Commit Graph

1157 Commits

Author SHA1 Message Date
Massimiliano Culpo
14bc900e9d
spack.concretize: add type-hints, remove kwargs (#47382)
Also remove find_spec, which was used by the old concretizer.
Currently, it seems to be used only in tests.
2024-11-05 07:46:49 +01:00
Harmen Stoppels
8d0856d1cc
packaging_guide.rst: explain forward and backward compat before the less common cases (#47402)
The idea is to go from most to least used: backward compat -> forward compat -> pinning on major or major.minor version -> pinning specific, concrete versions.

Further, the following

```python
   # backward compatibility with Python
   depends_on("python@3.8:")
   depends_on("python@3.9:", when="@1.2:")
   depends_on("python@3.10:", when="@1.4:")

   # forward compatibility with Python
   depends_on("python@:3.12", when="@:1.10")
   depends_on("python@:3.13", when="@:1.12")
   depends_on("python@:3.14")
```

is better than disjoint when ranges causing repetition of the rules on dependencies, and requiring frequent editing of existing lines after new releases are done:

```python
   depends_on("python@3.8:3.12", when="@:1.1")
   depends_on("python@3.9:3.12", when="@1.2:1.3")
   depends_on("python@3.10:3.12", when="@1.4:1.10")
   depends_on("python@3.10:3.13", when="@1.11:1.12")
   depends_on("python@3.10:3.14", when="@1.13:")
2024-11-04 13:52:05 +01:00
dependabot[bot]
19e3ab83cf
build(deps): bump python-levenshtein in /lib/spack/docs (#47372)
Bumps [python-levenshtein](https://github.com/rapidfuzz/python-Levenshtein) from 0.26.0 to 0.26.1.
- [Release notes](https://github.com/rapidfuzz/python-Levenshtein/releases)
- [Changelog](https://github.com/rapidfuzz/python-Levenshtein/blob/main/HISTORY.md)
- [Commits](https://github.com/rapidfuzz/python-Levenshtein/compare/v0.26.0...v0.26.1)

---
updated-dependencies:
- dependency-name: python-levenshtein
  dependency-type: direct:production
  update-type: version-update:semver-patch
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2024-11-01 23:55:18 +00:00
dependabot[bot]
5df7dc88fc
build(deps): bump docutils from 0.20.1 to 0.21.2 in /lib/spack/docs (#45592)
Bumps [docutils](https://docutils.sourceforge.io) from 0.20.1 to 0.21.2.

---
updated-dependencies:
- dependency-name: docutils
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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2024-11-01 06:23:10 -05:00
Adam J. Stewart
6ab92b119d
Docs: remove reference to pyspack (#47346) 2024-10-31 11:15:51 +01:00
Harmen Stoppels
c3435b4e7d
hooks: run in clear, fixed order (#47329)
Currently the order in which hooks are run is arbitrary.

This can be fixed by sorted(list_modules(...)) but I think it is much
more clear to just have a static list.

Hooks are not extensible other than modifying Spack code, which
means it's unlikely people maintain custom hooks since they'd have
to fork Spack. And if they fork Spack, they might as well add an entry
to the list when they're continuously rebasing.
2024-10-30 18:57:49 +00:00
Alex Hedges
34b2f28a5e
Fix malformed RST link in documentation (#47309) 2024-10-30 09:40:35 +01:00
Jordan Galby
f13d998d21
Add spack short version in config variables (#47016) 2024-10-25 07:34:59 +02:00
Scott Wittenburg
1472dcace4
ci: Remove deprecated logic from the ci module (#47062)
ci: Remove deprecated logic from the ci module

Remove the following from the ci module, schema, and tests:

- deprecated ci stack and handling of old ci config
- deprecated mirror handling logic
- support for artifacts buildcache
- support for temporary storage url
2024-10-23 12:50:55 -06:00
dependabot[bot]
e785d3716e
build(deps): bump sphinx from 7.4.7 to 8.1.3 in /lib/spack/docs (#47159)
Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 7.4.7 to 8.1.3.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/v8.1.3/CHANGES.rst)
- [Commits](https://github.com/sphinx-doc/sphinx/compare/v7.4.7...v8.1.3)

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updated-dependencies:
- dependency-name: sphinx
  dependency-type: direct:production
  update-type: version-update:semver-major
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2024-10-23 06:18:20 -06:00
dependabot[bot]
50aa5a7b24
build(deps): bump black from 24.8.0 to 24.10.0 in /lib/spack/docs (#47118)
Bumps [black](https://github.com/psf/black) from 24.8.0 to 24.10.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/24.8.0...24.10.0)

---
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- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
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2024-10-22 18:58:31 +02:00
Jordan Galby
e5a602c1bb
Modules suffixes config are now spec format strings (#38411) 2024-10-21 09:08:59 +02:00
Tamara Dahlgren
260b36e272
Docs: clarify include path options (#47083) 2024-10-21 07:26:18 +02:00
dependabot[bot]
011ff48f82
build(deps): bump python-levenshtein in /lib/spack/docs (#46494)
Bumps [python-levenshtein](https://github.com/rapidfuzz/python-Levenshtein) from 0.25.1 to 0.26.0.
