Commit Graph

34896 Commits

Author SHA1 Message Date
Vanessasaurus
182ef042ce Automated deployment to update package flux-sched 2023-04-01 (#36591)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-04-03 10:48:27 -07:00
Massimiliano Culpo
9d68100891 Rework error handling within the ASP logic program (#36536)
* Reduce effort on grounding by employing cardinality constraints

If we use a cardinality constraint instead of a rule
using pair of values, we'll end up grounding 1 rule
instead of all the possible pair combinations of the
allowed values.

* Display all errors from concretization, instead of just one

If clingo produces multiple "error" facts, we now print all
of them in the error message. Before we were printing just
the one with the least priority.

Consolidate a few common patterns in concretize.lp to ensure
that certain node attributes have one and only one value
assigned.

All errors are displayed, so use a single criterion
instead of three.

* Account for weights in concretize.lp

To recover the optimization order we had before, account
for weights of errors when minimizing.

The priority is mapped to powers of 10, so to effectively
get back the same results as with priorities.
2023-04-03 19:23:29 +02:00
Axel Huebl
ebffc53b93 openPMD-api: 0.15.1 (#36604)
Latest patch release, fixing build issues.
2023-04-03 16:39:34 +02:00
Robert Cohn
4c3edac454 namd: add oneapi support (#36139) 2023-04-03 16:39:09 +02:00
Matin Raayai
5e33f6bbc5 External Detection for llvm-amdgpu (#36595)
* Added external detection of llvm-amdgpu.

* Style cleaning for llvm-amdgpu.
2023-04-03 14:51:58 +02:00
Harmen Stoppels
a19f13f57a zstd: fix makefile build, default to makefile (#36606) 2023-04-03 14:50:38 +02:00
Harmen Stoppels
93cad90413 openblas: use "all" target since it's marked sequential (#35905)
openblas likes to concurrently writes to the same archive from different
targets, and solves that through .NOTPARALLEL: all

We run `make x y z` which is not affected by `NOTPARALLEL`, running into
races.
2023-04-03 11:45:38 +02:00
Xavier Delaruelle
7e4927b892 modules: correctly detect explicit installation (#36533)
When generating modulefile, correctly detect software installation asked
by user as explicit installation.

Explicit installation status were previously fetched from database
record of spec, which was only set after modulefile generation.

Code is updated to pass down the explicit status of software
installation to the object that generates modulefiles.

Fixes #34730.
Fixes #12105.

A value for the explicit argument has to be set when creating a new
installation, but for operations on existing installation, this value is
retrieved from database. Such operations are: module rm, module refresh,
module setdefaults or when get_module function is used.

Update on the way tests that mimics an installation, thus explicit
argument has to be set under such situation.
2023-04-03 11:19:18 +02:00
Harmen Stoppels
88548ba76f binutils 2.40: add missing zstd dep (#36598) 2023-04-03 06:41:38 +02:00
Laura Weber
2117e37a0b sublime-text: Fix the dependencies of the recent update (#36562) 2023-04-02 19:53:54 +02:00
Tristan Carel
ac62817ba0 petsc: simplify dependencies with hypre (#36573)
* petsc: simplify dependencies with hypre

* add propagation of `complex` variant to hypre
2023-04-02 10:00:10 -05:00
Harmen Stoppels
08cf82b977 papyrus: disable tests (#36599) 2023-04-02 13:34:25 +02:00
Leonard-Anderson-NNL
4242989f22 New package: py-mike and dependency. (#36587)
Co-authored-by: Cloud User <leonardanderson@leonardander004.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2023-04-01 21:53:48 -05:00
Juan Miguel Carceller
b524351e10 root: vc variant: root accepts only vc version 1.3.0 (#36594)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-04-01 21:47:34 +02:00
Alex Richert
b9bde03df5 yafyaml: Add fismahigh variant to comply with FISMA standards (#36471) 2023-04-01 21:12:00 +02:00
Satish Balay
5c3bc36fde petsc,py-petsc4py,slepc,py-slepc4py: add version 3.19.0 (#36588) 2023-04-01 12:40:19 -05:00
John W. Parent
2a2c9cdf02 CMake: add version 3.26.2 (#36567) 2023-04-01 15:21:13 +02:00
Bernhard Kaindl
8b98564840 libxpm: Fix linking with libintl (#36568)
Original Author of this change: Chris Green <greenc@fnal.gov>

