Commit Graph

16396 Commits

Author SHA1 Message Date
G-Ragghianti
94d6d3951a
Removed unofficial MAGMA release and enabled MAGMA in e4s (#24400) 2021-06-18 17:28:35 +00:00
Simon Frasch
58272c9d57
spla: add version 1.5.0 and fix compilation with amdblis (#24374) 2021-06-18 09:55:29 -06:00
Themos Tsikas
1b51f09bf0
Checksum update for NAGCompiler download , Version 7.0 (Build 7048) (#24360) 2021-06-18 09:43:15 -06:00
Satish Balay
e3f4036212
petsc, petsc4py: add version 3.15.1 (#24397) 2021-06-18 08:49:37 -06:00
Erik Schnetter
eeacda3dce
double-conversion: New versions 3.1.5, 2.0.2 (#24385)
A version 2.0.3 is also advertised, but doesn't download.
2021-06-18 08:34:38 -06:00
Glenn Johnson
c6961ba4d3
Fixes for opencv (#24361)
This PR fixes a couple of issues with the opencv package, mostly in
relation to cuda. This is only focused on cuda, not any of the other
variants.
- Added versions to the contrib_vers list. Added for all that can be
  retrieved from github. The one for the latest version was missing.
- Added a cmake patch for v3.2.0.
- Deprecated versions 3.1.0 and 3.2.0 as neither of those could be
  built, with or without cuda.
- Adjusted constraints on applying initial cmake patch.
- Added cudnn dependency when +cuda.
- Set constraints for cudnn and cuda for older versions of opencv.
2021-06-18 16:15:58 +02:00
Adam J. Stewart
8ad05d6a74
FBGEMM: GCC 5+ and AVX2 required (#24356) 2021-06-18 08:49:18 -05:00
Glenn Johnson
9750459e05
gsl package: update patch for later version (#22968)
Old patch is still provided for older versions.
2021-06-17 17:37:57 -07:00
Erik Schnetter
fa89ca2eb0
vtk: Limit freetype versions (#24389)
freetype 2.0.3 introduces an incompatible change

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-06-17 15:13:33 -06:00
Adam J. Stewart
1c22742eed
gloo: add +cuda variant (#24390) 2021-06-17 20:32:38 +00:00
Erik Schnetter
d4b5911671
hwloc: New version 2.5.0 (#24387) 2021-06-17 13:16:28 -06:00
Erik Schnetter
47e9b62b43
freetype: Add version 2.0.2 (#24386) 2021-06-17 12:37:31 -06:00
Adam J. Stewart
54d8fea9fc
MAGMA: add v2.6.0, sm_37 support (#24383) 2021-06-17 11:10:39 -06:00
Adam J. Stewart
3eee93ee76
ONNX: add new package (#24384) 2021-06-17 11:07:35 -06:00
Nick Forrington
b5cb75e5ec
arm-forge: add v21.0.2 and variant to detect PMU counters (#24298) 2021-06-17 05:55:32 -06:00
Harmen Stoppels
75675de02a
Fix an issue where cray module files may not have CRAY_MPICH_DIR set (#24267) 2021-06-17 04:28:25 -06:00
Tom Payerle
b8ad621907
vtk: patch to replace use of FT_CALLBACK_DEF (#24238) 2021-06-17 04:19:23 -06:00
Andreas Baumbach
eac757da8c
New package: py-pyusb (#23733)
* New package: py-pyusb

Change-Id: I606127858b961b5841c60befc5a8353df0f9f38c

* fixup dependencies

Change-Id: I0c9b0ccee693d2c4e847717950d4ce64cb319794

* fixup 2

Change-Id: Ibaccbdafd865e363564f491054e4e4ceb778727b

* Update var/spack/repos/builtin/packages/py-pyusb/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-06-17 03:58:21 -06:00
Harmen Stoppels
011a940f44
Break llvm-amdgpu circular dependency with rocm-device-libs (#23859) 2021-06-17 03:52:33 -06:00
Anton Kozhevnikov
85c5589620
add -fallow-argument-mismatch flag for gcc10 (#24354) 2021-06-17 03:40:27 -06:00
Jen Herting
986776c937
New package: py-pyscreeze (#24251)
* [py-pyscreeze] created template

