#14876) 
Add the OpenBLAS variant `+consistentFPCSR`, by default `False`, which adds the compile definition `CONSISTENT_FPCSR=1` as documented in  OpenBLAS `Makefile.rule`.
 2020-02-13 19:59:34 -06:00
Dr. Christian Tacke
690ed2fe98 [rsync] Use popt and zlib (#14755) 
popt and zlib are available as spack packages.
So use them instead of building internal ones.
 2020-02-13 19:55:41 -06:00
Glenn Johnson
7996bc809a New package: r-exomedepth (#14884) 
This PR adds the r-exomedepth package and r-aod as a dependency.
 2020-02-13 19:52:43 -06:00
Glenn Johnson
580c8f5b7e New package: r-exomecopy (#14885) 2020-02-13 19:51:18 -06:00