Two changes:
- Remove adding the library path using -L: It is obsolete now
  that we have the library paths in before the system paths.
- Link with -linto only if the gettext recipe provides it:
  When we are on a glibc system, we can use external gettext,
  which means we use the libintl inside libc.so: no -lintl then.

This change was already submitted in #35450 and reviewed but is
stuck in this big PR which is trying to do too in a single PR.
2023-04-01 15:11:14 +02:00
John W. Parent
d79c8179fc Perl package: change attr to method (#36580)
This fixes a bug in the Windows build of Perl.

An attribute defined in package class is inaccessible from the install
method due to builder: refactor it to be a method.
2023-03-31 21:57:55 -04:00
John W. Parent
1175831203 netcdf-c package: fix patch applied on Windows (#36581) 2023-03-31 20:52:36 -04:00
Rocco Meli
210b2e8caa MDAnalysis 2.4.3 (#36541)
* mda 2.4.3

* black

* mda update and reshuffle

* add tidynamics
2023-03-31 18:47:56 +00:00
John W. Parent
a8e2961010 Allow configurable stage names (#36509)
Add `config:stage_name` which is a Spec format string that can
customize the names of stages created by Spack. This was primarily
created to allow generating shorter stage names on Windows (along
with `config:build_stage`, this can be used to create stages with
short absolute paths).

By default, this is not set and the prior name stage format is used.

This also removes the username component that is always added to
Stage paths on Windows (if users want to include this, they can
add it to the `build_stage`).
2023-03-31 11:46:47 -07:00
Alec Scott
a6a364d3b8 py-aioitertools: add v0.11.0 (#36540)
* py-aioitertools: add v0.11.0

* Update var/spack/repos/builtin/packages/py-aioitertools/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-03-31 14:16:12 -04:00
Harmen Stoppels
46bbce1922 compiler wrapper: fix -Xlinker parsing (#35929)
* compiler wrapper: fix -Xlinker parsing
* handle the case of -rpath without value; avoid that we drop the flag
* also handle the -Xlinker -rpath -Xlinker without further args case...
* fix test
* get rid of global $rp var, reduce branching
2023-03-31 09:47:24 -07:00
Satish Balay
14465e61ae petsc: builds break with gnu-make-4.4.1 (#35906)
Use 'make' detected by spack within petsc build
2023-03-31 09:28:48 -07:00
kwryankrattiger
4064191fbc Ascent: Drop VTK-h dependency for 0.9 (#36458)
* Ascent: Drop VTK-h dependency for 0.9

* Ascent: Remove duplicate OpenMP constraints

* Ascent: 0.9.0 cannot build with vtk-m@2

* Ascent: Only needs vtkm when using vtkh

* Ascent: Require fides when building with ADIOS2
2023-03-31 11:24:45 -05:00
renjithravindrankannath
7bb64b526f rocsparse: exclude v5.4 from being patched (#36571) 2023-03-31 18:14:04 +02:00
Cameron Rutherford
4f42092f4f hiop: add v0.7.2 (#36570) 2023-03-31 11:33:26 -04:00
Tristan Carel
3b5b9e8474 steps: add variants gmsh and kokkos (#36543) 2023-03-31 11:27:58 -04:00
Paul Romano
aabd76cb74 OpenMC: add v0.13.3 (#36564)
* OpenMC: add v0.13.3