- [Release notes](https://github.com/rapidfuzz/python-Levenshtein/releases)
- [Changelog](https://github.com/rapidfuzz/python-Levenshtein/blob/main/HISTORY.md)
- [Commits](https://github.com/rapidfuzz/python-Levenshtein/compare/v0.25.1...v0.26.0)

---
updated-dependencies:
- dependency-name: python-levenshtein
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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2024-10-19 12:12:13 +02:00
Wouter Deconinck
31bdcd7dc6
rtd: bump sphinx-rtd-theme to 3.0.1 (#47002) 2024-10-19 03:29:36 +02:00
kwryankrattiger
34c89c0f7b
CI RESTful Configuration (#41622)
* CI: Add dynamic mapping section

* Doc: Add documentation for dynamic mapping section

* Add missing schema property

* Fixes from review

* query build fix up
* add warning output for dynamic mapping request errors

* Cleanup ci schema

* Add more protections for disabling/mitigating bad endpoints for dynamic
mapping

* Remove references to "gantry" in the docs

* Fixup rtd header

* Add unit testing for dynamic-mapping section

* Add arch to dynamic-mapping query string

* Tests and cleanup schema
2024-10-16 14:06:09 -06:00
Harmen Stoppels
8c70912b11
Update release documentation (#46991) 2024-10-16 09:11:53 +02:00
psakievich
0477875667
remove concrete spec constraint from spack develop (#46911)
Remove the constraint for concrete specs and simply take the
max(version) if a version is not given. This should default to the
highest infinity version which is also the logical best guess for
doing development.

* Remove concrete verision constriant for develop, set docs

* Add unit-test

* Update lib/spack/docs/environments.rst

Co-authored-by: kwryankrattiger <80296582+kwryankrattiger@users.noreply.github.com>

* Update lib/spack/spack/cmd/develop.py

Co-authored-by: Greg Becker <becker33@llnl.gov>

* Consolidate env collection in cmd

* Style

---------

Co-authored-by: kwryankrattiger <80296582+kwryankrattiger@users.noreply.github.com>
Co-authored-by: Greg Becker <becker33@llnl.gov>
2024-10-15 17:46:27 +00:00
Tamara Dahlgren
507965cbc6
Docs: reduce confusion in configuration override of scope precedence section (#46977) 2024-10-15 04:07:48 +00:00
Nathan Hanford
af62a062cc
Installer: rewire spliced specs via RewireTask (#39136)
This PR allows users to configure explicit splicing replacement of an abstract spec in the concretizer.

concretizer:
  splice:
    explicit:
    - target: mpi
      replacement: mpich/abcdef
      transitive: true

This config block would mean "for any spec that concretizes to use mpi, splice in mpich/abcdef in place of the mpi it would naturally concretize to use. See #20262, #26873, #27919, and #46382 for PRs enabling splicing in the Spec object. This PR will be the first place the splice method is used in a user-facing manner. See https://spack.readthedocs.io/en/latest/spack.html#spack.spec.Spec.splice for more information on splicing.

This will allow users to reuse generic public binaries while splicing in the performant local mpi implementation on their system.

In the config file, the target may be any abstract spec. The replacement must be a spec that includes an abstract hash `/abcdef`. The transitive key is optional, defaulting to true if left out.

Two important items to note:

1. When writing explicit splice config, the user is in charge of ensuring that the replacement specs they use are binary compatible with whatever targets they replace. In practice, this will likely require either specific knowledge of what packages will be installed by the user's workflow, or somewhat more specific abstract "target" specs for splicing, to ensure binary compatibility.
2. Explicit splices can cause the output of the concretizer not to satisfy the input. For example, using the config above and consider a package in a binary cache `hdf5/xyzabc` that depends on mvapich2. Then the command `spack install hdf5/xyzabc` will instead install the result of splicing `mpich/abcdef` into `hdf5/xyzabc` in place of whatever mvapich2 spec it previously depended on. When this occurs, a warning message is printed `Warning: explicit splice configuration has caused the the concretized spec {concrete_spec} not to satisfy the input spec {input_spec}".

Highlighted technical details of implementation:

1. This PR required modifying the installer to have two separate types of Tasks, `RewireTask` and `BuildTask`. Spliced specs are queued as `RewireTask` and standard specs are queued as `BuildTask`. Each spliced spec retains a pointer to its build_spec for provenance. If a RewireTask is dequeued and the associated `build_spec` is neither available in the install_tree nor from a binary cache, the RewireTask is requeued with a new dependency on a BuildTask for the build_spec, and BuildTasks are queued for the build spec and its dependencies.
2. Relocation is modified so that a spack binary can be simultaneously installed and rewired. This ensures that installing the build_spec is not necessary when splicing from a binary cache.
3. The splicing model is modified to more accurately represent build dependencies -- that is, spliced specs do not have build dependencies, as spliced specs are never built. Their build_specs retain the build dependencies, as they may be built as part of installing the spliced spec.
4. There were vestiges of the compiler bootstrapping logic that were not removed in #46237 because I asked alalazo to leave them in to avoid making the rebase for this PR harder than it needed to be. Those last remains are removed in this PR.