* [py-pyscreeze] added dependencies

* [py-pyscreeze] depends on scrot

* [py-pyscreeze] Final cleanup

- added homepage
- added description
- removed fixmes

* [py-pyscreeze] using pil provider
2021-06-17 03:31:33 -06:00
Howard Pritchard
2739edd42c
open mpi: add v4.0.6 and fix a bug (#24344)
A patch no longer applies cleanly as its fixed in v4.0.6 - fix it here

==> Installing openmpi-4.0.6-in47f6rxspbnyibkdx6x4ekg6piujobd
==> No binary for openmpi-4.0.6-in47f6rxspbnyibkdx6x4ekg6piujobd found: installing from source
==> Fetching https://download.open-mpi.org/release/open-mpi/v4.0/openmpi-4.0.6.tar.bz2
Reversed (or previously applied) patch detected!  Assume -R? [n]
Apply anyway? [n]
2 out of 2 hunks ignored -- saving rejects to file opal/include/opal/sys/gcc_builtin/atomic.h.rej

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2021-06-17 03:28:37 -06:00
Manuela Kuhn
3571c1b812
nss: add nssutil3 library to pkg-config (#24364)
This is needed for qt+webkit to build correctly.
As reference the debian package was taken:
https://salsa.debian.org/mozilla-team/nss/-/blob/master/debian/nss.pc.in
2021-06-17 03:19:31 -06:00
snehring
7831d6be75
bowtie2: add constraints for the simde dependency (#24226) 2021-06-17 01:52:27 -06:00
Asher Mancinelli
c8f58c5f1d
hiop: add v0.4.4, use commits for tags (#24365) 2021-06-17 08:53:31 +02:00
Adam J. Stewart
56f1904538
NNPACK: add new package (#24333) 2021-06-17 00:01:24 -06:00
Adam J. Stewart
10608edd24
py-peachpy: add new package (#24373) 2021-06-16 23:34:18 -06:00
Adam J. Stewart
3adee93d14
py-opcodes: add new package (#24372) 2021-06-17 07:04:38 +02:00
John Jolly
d31d339bf6
z3: update package to use CMake build system (#24337)
The Z3 solver provides a Z3Config.cmake file when built using the CMake build
system. This submission changes the package build system to inherit the
CMakePackage type. In addition to changing the build system, this submission:

- Adds the GMP variant
- Removes v4.4.0 and v4.4.1 as CMake was implemented starting with v4.5.0
2021-06-17 07:03:37 +02:00
Adam J. Stewart
5692c15e3a
TensorPipe: add new package (#24335)
* TensorPipe: add new package

* Add libuv dependency

* Add min supported version of libuv
2021-06-16 16:36:48 -05:00
Adam J. Stewart
f0a85059c2
XNNPACK: add new package (#24334)
* XNNPACK: add new package

* XNNPACK: add resources
2021-06-16 16:35:56 -05:00
Adam J. Stewart
551ae264fe
gloo: add py-torch submodule commits (#24330)
* gloo: add py-torch submodule commits

* gloo: add new version

* gloo: add master branch

* gloo: use Ninja generator
2021-06-16 10:06:40 -05:00
OliverPerks
a92bed0dc5
openssl: architecture check is now based on spec target (#24228) 2021-06-16 08:10:43 -06:00
Nicolas Cornu
3f9f2c2abe
eigen: fix build with nvhpc (#24253) 2021-06-16 07:58:31 -06:00
Adam J. Stewart
72c6fc2fda
kineto: add new package (#24319) 2021-06-16 07:43:47 -06:00
Adam J. Stewart
38088dd898
FBGEMM: add new package (#24318) 2021-06-16 07:37:44 -06:00
Tim Haines
4f40454800
Dyninst: add v11.0.1 (#24322) 2021-06-16 07:34:39 -06:00
Glenn Johnson
46214b0caa
Set r-chipseq to bioconductor format (#24315)
- added description
- converted to git from url
- set commit rather than sha256
2021-06-16 15:18:13 +02:00
Adam J. Stewart
ce0eb4862f
QNNPACK: add py-torch submodule commits (#24329) 2021-06-16 14:57:37 +02:00
Steven Smith
058ae3f0fd
ParFlow: add new package (#24331) 2021-06-16 14:56:36 +02:00
Glenn Johnson
2439b8d59c
r-effects: new package (#24342) 2021-06-16 03:11:16 -06:00
archxlith
891207f20e
kaldi: fix building with mkl (#24338) 2021-06-16 03:10:39 -06:00
archxlith
5ec708cb48
openfst: add v1.7.3 (#24339)
It's the highest version allowed in kaldi package
2021-06-16 03:07:17 -06:00
snehring
822d6a93fb
openmolcas: add v21.02, add mpi variant (#24343) 2021-06-16 10:37:36 +02:00
Adam J. Stewart
64f3e37479
cpuinfo: prevent downloads during build (#24345) 2021-06-16 08:28:25 +02:00
Adam J. Stewart
8a938978a4
pthreadpool: more specific resource destination (#24346) 2021-06-16 08:27:20 +02:00
Marc Fehling
a067b48112
p4est: add v2.3.2 (#24311) 2021-06-15 23:46:19 -06:00
Axel Huebl
ca1d1c427c
openPMD-api: Build with Legacy API (#24341)
Allow to build with `^hdf5@1.12.0 api=v110` and `v18`.
2021-06-15 18:37:52 -07:00
Richarda Butler
1c44912f9b
add irep and lua-lang virtual dependency (#22492)
This adds a package for `irep`, a tool for reading `lua` input decks from 
Fortran, C, and C++.