* Add missing version in list for py-openmc
2023-03-31 11:18:26 -04:00
H. Joe Lee
fbde853360 hdf5: add a map variant (#35523)
* hdf5: add map variant
* hdf5: add mininum version for map variant
* hdf5: fix black error
2023-03-31 10:48:08 -04:00
Benjamin Meyers
951f691d1b New: py-dalib, py-qdldl, py-qpsolvers; Update: py-ecos, py-scs, py-osqp (#36549)
* New: py-dalib, py-qdldl, py-qpsolvers; Update: py-ecos, py-scs, py-osqp

* [@spackbot] updating style on behalf of meyersbs

* Update py-qpsolvers homepage

* Add when clause to py-future
2023-03-31 09:34:02 -05:00
Benjamin Meyers
27978fd355 New package py-json2html (#36111)
* New package py-json2html

* Remove deprecated python deps
2023-03-31 09:32:31 -05:00
John W. Parent
349b5d982b Add latet CMake release (#36119) 2023-03-31 08:28:49 -04:00
Ashwin Kumar Karnad
c2c56c1ca1 octopus: Add sparskit variant (#36494)
Co-authored-by: Hans Fangohr <fangohr@users.noreply.github.com>
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
2023-03-31 08:18:53 -04:00
Weston Ortiz
7e06b5bc88 goma: add additional versions up to 7.4.3 (#36561) 2023-03-31 06:49:12 -04:00
Miroslav Stoyanov
17cec3b101 Deprecate old tasmanian (#36534)
* deprecated old versions and deps
* syntax fix

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-03-31 06:48:48 -04:00
Harmen Stoppels
b0e7b8c794 typehint a few globals (#36544) 2023-03-31 08:32:56 +02:00
Alec Scott
98ac3acc92 py-aiobotocore: add v2.5.0 (#36538)
* py-aiobotocore: add v2.5.0

* Fix dependencies for v2.5.0

* Add py-botocore@1.29.76
2023-03-30 20:52:37 -05:00
Benjamin Meyers
7d66c3b5d1 New package py-coclust (#36548)
* New package py-coclust

* [@spackbot] updating style on behalf of meyersbs
2023-03-30 20:41:15 -05:00
Benjamin Meyers
ae9a65ae56 New package py-soyclustering (#36550)
* New package py-soyclustering

* [@spackbot] updating style on behalf of meyersbs
2023-03-30 20:33:33 -05:00
Michael Kuhn
996442ea9b py-h5py: add 3.8.0 (#35960) 2023-03-30 20:20:55 -05:00
marcosmazz
bd20b7b8b7 QE v7.1 add post-processing tools installation (#36484)
* QE v7.1 add post-processing tools installation

Quantum-Espersso@7.1 ships with an incoplete CMakeLists.txt that prevents the installation of post-processing tools.
Added patches, is fixed in two different commits in upstream.

* fixed style

* removed spaces

* added MR references
2023-03-30 16:28:14 -07:00
Scott Wittenburg
08426ec492 gitlab ci: request more memory for publish job (#36560) 2023-03-31 00:19:59 +02:00
Adam J. Stewart
f863859bde py-lightning: add v2.0.1 (#36565) 2023-03-30 17:57:31 -04:00
Ashwin Kumar Karnad
07559d778e octopus: Add berkeleygw variant (#36495)
* octopus: Add berkeleygw variant
* octopus: style fix
2023-03-30 14:57:05 -07:00
Edoardo Aprà
33833a4f32 nwche: add v7.2.0 (#36193)
* removed env variables now default. added spec fftw3. removed obsolete version 7.0.0

* tweak NWCHEM_MODULES based on version
2023-03-30 22:15:56 +02:00
Adam J. Stewart
e544bb6271 py-scipy: py-pythan is only a build dep (#36528) 2023-03-30 16:13:17 -04:00
Massimiliano Culpo
e1a104e3a2 Add type-hints to spack.bootstrap (#36491) 2023-03-30 22:12:18 +02:00
Alex Richert
f5624f096c perl: add patching to allow building with intel@19.1.3 (#35666) 2023-03-30 13:07:33 -04:00