Co-authored-by: Nathan Hanford <hanford1@llnl.gov>
Co-authored-by: Gregory Becker <becker33@llnl.gov>
Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2024-10-10 15:48:58 -07:00
AcriusWinter
76243bfcd7
Stand-alone testing: remove deprecated methods (#45752)
* Stand-alone testing: remove deprecated methods
* audit: replace deprecated test method checks for test callbacks (AcriusWinter)
* install_test: replace deprecated with new test method name starts (AcriusWinter)
* package_base: removed deprecated test methods (AcriusWinter)
* test/package_class: remove deprecated test methods (AcriusWinter)
* test/reporters: remove deprecated test methods (AcriusWinter)
* reporters/extract: remove deprecated test-related methods (AcriusWinter)
* py-test-callback: rename test in callbacks and output (AcriusWinter)
* reporters/extract: remove deprecated expected failure output capture (AcriusWinter)
* stand-alone test cleanup: f-string, remove deprecation warning, etc. (AcriusWinter)
* stand-alone tests: f-string fix and remove unused imports (AcriusWinter)
* package_base: finish removing the rest of deprecated run_test method (AcriusWinter)
* py-test-callback: remove stand-alone test method (AcriusWinter)
* package_base: remove now unused imports (AcriusWinter)
* Python: test_imports replaces test (tldahlgren)
* mptensor, trivial-smoke-test: replace deprecated cache_extra_test_sources method (tldahlgren)
* trivial-smoke-test: replace deprecated install_test_root method (tldahlgren)
* docs: update perl and scons package's test methods (tldahlgren)
* builder: remove deprecated test() method (tldahlgren)
* Update legion and mfem test data for stand-alone tests (tldahlgren)
* py-test-callback: restore the test method
* Audit/stand-alone testing: Fix and added stand-alone test audit checks
   - fix audit failure message for build-time test callback check
   - remove empty test method check during stand-alone testing
   - change build-time test callback check to package_properties
   - add test method docstring audit check and mock fail-test-audit-docstring pkg
   - add test method implementation audit check and mock fail-test-audit-impl pkg
   - add new mock packages to test_package_audits and test_test_list_all
* audits: loosen docstring content constraints
* Add missing test method docstring
* py-test-callback: resolve builder issues
* Audits: Add checks for use of deprecated stand-alone test methods; improve output for other test-related checks
* Fix style issues
* test_test_list_all: add new fail-test-audit-deprecated package

---------

Signed-off-by: Tamara Dahlgren <dahlgren1@llnl.gov>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-10-03 11:36:18 +00:00
Tamara Dahlgren
c8efea117f
Docs: environment update (#44087)
Updated the terminology for the two types of environments to be
consistent with that used in the tutorial for the last three years.

Additionally:
* changed 'anonymous' to 'independent in environment command+test for consistency.
2024-10-01 22:26:31 +02:00
Harmen Stoppels
44618e31c8
stable_partition: use TypeVar (#46686) 2024-10-01 15:58:24 +02:00
kwryankrattiger
35b2750407
CI: Add documentation for adding new stacks and runners (#42179)
* CI: Add documentation for adding new stacks and runners
* More docs for runner registration

---------

Co-authored-by: Zack Galbreath <zack.galbreath@kitware.com>
Co-authored-by: Bernhard Kaindl <contact@bernhard.kaindl.dev>
2024-09-27 13:09:41 -07:00
Alec Scott
9b5f15abec
docs: add --depth=2 to reduce download size (#46605)
* docs: add --depth=2 to reduce download size

* Add note to tell users about --depth=2 and manyFiles

* Fix inline code in info block
2024-09-27 09:09:19 -07:00
psakievich
ea6e39805a
Add a custom hook for dev_path changes (#46529)
* Add a custom hook for dev_path changes

Co-authored-by: Greg Becker <becker33@llnl.gov>
2024-09-26 08:59:13 -07:00
Massimiliano Culpo
b93c57cab9
Remove spack.target from code (#46503)
The `spack.target.Target` class is a weird entity, that is just needed to:

1. Sort microarchitectures in lists deterministically
2. Being able to use microarchitectures in hashed containers

This PR removes it, and uses `archspec.cpu.Microarchitecture` directly. To sort lists, we use a proper `key=` when needed. Being able to use `Microarchitecture` objects in sets is achieved by updating the external `archspec`.

Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-09-21 14:05:41 +02:00
John W. Parent
cfee88a5bb
Docs/Windows: Clarify supported shells and caveats (#46381)
While the existing getting started guide does in fact reference the
powershell support, it's a footnote and easily missed. This PR adds
explicit, upfront mentions of the powershell support. Additionally
this PR adds notes about some of the issues with certain components
of the spec syntax when using CMD.
2024-09-20 11:55:17 -07:00
Harmen Stoppels
586360a8fe
Revert "For "when:" and install_environment.json: Support fully qualified hos…" (#46478)
This reverts commit 6b0011c8f1.

It caused a major performance penalty in unit test time on macOS (about 30 minutes).