`irep` can be built with either `lua` or `luajit`.  To address this, we also add
a virtual package for lua called `lua-lang`.  `luajit` isn't, by default, a drop-in
replacement for `lua`, but we add a `+lualinks` variant to it that adds symlinks
that make it behave like `lua@5.1`.  With this variant enabled, it provides the
`lua-lang` virtual.  `lua` always provides `lua-lang`.

- [x] add `irep` package
- [x] add `+lualinks` variant to `lua-luajit`
- [x] create `lua-lang` virtual, provided by `lua` and `luajit+lualinks`

Co-authored-by: Kayla Richarda Butler <butler59@quartz1148.llnl.gov>
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2021-06-15 17:50:04 -07:00
Seth R. Johnson
5971372be7
cairo: fix gtkdocize patch (#24332)
Patch in #23971 was not correct
2021-06-15 16:08:56 -07:00
Adam J. Stewart
cdc28a9623
pthreadpool: add new package (#24324) 2021-06-15 14:58:37 -06:00
Thomas Madlener
d4e04f9410
dd4hep: add v1.17 and a patch for cmake issues (#24274) 2021-06-15 13:52:34 -06:00
Seth R. Johnson
1bf84d170f
libdrm: fix one error, mark another conflict (#24309)
* libdrm: fix one configure error and require libpciaccess

Failure with `LIBS`: the linker can't find `-lrt` so configure fails on
darwin-bigsur %apple-clang@12.0.5
```
  >> 22    configure: error: in `/private/var/folders/gy/mrg1ffts2h945qj9k29s1l1dvvmbqb/T/s3j/spack-s
           tage/spack-stage-libdrm-2.4.100-ofhk6m25n2pi427ihnxmvjkfmgyzlrqc/spack-src':
  >> 23    configure: error: C compiler cannot create executables
     24    See `config.log' for more details

See build log for details:
  /var/folders/gy/mrg1ffts2h945qj9k29s1l1dvvmbqb/T/s3j/spack-stage/spack-stage-libdrm-2.4.100-ofhk6m25n2pi427ihnxmvjkfmgyzlrqc/spack-build-out.txt
```

* libpciaccess: Mark conflict with darwin

```
make[2]: *** [common_init.lo] Error 1
make[2]: *** Waiting for unfinished jobs....
common_interface.c:75:10: fatal error: 'sys/endian.h' file not found
         ^~~~~~~~~~~~~~
```
and
```
common_init.c:73:3: error: "Unsupported OS"
```
and others
2021-06-15 12:13:28 -06:00
Glenn Johnson
d7263b5da0
r-insight: new package (#24313) 2021-06-15 11:16:34 -06:00
Paul Romano
ba65cc73ef
openmc: add v0.12.2, v0.12.1 (#24320) 2021-06-15 09:19:39 -06:00
eugeneswalker
c302887f9b
openpmd-api: conflicts w hdf5 api=v110, v16, v18 (#24323)
* openpmd-api: conflicts w hdf5 api=v110, v16, v18
* Update var/spack/repos/builtin/packages/openpmd-api/package.py
* Add reference

Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2021-06-15 07:01:21 -06:00
Hervé Yviquel
b92abd79ab
paraver: rename package to wxparaver, add new versions and fix installation (#24307)
* update url, add all new versions and fix installation

