If you use git to clone a repository ssh, git transfers control the ssh
binary available on your path, if that ssh binary was built with
contradictory version of openssl/kerberos, then your git commands will
fail.
* sirius, update versions, fixes, add missing options
- sirius/spfft: depend on fftw-api
- cleanup +shared option
- sirius add option for memory pool
- sirius add version 6.5.3 and 6.5.4
- sirius: add spfft dependency for @master, @develop
* add nlcglib package
Robust wave function optimization for SIRIUS.
* add q-e-sirius package
based on q-e package
* Update var/spack/repos/builtin/packages/q-e-sirius/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* nlcglib: pass nvcc_wrapper to cmake
* Add 6.5.6
* Make flake8 happy
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
* canu: fix depends issue & using java instead of jdk
* Update var/spack/repos/builtin/packages/canu/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* typo error correction
* Adding recipe for `colorspacious` (a python package)
* Copyright year changed
* revert last commit on basic_usage.rst
* better with a good description
* fix according to failed test
* Update var/spack/repos/builtin/packages/py-colorspacious/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-colorspacious/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Additional versions of py-jsonschema.
* Tweak to force Maestro to use jsonschema@3.2.0:
* Correction of whitespace (flake8 error).
* Merges importlib's Python version conditons
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add new versions of spfft
* Extend CudaPackage and use virtual fftw package
Co-authored-by: Simon Pintarelli <simon.pintarelli@cscs.ch>
* Add CUDA 11 compatibility note
* Depend on older cuda <= 10 for spfft <= 0.9.11
Co-authored-by: Simon Pintarelli <simon.pintarelli@cscs.ch>
* introduce logic for boost+context dependency and generic_context variant
* fix OTF2 instrumentation minor problem
* default coroutine impl depends on platform
* fix flake8
* add reference to ~generic_coroutines conflict info
* Update var/spack/repos/builtin/packages/hpx/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Octopus: Add support for version 10.0.
Fix compilation when using the MKL as a provider for BLAS/LAPACK. Octopus will now detect that the MKL also provides the FFTW API and will refuse to compile when both the FFTW library and the MKL are given to the configure script.
* Octopus: Add supported version range for libxc.
* berkeley-db: add version 18.1.40, update build options in package
* combine adamjstewart's changes
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* [kassiopeia] New package
* [kassiopeia] Remove master branch, update dependencies
* Update var/spack/repos/builtin/packages/kassiopeia/package.py
Unable to test since I do not have a license to intel-parallel-studio, but I see no reason why it would not work if.
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* [kassiopeia] depends_on mpi
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* [kassiopeia] cmake_args with self.spec.satisfies and elses
* [kassiopeia] args.extend -> args.append
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* h5py: explicitly specify version
hdf5@1.10.5 on Cray is wrongly detected as 1.8.4.
* Update var/spack/repos/builtin/packages/py-h5py/package.py
Thanks. Also had this first, then CI was complaining about line length ...
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update LBANN, Hydrogen, Aluminum to inherit CudaPackage
* Update CMake constraints: LBANN, Hydrogen, and Aluminum now require
cmake@3.16.0: (better support for pthreads with nvcc)
* Aluminum: add variants for host-enabled MPI and RMA features in a
MPI-GPU RDMA-enabled library
* NCCL: add versions 2.7.5-1, 2.7.6-1, and 2.7.8-1
* Hydrogen: add version 1.4.0
* LBANN: add versions 0.99 and 0.100
* Aluminum: add versions 0.4.0 and 0.5.0
* new package(s): py-gql
and related dependencies:
py-aiohttp
py-async-timeout
py-graphql-core
py-idna-ssl
py-multidict
py-websockets
py-yarl
new versions:
py-requests
* fixes
Co-authored-by: Andrew W Elble <aweits@skl-a-00.rc.rit.edu>
* NWChem 7.0.0
* add python2 for 6.8.1. removed 6.8 https://github.com/spack/spack/pull/17779#discussion_r462700413
* nwchem 6.8.1 breaks with gcc 10 and later
* restored extra python bits for version 6.8.1. add env. definition of basis libraries
* changes for flake8
* url fixed
* prevent 6.8.1 being compiled with gcc 10
* Ferret: Add missing dependency with curl.
* Ferret: Don't force using the static version of libgfortran.
* Ferret: Ensure Spack's compiler wrappers are used.
This allows properly setting the rpaths.
* Ferret: Add support for versions 7.3 to 7.6.
* Ferret: Add a variant to install Ferret standard datasets.
* Ferret: Define some useful runtime environnement variables.
* Ferret: Fix flake8.
Also add myself as a maintainer as suggested by @alalazo.
As discussed in issue #17638, wherein kahip fails to build when
scons is dependent on python@3.
This converts the print statements in various SConstruct files
into python3 friendly print functions.
I found most of the affected SConstruct files in both @2.00 and
the later versions I found on web, but some files were only in @2.00.
I split the patches into two files for that reason, but have not
tried the later versions.
* LAMMPS: Use LATTE 1.2.2 starting with version 20200602.
Version 20200602 and upper requires Latte 1.2.2. This caused the internal Latte distribution to be used instead of the Latte install provided by Spack.
* LAMMPS: Add new versions 20200630 and 20200721.
* dcmtk: fixed type error
* Update var/spack/repos/builtin/packages/dcmtk/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* New package: IDL
* Update var/spack/repos/builtin/packages/idl/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/idl/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* added license header and changed url_for_version to just url
* removed unused imports, addressed comments
* removed trailing whitespace on line 14
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
During configure lhapdf5 searches for python. On one system
I tested on (ubuntu 19.10) it finds a system installed python3
and fails to create the python extension.
Variant named to make explicit that this is only a python2 extension.
* update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel-studio, pin, tbb and makes url parameter consistent and always use single quote.
* Fixes a typo with one of the sha256 checksum..
* Adds version entries for new versions of Intel packages.
* Adds hashes for new versions of Intel packages.
* Adds missing hash of Intel compiler.
* Adds the newest version of Intel MPI 2019.8.
* Fixes hash for intel-parallel-studio and intel-tbb.
* Fixes version number of Intel MPI.
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
* openfoam: use MPI 'headers' property (fixes#17730)
* openfoam: +spdp variant, usable for OpenFOAM 1906 and later
in contrast to +float32, which uses single-precision throughout, +spdp
uses the following:
- single-precision for most internals
- double-precision for linear solver
* openfoam: add m4 as build dependency
* scotch: update to 6.0.9 released Oct 2019
Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
Libunwind already builds a shared library. The +pic variant adds the
compiler pic flag to the static archive so that it can be linked into
another shared library.
