* libdrm: fix one configure error and require libpciaccess
Failure with `LIBS`: the linker can't find `-lrt` so configure fails on
darwin-bigsur %apple-clang@12.0.5
```
>> 22 configure: error: in `/private/var/folders/gy/mrg1ffts2h945qj9k29s1l1dvvmbqb/T/s3j/spack-s
tage/spack-stage-libdrm-2.4.100-ofhk6m25n2pi427ihnxmvjkfmgyzlrqc/spack-src':
>> 23 configure: error: C compiler cannot create executables
24 See `config.log' for more details
See build log for details:
/var/folders/gy/mrg1ffts2h945qj9k29s1l1dvvmbqb/T/s3j/spack-stage/spack-stage-libdrm-2.4.100-ofhk6m25n2pi427ihnxmvjkfmgyzlrqc/spack-build-out.txt
```
* libpciaccess: Mark conflict with darwin
```
make[2]: *** [common_init.lo] Error 1
make[2]: *** Waiting for unfinished jobs....
common_interface.c:75:10: fatal error: 'sys/endian.h' file not found
^~~~~~~~~~~~~~
```
and
```
common_init.c:73:3: error: "Unsupported OS"
```
and others
* update url, add all new versions and fix installation
* add wxparaver package and set the old paraver package as deprecated
* remove update of deprecated package
* remove old version from new wxparaver
* Update url
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
xfsprogs currently does not install with error message:
FATAL ERROR: could not find a valid ini.h header.
Adding this package libinih, and including it as
a dependency for xfsprogs seems to fix the issue. It could be
that we only need to add it for newer versions (if it worked before)
and maybe a maintainer can comment on that.
Signed-off-by: vsoch <vsoch@users.noreply.github.com>
Co-authored-by: vsoch <vsoch@users.noreply.github.com>
Pagination on Github prevent spack from easily parse all available
versions. Also, due to recent migration to GitHub, tarballs for
versions up to 3.12.13 have be regenerated, changing the hash.
The current URL will apparently be supported, so we keep it, and give
the alternative one as a comment.
This should fix#24278
$INSTALLDIR/lib/python3.7/site-packages/IPython/core/events.py contains an
import from backcall even in @7.3.0, so dependency on py-backcall needs
to start earlier.
Restrict poppler version for texlive to poppler@:0.84
Should fix#19946
See also https://github.com/NixOS/nixpkgs/issues/79170
Looks like poppler@0.84 upgraded their header files to use the C++ cstdio
instead of the C stdio.h. Since TeX is using C, not C++. this causes problems.
* zfp: several package improvements
- add variants for build targets, language bindings, backends
- ensure selected variants are compatible with zfp version
- point to GitHub (not LLNL) tar balls
- add dependencies
- update link to homepage
- add maintainers
* zfp: address suggestions by Spack team
- use conflicts() instead of raising exceptions
- use define() and define_from_variant() where applicable
* Apply suggestions from code review
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
* Fix ZFP OpenMP build.
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
* [py-keyboard] created template
* [py-keyboard]
- updated homepage
- added dependency for OSX
- added description
- removed fixmes
* [py-keyboard] Until py-pyobjc can be created, specifying conflict with platform=darwin
* [py-keyboard] is verb
* Update of Flecsi Spackage
Update of flecsi spackage to reconcile differences between flecsi@1:1.9
and flecsi@2: for future support purposes
* Removing Unnecessary Conditional
Removing unused conditional. Initially the plan was to switch based on
version in `cmake_args` but this was not necessary as build system
variable names remained mostly the same and conflicts prevent the rest.
For the most part, if a variant is there it does not need to check
against what version of the code is being built.
* Updated CI To Reconcile Flecsi Changes
Updated CI to target flecsi@1.4.2 which best matches the previous
release version and reconciled change in variant name
The common.inc script in TBB uses the environ var 'OS' to determine
the platform it's on. On Linux, this is normally empty and TBB falls
back to uname. But some systems set this to 'CentOS Linux 8' which is
descriptive, but not exactly what common.inc is looking for.
Instead, take the value from python and explicitly set OS to what TBB
expects to avoid this problem.
Since the two packages share a common history, the installation
procedure has been factored into a common base class.
Signed-off-by: vsoch <vsoch@users.noreply.github.com>
* Tcl: fix TCLLIBPATH
* Fix TCL|TK|TIX_LIBRARY paths
* Fix TCL_LIBRARY, no tcl8.6 subdir
* Don't rely on os.listdirs sorting
For tcl and tk, we also install the source directory, so there are
two init.tcl and tk.tcl locations. We want the one in lib/lib64,
which should come before the one in share.
* Add more patches
* Fix dylib on macOS
* Tk: add smoke tests
* Tix: add smoke test
Minimizing compiler mismatches in the DAG and preferring newer
versions of packages are now higher priority than trying to use as
many default values as possible in multi-valued variants.