2024-09-19 15:34:12 +02:00
Harmen Stoppels
7395656663
docs: refer to upstreams.yaml in chain.rst title (#46475) 2024-09-19 13:08:05 +02:00
dependabot[bot]
d04358c369
build(deps): bump urllib3 from 2.2.2 to 2.2.3 in /lib/spack/docs (#46368)
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.2.2 to 2.2.3.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/2.2.2...2.2.3)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: direct:production
  update-type: version-update:semver-patch
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2024-09-13 08:15:21 -05:00
dependabot[bot]
d8d1bc5d7e
build(deps): bump pytest from 8.3.2 to 8.3.3 in /lib/spack/docs (#46315)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.3.2 to 8.3.3.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.3.2...8.3.3)

---
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- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-patch
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2024-09-12 08:57:05 -07:00
Massimiliano Culpo
ffdfa498bf
Deprecate config:install_missing_compilers (#46237)
The option config:install_missing_compilers is currently buggy,
and has been for a while. Remove it, since it won't be needed
when compilers are treated as dependencies.

Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-09-10 20:02:05 +02:00
Harmen Stoppels
9059756a11
reindex: do not assume fixed layout (#46170)
`spack reindex` relies on projections from configuration to locate
installed specs and prefixes. This is problematic because config can
change over time, and we have reasons to do so when turning compilers
into depedencies (removing `{compiler.name}-{compiler.version}` from
projections)

This commit makes reindex recursively search for .spack/ metadirs.
2024-09-09 17:26:30 +02:00
Georgia Stuart
d463d4566d
docs: update conditional definition arch (#46139)
Signed-off-by: Georgia Stuart <gstuart@umass.edu>

Co-authored-by: Jordan Galby <67924449+Jordan474@users.noreply.github.com>
2024-09-02 08:32:26 +02:00
Jordan Galby
6b0011c8f1
For "when:" and install_environment.json: Support fully qualified hostname (#45522) 2024-08-28 18:38:54 +02:00
psakievich
1b82779087
Add options for sparse checkout in GitFetcher (#45473)
* Add options for sparse checkout in GitFetcher

Newer versions of git have a beta feature called sparse checkout
that allow users to check out a portion of a large repo.

This feature will be ideal for monolithic repo projects that want to
model their infrastructure via spack.  This PR implements an addition
to the GitFetcher that allows users to add a `git_sparse_paths`
attribute to package classes or versions which will then use sparse
checkout on those directories/files for the package.

* Style

* Split git clone into multiple functions

* Add sparse-checkout impl

* Internalize src clone functions

* Docs

* Adding sparse clone test

* Add test for partial clone

* [@spackbot] updating style on behalf of psakievich

* Small fixes

* Restore default branch status

* Fix attributes for package

* Update lib/spack/docs/packaging_guide.rst

Co-authored-by: Matthew Mosby <44072882+mdmosby@users.noreply.github.com>

* Extend unit test to multiple git versions

* style

---------

Co-authored-by: psakievich <psakievich@users.noreply.github.com>
Co-authored-by: Matthew Mosby <44072882+mdmosby@users.noreply.github.com>
2024-08-15 05:28:34 +00:00
Harmen Stoppels
a66586d749
spack buildcache push: best effort (#45631)
"spack buildcache push" for partially installed environments pushes all it 
can by default, and only dumps errors towards the end.

If --fail-fast is provided, error out before pushing anything if any
of the packages is uninstalled

oci build caches using parallel push now use futures to ensure pushing
goes in best-effort style.
2024-08-13 08:12:48 +02:00
dependabot[bot]
4a8d09dcc1
build(deps): bump flake8 from 7.1.0 to 7.1.1 in /lib/spack/docs (#45588)
Bumps [flake8](https://github.com/pycqa/flake8) from 7.1.0 to 7.1.1.
- [Commits](https://github.com/pycqa/flake8/compare/7.1.0...7.1.1)

---
updated-dependencies:
- dependency-name: flake8
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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2024-08-06 07:08:57 +02:00
dependabot[bot]
f3bd820374
build(deps): bump pytest from 8.3.1 to 8.3.2 in /lib/spack/docs (#45461)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.3.1 to 8.3.2.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.3.1...8.3.2)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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2024-08-04 05:44:52 +00:00
dependabot[bot]
1090895e72
build(deps): bump black from 24.4.2 to 24.8.0 in /lib/spack/docs (#45563)
Bumps [black](https://github.com/psf/black) from 24.4.2 to 24.8.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/24.4.2...24.8.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
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2024-08-03 21:48:50 -05:00
dependabot[bot]
e983f4a858
build(deps): bump sphinx-design from 0.6.0 to 0.6.1 in /lib/spack/docs (#45562)
Bumps [sphinx-design](https://github.com/executablebooks/sphinx-design) from 0.6.0 to 0.6.1.