* add wxparaver package and set the old paraver package as deprecated

* remove update of deprecated package

* remove old version from new wxparaver

* Update url

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-06-14 17:46:12 -06:00
David M. Rogers
26c645650d
Made mxnet's cuda dependency conditional on +cuda. (#24305) 2021-06-14 15:23:09 -05:00
Emil Briggs
8793d93e8c
New package: rmgdft. (#23313) 2021-06-14 13:40:22 -06:00
QuellynSnead
34c9c89b55
Caliper: add v2.6.0 (#24303) 2021-06-14 13:04:14 -06:00
Robert Cohn
d993ee7972
oneAPI packages: fix install for python2 (#24296)
Fix platform detection logic to work for Python 2 and 3
2021-06-14 10:47:44 -07:00
Axel Huebl
22fe56ad24
HiPACE: new package (#24070)
Co-authored-by: Severin Diederichs <65728274+SeverinDiederichs@users.noreply.github.com>
2021-06-14 19:34:24 +02:00
Glenn Johnson
9cfcc16084
leptonica: add v1.81.0 and missing dependencies (#24302)
- add version 1.81.0
- add dependencies
  - giflib
  - jpeg
  - libpng
  - libtiff
  - libwebp
  - openjpeg
- build shared libs
2021-06-14 11:25:33 -06:00
Glenn Johnson
dcabbca1c5
libwebp: add v1.2.0 and new variants (#24301)
- add version 1.2.0
- add variants
    - giflib
    - jpeg
    - libpng
    - libtiff
2021-06-14 19:04:21 +02:00
Sergio
25bca688ce
Fix the branch for the develop version of IOR (#24079) 2021-06-14 10:46:13 -06:00
eugeneswalker
0b769855a1
fast-global-file-status: depends_on libtool (#24293) 2021-06-14 10:01:29 -06:00
Jen Herting
0d73fd2b11
gnutls: added unconditional dependency on libidn2 (#21471) 2021-06-12 13:44:51 +02:00
Michael Kuhn
1b71d22194
nss: new package (#24288) 2021-06-12 03:19:13 -06:00
Olivier Cessenat
d6cbf72b19
graphviz: add v2.47.2 (#24273)
Updated dependencies
2021-06-12 09:37:00 +02:00
Vanessasaurus
ae91d49f21
libinih: add new package (#24289)
xfsprogs currently does not install with error message:
FATAL ERROR: could not find a valid ini.h header.
Adding this package libinih, and including it as
a dependency for xfsprogs seems to fix the issue. It could be
that we only need to add it for newer versions (if it worked before)
and maybe a maintainer can comment on that.

Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2021-06-12 00:31:29 -06:00
Adam J. Stewart
8a0a60c575
py-pytorch-sphinx-theme: add new package (#24283) 2021-06-12 08:15:55 +02:00
Michael Kuhn
163fe86bda
nspr: add v4.31 (#24284) 2021-06-12 08:08:01 +02:00
Seth R. Johnson
8b75e81666
llvm: add conflicts for newer gcc (#24281)
Closes #24270
2021-06-11 17:07:14 -06:00
Robert Mijakovic
177750b215
cp2k: add v8.2 (#24265)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-06-11 15:43:14 -06:00
Adrien Bernede
b0f348315c
ipopt: add versions up to v3.13.0 (#16706)
Pagination on Github prevent spack from easily parse all available
versions. Also, due to recent migration to GitHub, tarballs for
versions up to 3.12.13 have be regenerated, changing the hash.

The current URL will apparently be supported, so we keep it, and give
the alternative one as a comment.
2021-06-11 14:36:50 -06:00
Tom Payerle
4a8785d371
[py-ippython]: Start py-backcall dependency to start at py-ipython@7.3.0: (#24279)
This should fix #24278
$INSTALLDIR/lib/python3.7/site-packages/IPython/core/events.py contains an
import from backcall even in @7.3.0, so dependency on py-backcall needs
to start earlier.
2021-06-11 19:11:44 +00:00
Manuela Kuhn
adc4699c3a
qt+webkit: fix python2 dependency and add opengl conflict (#24276) 2021-06-11 17:24:28 +00:00
Andreas Baumbach
44a8e17549
py-distributed: restrict py-contextvars dep to newer versions (#23841)
* py-distributed: restrict py-contextvars dep to newer versions