According to the docs, r is needed for plotting, but plotting is
untested. In addition, the specific version requirement of java for gatk
could lead to multiple installations of r being triggered in an
environment. That might cause people to have to be deliberate about
java in a deployment. All in all, it seems that r is better as a
variant for gatk.
* Set job_id for SGE in darshan-runtime package
* Use a multi value variant for scheduler
Only one scheduler can be selected so make the variant multi valued and
set multi=False.
* hdf-eos5: Fix issue when linking against hdf5+szip (#23411)
Should fix issue #23411 when linking against hdf5+szip
Also fix bug if hdf5 does not depend on zlib
Reluctantly added payerle as a maintainer
Added version 1.1.13
Fixed versions for dependencies based on README.md for package
In particular:
* versions 1.1.x require python@3, at least 3.4 and for 1.1.13 at least 3.6
* py-osqp had been pinned to version 0.4.1, but README.md either shows
no version restriction, of 0.4.1 and higher
* @1.1.13 requires at least 1.1.6 of py-scs
* I am assuming since 1.1.x is python@3 only, py-six no longer required
(it was not explicitly showing up in README.md for these versions)
* add versions 2.2.0.2 and 2.2.1.1
* Add maintainer
Added Ishaan as additional maintainer as he is also maintainer of the Python bindings
* add new major precice version as dependency
* New Package:py-haphpipe@1.0.3
* removed llvm restrict. & changed freebayes
* Style fix
* Removed pip, wheel, added url for deps list
* used proper gsutil naming
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* url src for deps, samtools fix
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* petsc: add hip variant
* libceed: add 0.8, disable occa by default, and let autodetect AVX
Disabling OCCA because backend updates did not make this release and
there are some known bugs so most users won't have reason to use OCCA.
https://github.com/CEED/libCEED/pull/688
* WIP: ceed: 4.0 release
* MFEM package updates (#19748)
* MFEM package updates
* mfem: flake8
* [mfem] Various fixes and tweaks.
[arpack-ng] Add a patch to fix building with IBM XL Fortran.
[libceed] Fix building with IBM XL C/C++.
[pumi] Add C++11 flag for version 2.2.3.
* [mfem] Fix the shared CUDA build.
Reported by: @MPhysXDev
* [mfem] Fix a TODO item
* [mfem] Tweak the AmgX dependencies
* [suite-sparse] Fix the version of the mpfr dependency
* MFEM: add initial HIP support using the ROCmPackage.
* MFEM: add 'slepc' variant.
* MFEM: update the patch for v4.2 for SLEPc.
* mfem: apply 'mfem-4.2-slepc.patch' just to v4.2.
* ceed: apply 'spack style'
* [mfem] Add a patch for mfem v4.2 to work with petsc v3.15.0.
[laghos] Add laghos version 3.1 based on the latest commit in
the repository; this version works with mfem v4.2.
[ceed] For ceed v4.0 use laghos v3.1.
* [libceed] Explicitly set 'CC_VENDOR=icc' when using 'intel'
compiler.
* [mfem] Allow pumi >= 2.2.3 with mfem >= 4.2.0.
[ceed] Use pumi v2.2.5 with ceed v4.0.0.
* [ceed] Explicitly use occa v1.1.0 with ceed v4.0.0.
Use mfem@4.2.0+rocm with ceed@4.0.0+mfem+hip.
* [ceed] Add NekRS v21 as a dependency for ceed v4.0.0.
* [ceed] Fix NekRS version: 21 --> 21.0
* [ceed] Propagate +cuda variant to petsc for ceed v4.0.
* [mfem] Propagate '+rocm' variant to some other packages.
* [ceed] Use +rocm variant of nekrs instead of +hip.
* [ceed] Do not enable magma with ceed@4.0.0+hip.
* [libceed] Fix hip build with libceed@0.8.
* [laghos] For v3.1, use the release .tar.gz file instead of commit.
* Remove cuda & hip variants as they are inherited
* [ceed] Remove comments and FIXMEs about 'magma+hip'.
* [ceed] [libceed] Remove TODOs about occa + hip.
* libceed: use ROCmPackage and +rocm
* petsc: use ROCmPackage for HIP
* libceed, petsc: use CudaPackage
* ceed: forward cuda_arch and amdgpu_target
* [mfem] Use Spack's CudaPackage as a base class; as a result,
'cuda_arch' values should not include the 'sm_' prefix.
Also, propagate 'cuda_arch' and 'amdgpu_target' variants
to enabled dependencies.
* petsc: variant is +rocm, package name is hip
Co-authored-by: Jed Brown <jed@jedbrown.org>
Co-authored-by: Thilina Rathnayake <thilinarmtb@gmail.com>