- [Release notes](https://github.com/executablebooks/sphinx-design/releases)
- [Changelog](https://github.com/executablebooks/sphinx-design/blob/main/CHANGELOG.md)
- [Commits](https://github.com/executablebooks/sphinx-design/compare/v0.6.0...v0.6.1)

---
updated-dependencies:
- dependency-name: sphinx-design
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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2024-08-03 21:46:19 -05:00
dependabot[bot]
3ee6507dd6
build(deps): bump mypy from 1.11.0 to 1.11.1 in /lib/spack/docs (#45530)
Bumps [mypy](https://github.com/python/mypy) from 1.11.0 to 1.11.1.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/v1.11...v1.11.1)

---
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  dependency-type: direct:production
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2024-08-02 17:01:25 -06:00
dependabot[bot]
6ea944bf17
build(deps): bump pytest from 8.2.2 to 8.3.1 in /lib/spack/docs (#45377)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.2.2 to 8.3.1.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.2.2...8.3.1)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
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2024-07-23 11:53:55 -04:00
dependabot[bot]
8c6177c47f
build(deps): bump sphinx from 7.4.6 to 7.4.7 in /lib/spack/docs (#45376)
Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 7.4.6 to 7.4.7.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES.rst)
- [Commits](https://github.com/sphinx-doc/sphinx/compare/v7.4.6...v7.4.7)

---
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- dependency-name: sphinx
  dependency-type: direct:production
  update-type: version-update:semver-patch
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2024-07-23 11:53:43 -04:00
dependabot[bot]
0d04223ccd
build(deps): bump mypy from 1.10.1 to 1.11.0 in /lib/spack/docs (#45337)
Bumps [mypy](https://github.com/python/mypy) from 1.10.1 to 1.11.0.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/v1.10.1...v1.11)

---
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2024-07-20 11:25:31 -05:00
Wouter Deconinck
24b73da9e6
docs: util/environment.py: use re.Pattern[str] instead of re (#45329)
* docs: util/environment.py: use `re.Pattern[str]` instead of `re`

* docs: sphinx==7.4.6
2024-07-19 20:03:07 +02:00
Tamara Dahlgren
737b70cbbf
Buildcache: remove deprecated --allow-root and preview subcommand (#45204) 2024-07-11 18:19:04 -07:00
Harmen Stoppels
3212cf86f4
environments.rst: go from simple to advanced (#45004)
* environments.rst: go from simple to advanced
* improvements
* notes about activation
2024-07-08 15:36:18 -07:00
Wouter Deconinck
04044a9744
containers: rm centos7 since EOL (#45049) 2024-07-04 22:22:23 +02:00
Massimiliano Culpo
6b85f6b405
ci: deprecate the --dependencies and --optimize option (#45005) 2024-07-02 22:06:52 +02:00
Tamara Dahlgren
61d6fc70e8
Docs: include cmake spec property for the command (#44956) 2024-07-01 10:28:26 -07:00
dependabot[bot]
d6419f32b8
build(deps): bump mypy from 1.10.0 to 1.10.1 in /lib/spack/docs (#44885)
Bumps [mypy](https://github.com/python/mypy) from 1.10.0 to 1.10.1.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/v1.10.0...v1.10.1)

---
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  dependency-type: direct:production
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2024-06-27 12:40:14 +02:00
Miguel
60ed682577
Fix typo in docs (#44891)
Fixes on the rst formatting of the make_jobs
2024-06-27 12:32:16 +02:00
Wouter Deconinck
f916b50491
containers: centos:stream -> centos:stream9 (#44876) 2024-06-27 10:38:56 +02:00
Tamara Dahlgren
baf82c0245
Docs: Update stand-alone test information (#44755)
Update and slightly reorganize stand-alone test information to include new and improved examples and more links that can be used in PR feedback.
2024-06-25 13:33:41 -07:00
Miguel
536856874c
add documentation for make_jobs variable (#44838)
* add documentation for make_jobs variable

* apply suggested changes

* Update packaging_guide.rst

add suggestions to the documentation

* Update packaging_guide.rst

fix missing quotes in the documentation

* suggestions to packaging_guide.rst
2024-06-25 11:24:49 -06:00
dependabot[bot]
a82fb33b31
build(deps): bump flake8 from 7.0.0 to 7.1.0 in /lib/spack/docs (#44752) 2024-06-18 08:27:15 +02:00
dependabot[bot]
5f35a90529
build(deps): bump urllib3 from 2.2.1 to 2.2.2 in /lib/spack/docs (#44751) 2024-06-18 08:27:04 +02:00
dependabot[bot]
f80287166e
build(deps): bump sphinx-design from 0.5.0 to 0.6.0 in /lib/spack/docs (#44360)
Bumps [sphinx-design](https://github.com/executablebooks/sphinx-design) from 0.5.0 to 0.6.0.
- [Release notes](https://github.com/executablebooks/sphinx-design/releases)
- [Changelog](https://github.com/executablebooks/sphinx-design/blob/main/CHANGELOG.md)
- [Commits](https://github.com/executablebooks/sphinx-design/compare/v0.5.0...v0.6.0)

---
updated-dependencies:
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  dependency-type: direct:production
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2024-06-06 14:34:59 +02:00
dependabot[bot]
a20d34b8aa
build(deps): bump pytest from 8.2.1 to 8.2.2 in /lib/spack/docs (#44553)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.2.1 to 8.2.2.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.2.1...8.2.2)

---
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  dependency-type: direct:production
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2024-06-06 08:38:54 +02:00
Massimiliano Culpo
f242e0fd0c
remove platform=cray (#43796)
Remove support for `cray` as a separate platform.

Any platform previously detected as `cray` is now detected as `linux`.

Users who still need platform=cray have to stick to Spack 0.22
2024-05-30 14:21:32 +02:00
mSamiolo
b9816a97fc
docs: update chain.rst to improve discussion of upstreams (#43918)
* Update chain.rst

* Update lib/spack/docs/chain.rst

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* Update lib/spack/docs/chain.rst

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* docs: rm leading spaces to avoid indent

---------

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-05-22 22:04:53 +00:00
dependabot[bot]
86fb547f7c
bump pytest from 8.2.0 to 8.2.1 --- (#44282)
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-patch
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2024-05-21 13:42:22 +02:00
Todd Gamblin
77c83af17d
docs: remove warning about repositories and package extension (#44247)
Local package repositories are very well supported and we test them extensively, so this
warning from 8 years ago can be removed from the docs.