Change-Id: I8a6d55b840309aa6966ab310d42252f45b0ef9c7

* fixup dependency on py-contextvars

Change-Id: I56b729394af0f5a6fc283344d8af87990c97426b
2021-06-11 10:15:55 -05:00
Tom Payerle
b4bf0c3476
texlive: restrict poppler version (#24222)
Restrict poppler version for texlive to poppler@:0.84
Should fix #19946

See also https://github.com/NixOS/nixpkgs/issues/79170
Looks like poppler@0.84 upgraded their header files to use the C++ cstdio
instead of the C stdio.h.  Since TeX is using C, not C++. this causes problems.
2021-06-11 09:01:24 -06:00
William Downs
a588d5dc58
gchp: add v13.0.2 and dev branch (#24206) 2021-06-11 07:22:21 -06:00
ajaust
31c4cdf59c
py-pyprecice: fix checksums of 2.2.0.1 and 2.2.1.1 (#24264) 2021-06-11 04:34:43 -06:00
Olivier Cessenat
98ee702b37
perl-cgi: add v4.53 (#24266) 2021-06-11 03:58:39 -06:00
Jen Herting
dbdf8f2ce7
scrot: new package (#24250) 2021-06-11 09:03:44 +00:00
Olivier Cessenat
dcb3fbf98e
visit-cgns: better sets VISIT_PLUGIN_DIR to fit VisIt dir struct (#23834) 2021-06-11 10:28:57 +02:00
Olivier Cessenat
202510869d
visit-silo: better sets VISIT_PLUGIN_DIR to fit VisIt dir struct (#23833) 2021-06-11 10:28:31 +02:00
Rémi Lacroix
ed695f3267
iq-tree: add v2.1.3 (#24235) 2021-06-11 02:19:27 -06:00
Hervé Yviquel
a83b75b878
extrae: fix import and issue with pthread (#24220) 2021-06-11 10:12:18 +02:00
Mark W. Krentel
eefcd3d00d
hpcviewer: add v2021.05 (#24225) 2021-06-11 10:11:06 +02:00
Rémi Lacroix
722376c201
mafft: add v7.481 (#24233) 2021-06-11 09:58:43 +02:00
Jen Herting
269615b9ca
tophat: set the C++ standard (#21737) 2021-06-11 09:54:18 +02:00
Nikolay Petrov
ec2d8a1571
Fixing provides directive for intel-oneapi-onedal package (#24108) 2021-06-11 09:47:27 +02:00
Jen Herting
c630594092
giblib: new package (#24249) 2021-06-11 09:43:39 +02:00
Marc Fehling
e291fa1b1a
p4est: use the official tarball release. (#24219) 2021-06-11 06:46:21 +00:00
Adam J. Stewart
8c7f94db1c
py-fiscalyear: add v0.3.2 (#24262) 2021-06-11 08:27:16 +02:00
Michael Kuhn
f7391c1970
iwyu: add 0.16 (#24258) 2021-06-10 19:28:26 -04:00
Carson Woods
5926056f3a
reframe: add v3.6.1, v3.6.2 (#24239) 2021-06-10 13:01:44 -06:00
Jen Herting
1c81438343
New package: py-python-xlib (#24150)
* [py-python-xlib] created template

* [py-python-xlib] added dependencies

* [py-python-xlib] Final cleanup

- added homepage
- added description
- removed fixmes

* [py-python-xlib] allowed newer versions of python
2021-06-10 12:58:21 -06:00
Peter Lindstrom
31bca57e89
zfp package: ensure openmp variant is processed (#24221)
* zfp: several package improvements

- add variants for build targets, language bindings, backends
- ensure selected variants are compatible with zfp version
- point to GitHub (not LLNL) tar balls
- add dependencies
- update link to homepage
- add maintainers

* zfp: address suggestions by Spack team

- use conflicts() instead of raising exceptions
- use define() and define_from_variant() where applicable

* Apply suggestions from code review

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>

* Fix ZFP OpenMP build.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-06-10 10:25:46 -07:00
Jen Herting
9da1cb615f
New package: py-keyboard (#23636)
* [py-keyboard] created template

* [py-keyboard]

- updated homepage
- added dependency for OSX
- added description
- removed fixmes

* [py-keyboard] Until py-pyobjc can be created, specifying conflict with platform=darwin

* [py-keyboard] is verb
2021-06-10 16:26:44 +00:00
Olivier Cessenat
e4a79dab47
groff: add v1.22.4, update recipe (#24213)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-06-10 16:58:22 +02:00