2024-05-17 22:03:57 +00:00
Chris Marsh
24edc72252
docs: show phase signature for builders (#44067) 2024-05-17 18:16:31 +02:00
Andrew-Dunning-NNL
a24ca50fed
Fix broken link in docs (#44217) 2024-05-17 12:58:11 +00:00
dependabot[bot]
8b4cbbe7b3
build(deps): bump pygments from 2.17.2 to 2.18.0 in /lib/spack/docs (#44044)
Bumps [pygments](https://github.com/pygments/pygments) from 2.17.2 to 2.18.0.
- [Release notes](https://github.com/pygments/pygments/releases)
- [Changelog](https://github.com/pygments/pygments/blob/master/CHANGES)
- [Commits](https://github.com/pygments/pygments/compare/2.17.2...2.18.0)

---
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2024-05-07 18:55:04 +02:00
Richarda Butler
be71f9fdc4
Include concrete environments with include_concrete (#33768)
Add the ability to include any number of (potentially nested) concrete environments, e.g.:

```yaml
   spack:
     specs: []
     concretizer:
         unify: true
     include_concrete:
     - /path/to/environment1
     - /path/to/environment2
```

or, from the CLI:

```console
   $ spack env create myenv
   $ spack -e myenv add python
   $ spack -e myenv concretize
   $ spack env create --include-concrete myenv included_env
```

The contents of included concrete environments' spack.lock files are
included in the environment's lock file at creation time. Any changes
to included concrete environments are only reflected after the environment
is re-concretized from the re-concretized included environments.

- [x] Concretize included envs
- [x] Save concrete specs in memory by hash
- [x] Add included envs to combined env's lock file
- [x] Add test
- [x] Update documentation

    Co-authored-by: Kayla Butler <<butler59@llnl.gov>
    Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.co
m>
    Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
    Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-05-07 09:32:40 -07:00
psakievich
d22bdc1c4e
certs: fix interpolation and disallow relative paths (#44030) 2024-05-07 11:16:32 +02:00
Harmen Stoppels
125206d44d
python: always use a venv (#40773)
This commit adds a layer of indirection to improve build isolation with 
and without external Python, as well as usability of environment views.

It adds `python-venv` as a dependency to all packages that `extends("python")`, 
which has the following advantages:

1. Build isolation: only `PYTHONPATH` is considered in builds, not 
   user / system packages
2. Stable install layout: fixes the problem on Debian, RHEL and Fedora where 
   external / system python produces `bin/local` subdirs in Spack install prefixes. 
3. Environment views are Python virtual environments (and if you add 
   `py-pip` things like `pip list` work)

Views work whether they're symlink, hardlink or copy type.

This commit additionally makes `spec["python"].command` return 
`spec["python-venv"].command`. The rationale is that packages in repos we do 
not own do not pass the underlying python to the build system, which could still 
result in incorrectly computed install layouts.

Other attributes like `libs`, `headers` should be on `python` anyways and need no change.
2024-05-06 16:17:35 +02:00
Massimiliano Culpo
d654d6b1f4
Remove Fedora 37 and 38, Ubuntu 18 from CI (#44006) 2024-05-06 15:51:45 +02:00
Greg Becker
1f31c3374c
External package detection for compilers (#43464)
This creates shared infrastructure for compiler packages to implement the 
detailed search capabilities from the `spack compiler find` command for the 
`spack external find` command.

After this commit, `spack compiler find` can be replaced with 
`spack external find --tag compiler`, with the exception of mixed toolchains.
2024-05-06 10:33:33 +02:00
Harmen Stoppels
715214c1a1
spack env create <env>: dir if dir-like (#44024)
A named env cannot contain `.` and `/`.

So when a user runs `spack env create ./here` do not error but treat it
as `spack env create -d ./here`.

Also fix help string of `spack env create`, which seems to have been
copied from `activate` incorrectly.
2024-05-06 02:00:23 -06:00
dependabot[bot]
b471d62dbd
build(deps): bump black from 24.4.0 to 24.4.2 in /lib/spack/docs (#43878)
Bumps [black](https://github.com/psf/black) from 24.4.0 to 24.4.2.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/24.4.0...24.4.2)

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2024-05-06 09:55:43 +02:00
dependabot[bot]
74fe498cb8
build(deps): bump mypy from 1.9.0 to 1.10.0 in /lib/spack/docs (#43834)
Bumps [mypy](https://github.com/python/mypy) from 1.9.0 to 1.10.0.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/1.9.0...v1.10.0)

---
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  update-type: version-update:semver-minor
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2024-05-04 15:48:49 -07:00
Todd Gamblin
cc85dc05b7
docs: re-enable google analytics (#43974)
We recently switched to using the new ReadTheDocs with "addons". That includes its own
analytics, which is nice, but we also want to continue using our GA4 analytics.

Adding GA4 is no longer supported by RTD, so we have to add it manually.

- [x] re-add the gtag to all pages, manually

Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-05-02 21:56:19 -04:00
John W. Parent
7e8415a3a6
Windows: auto-add WGL/SDK as externals (#43752)
Adds a pre-concretization check for the Windows SDK and WGL (Windows
GL) packages as non-buildable externals.

This is a redo of https://github.com/spack/spack/pull/43459, but makes
sure to modify the configuration scope outside of the bootstrap scope:
whichever is highest-precedence in the user's environment at the time
the concretization runs, which should either be an env scope or the
~ scope.

Adds pytest fixture mocking the check for WGL and WSDK as if they were
present.
2024-05-02 01:05:03 -06:00
Massimiliano Culpo
4e876b4014
Allow more control over which specs are reused (#42782)
This PR gives users finer control over which specs are reused during concretization.

The value of the `concretizer:reuse` config option now can take an object with the following properties:
- `roots`: true if reusing roots, false if reusing just dependencies
- `exclude`: list of constraints used to select reusable specs 
- `include`: list of constraints used to select reusable specs 
- `from`: allows to select the sources of reused specs

### Examples

#### Reuse only specs compiled with GCC
```yaml
concretizer:
  reuse:
    roots: true
    include:
    - "%gcc"
```

#### `openmpi` must be used from externals, and it must be the only external used
```yaml
concretizer:
  reuse:
    roots: true
    from:
    - type: local
      exclude:
      - "openmpi"
    - type: buildcache
      exclude:
      - "openmpi"
    - type: external
      include:
      - "openmpi"
```
2024-05-01 23:05:26 -04:00
Wouter Deconinck
067155cff5
containers: add ubuntu 24.04 (#43881)
* containers: add ubuntu 24.04

* containers: use python3-boto3 pkg instead of pip install
2024-05-01 13:37:13 +02:00
dependabot[bot]
be48f762a9
build(deps): bump pytest from 8.1.1 to 8.2.0 in /lib/spack/docs (#43908)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.1.1 to 8.2.0.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.1.1...8.2.0)

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2024-05-01 13:29:22 +02:00
Jonathon Anderson
ae9f2d4d40
containers: Add Fedora 40, 39 (#43847) 2024-04-26 20:02:04 -05:00
Massimiliano Culpo
ac9012da0c
spack audit externals: allow selecting platforms and checking extra attributes (#43782) 2024-04-26 12:47:17 +02:00
John W. Parent
641ab95a31
Revert "Windows: add win-sdk/wgl externals during bootstrapping (#43459)" (#43819)
This reverts commit 9e2558bd56.
2024-04-24 18:24:28 +02:00
Harmen Stoppels
01f61a2eba
Remove import distro from packages and docs (#43772) 2024-04-23 12:47:33 +02:00
John W. Parent
9e2558bd56
Windows: add win-sdk/wgl externals during bootstrapping (#43459)
On Windows, bootstrapping logic now searches for and adds the win-sdk
and wgl packages to the user's top scope as externals if they are not
present.

These packages are generally required to install most packages with
Spack on Windows, and are only available as externals, so it is
assumed that doing this automatically would be useful and avoid
a mandatory manual step for each new Spack instance.

Note this is the first case of bootstrapping logic modifying
configuration other than the bootstrap configuration.
2024-04-18 10:20:04 -07:00
Tamara Dahlgren
36ea208e12
Twitter->X: Reflect the name (only) change (#43690) 2024-04-18 08:52:54 -07:00
dependabot[bot]
1a7baadbff
build(deps): bump python-levenshtein in /lib/spack/docs (#43543)
Bumps [python-levenshtein](https://github.com/rapidfuzz/python-Levenshtein) from 0.25.0 to 0.25.1.
- [Release notes](https://github.com/rapidfuzz/python-Levenshtein/releases)
- [Changelog](https://github.com/rapidfuzz/python-Levenshtein/blob/main/HISTORY.md)
- [Commits](https://github.com/rapidfuzz/python-Levenshtein/compare/v0.25.0...v0.25.1)

---
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  dependency-type: direct:production
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2024-04-15 18:00:24 +02:00
dependabot[bot]
7903f9fcfd
build(deps): bump black from 24.3.0 to 24.4.0 in /lib/spack/docs (#43642)
Bumps [black](https://github.com/psf/black) from 24.3.0 to 24.4.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/24.3.0...24.4.0)

---
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  dependency-type: direct:production
  update-type: version-update:semver-minor
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2024-04-15 16:40:37 +02:00
Radim Janalík
d23e06c27e
Allow packages to be pushed to build cache after install from source (#42423)
This commit adds a property `autopush` to mirrors. When true, every source build is immediately followed by a push to the build cache. This is useful in ephemeral environments such as CI / containers.

To enable autopush on existing build caches, use `spack mirror set --autopush <name>`. The same flag can be used in `spack mirror add`.
2024-04-11 19:43:13 -06:00
psakievich
7afa949da1
Add handling of custom ssl certs in urllib ops (#42953)
This PR allows the user to specify a path to a custom cert file (or directory) in
Spack's config:

```yaml
  # This is where custom certs for proxy/firewall are stored.
  # It can be a path or environment variable. To match ssl env configuration
  # the default is the environment variable SSL_CERT_FILE
  ssl_certs: $SSL_CERT_FILE
```

`config:ssl_certs` can be a path to a file or a directory, or it can be and environment
variable that resolves to one of those. When it posts to something valid, Spack will
update the ssl context to include custom certs, and fetching via `urllib` and `curl`
will trust the provided certs.

This should resolve many issues with fetching behind corporate firewalls.


---------

Co-authored-by: psakievich <psakievich@users.noreply.github.com>
Co-authored-by: Alec Scott <alec@bcs.sh>
2024-04-01 11:11:13 -07:00
Harmen Stoppels
c3eaf4d6cf
Support for prereleases (#43140)
This adds support for prereleases. Alpha, beta and release candidate
suffixes are ordered in the intuitive way:

```
1.2.0-alpha < 1.2.0-alpha.1 < 1.2.0-beta.2 < 1.2.0-rc.3 < 1.2.0 < 1.2.0-xyz
```

Alpha, beta and rc prereleases are defined as follows: split the version
string into components like before (on delimiters and string boundaries).
If there's a string component `alpha`, `beta` or `rc` followed by an optional
numeric component at the end, then the version is prerelease.

So `1.2.0-alpha.1 == 1.2.0alpha1 == 1.2.0.alpha1` are all the same, as usual.

The strings `alpha`, `beta` and `rc` are chosen because they match semver,
they are sufficiently long to be unambiguous, and and all contain at least
one non-hex character so distinguish them from shasum/digest type suffixes.

The comparison key is now stored as `(release_tuple, prerelease_tuple)`, so in
the above example:

```
((1,2,0),(ALPHA,)) < ((1,2,0),(ALPHA,1)) < ((1,2,0),(BETA,2)) < ((1,2,0),(RC,3)) < ((1,2,0),(FINAL,)) < ((1,2,0,"xyz"), (FINAL,))
```

The version ranges `@1.2.0:` and `@:1.1` do *not* include prereleases of
`1.2.0`.

So for packaging, if the `1.2.0alpha` and `1.2.0` versions have the same constraints on
dependencies, it's best to write

```python
depends_on("x@1:", when="@1.2.0alpha:")
```

However, `@1.2:` does include `1.2.0alpha`. This is because Spack considers
`1.2 < 1.2.0` as distinct versions, with `1.2 < 1.2.0alpha < 1.2.0` as a consequence.

Alternatively, the above `depends_on` statement can thus be written

```python
depends_on("x@1:", when="@1.2:")
```

which can be useful too. A short-hand to include prereleases, but you
can still be explicit to exclude the prerelease by specifying the patch version
number.

### Concretization

Concretization uses a different version order than `<`. Prereleases are ordered
between final releases and develop versions. That way, users should not
have to set `preferred=True` on every final release if they add just one
prerelease to a package. The concretizer is unlikely to pick a prerelease when
final releases are possible.

### Limitations

1. You can't express a range that includes all alpha release but excludes all beta
   releases. Only alternative is good old repeated nines: `@:1.2.0alpha99`.

2. The Python ecosystem defaults to `a`, `b`, `rc` strings, so translation of Python versions to
   Spack versions requires expansion to `alpha`, `beta`, `rc`. It's mildly annoying, because
   this means we may need to compute URLs differently (not done in this commit).

### Hash

Care is taken not to break hashes of versions that do not have a prerelease
suffix.
2024-03-22 23:30:32 +01:00
Pieter P
429c3598af
Fix CMake generator documentation (#43232) 2024-03-18 10:02:33 +01:00
dependabot[bot]
96061d2c00
build(deps): bump black from 24.2.0 to 24.3.0 in /lib/spack/docs (#43228)
Bumps [black](https://github.com/psf/black) from 24.2.0 to 24.3.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/24.2.0...24.3.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-03-15 17:24:44 -06:00
Greg Becker
59c7ff8683
Allow compilers to be configured in packages.yaml (#42016)
Co-authored-by: becker33 <becker33@users.noreply.github.com>
2024-03-15 11:01:49 +01:00
dependabot[bot]
cc28334049
build(deps): bump pytest from 8.0.2 to 8.1.1 in /lib/spack/docs (#43134)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.0.2 to 8.1.1.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/8.0.2...8.1.1)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-03-14 07:40:15 +01:00
Tamara Dahlgren
1e9c46296c
perl testing: refactor stand-alone testing into base class (#43044) 2024-03-12 15:39:18 +01:00
dependabot[bot]
1e413477dd
build(deps): bump mypy from 1.8.0 to 1.9.0 in /lib/spack/docs (#43103)
Bumps [mypy](https://github.com/python/mypy) from 1.8.0 to 1.9.0.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/v1.8.0...1.9.0)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-03-10 18:54:58 -07:00
runiq
82c380b563
Fix spack find bootstrapping docs (#43074)
Closes #43052.

Maybe moving the argument to the `find` subcommand is a good idea, but I
just wanted to get the docs fix out.

Co-authored-by: Patrice Peterson <patrice.peterson@itz.uni-halle.de>
2024-03-07 14:13:32 +01:00
Tim Fuller
7e468aefd5
Allow loading extensions through python entry-points (#42370)
This PR adds the ability to load spack extensions through `importlib.metadata` entry 
points, in addition to the regular configuration variable.

It requires Python 3.8 or greater to be properly supported.
2024-03-06 11:18:49 +01:00