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Author SHA1 Message Date
Adam J. Stewart
294e6f80a0 py-rasterio: add v1.3.4 (#33961) 2022-11-17 15:23:26 +01:00
Harmen Stoppels
cc2d0eade6 docs: fix typo in multiple build systems (#33965) 2022-11-17 15:20:10 +01:00
Harmen Stoppels
f00e411287 relocate.py: small refactor for file_is_relocatable (#33967) 2022-11-17 13:21:27 +01:00
Massimiliano Culpo
da0a6280ac Remove deprecated subcommands from "spack bootstrap" (#33964) 
These commands are slated for removal in v0.20
 2022-11-17 12:42:57 +01:00
Ashwin Kumar
6ee6844473 Octopus : Separate serial and MPI dependencies (#33836) 
* replace mpi as a variant instead of dependency 
* separate serial and MPI dependencies
* configure args depending on serial or mpi variant
* reformat with black
 2022-11-17 04:34:03 -07:00
Adam J. Stewart
69822b0d82 py-torchmetrics: add v0.10.3 (#33962) 2022-11-17 11:18:57 +01:00
Michael Kuhn
93eecae0c3 Add sgid notice when running on AFS (#30247) 2022-11-17 09:17:41 +01:00
Massimiliano Culpo
61f5d85525 Python: fix bug detection, trying to access self (#33955) 
Typo introduced in #33847
 2022-11-17 08:38:49 +01:00
Ben Boeckel
a90e86de75 zlib, openssl: return to http URLs (#33324) 
In #3113, `https` was removed to ensure that `curl` can be bootstrapped
without SSL being present. This was lost in #25672 which aimed to use
`https` where possible.

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
 2022-11-16 22:25:55 -07:00
Stephen Sachs
7247a493ab [xz] icc does not support attribute __symver__ (#33839) 
xz have added attribute __symver__ for compilers that identify as GCC>=10.0 via
__GNUC__. Intels `icc` sets __GNUC__ but currently does not support this
attribute:
https://community.intel.com/t5/Intel-C-Compiler/symver-not-supported/m-p/1429028/emcs_t/S2h8ZW1haWx8dG9waWNfc3Vic2NyaXB0aW9ufExBQVRWMjIyUFFZTlZTfDE0MjkwMjh8U1VCU0NSSVBUSU9OU3xoSw#M40459
 2022-11-16 20:06:41 -07:00
Sergey Kosukhin
cd8ec60ae9 serialbox: update patch to handle UTF-8 conversion errors (#33317) 2022-11-16 20:06:28 -07:00
Manuela Kuhn
fe597dfb0c py-jupyter-server: add 1.21.0 (#33310) 2022-11-16 20:02:20 -07:00
Brian Vanderwende
c721aab006 lib/spack/spack/store.py: Fix #28170 for padding relocation (#33122) 2022-11-17 03:56:00 +01:00
Manuela Kuhn
6a08e9ed08 py-jupyterlab: add 3.4.8 (#33308) 2022-11-16 19:53:59 -07:00
Christian Kniep
7637efb363 blast-plus: update to 2.13.0 and add cpio as build dependency (#33187) 2022-11-17 03:42:25 +01:00
Sebastian Grabowski
b31f1b0353 * ninja: Set min. required version of re2c dependency, fixes #33127 (#33128) 
Reviewed-by: haampie, bernhardkaindl
 2022-11-17 03:28:06 +01:00
Jonathon Anderson
497682260f gettext: On ppc64le, for older versions, use system cdefs.h (#33411) 
Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
 2022-11-17 02:55:02 +01:00
Massimiliano Culpo
e47beceb8a Clean unit-test workflow file (#33945) 
Delete statements related to Python 2.7, and avoid installing
patchelf since now we can bootstrap it.
 2022-11-16 23:28:49 +01:00
chenwany
067976f4b8 updated v2.11.8 (#33944) 2022-11-16 13:04:15 -08:00
Greg Becker
1263b5c444 initial implementation of slingshot detection (#33793) 2022-11-16 13:01:37 -08:00
psakievich
90f0a8eacc Upstreams: add canonicalize path (#33946) 2022-11-16 14:37:32 -06:00
John W. Parent
61a7420c94 Windows bootstrapping: remove unneeded call to add dll to PATH (#33622) 
#32942 fixed bootstrapping on Windows by having the core Spack
code explicitly add the Clingo package bin/ directory as a
DLL path.

Since then, #33400 has been merged, which ensures that the Python
module installed by the Spack `clingo` package can find the DLLs
in bin/.

Note that this only works for Spack instances which have been
bootstrapped after #33400: for installations bootstrapped before
then, you will need to run `spack clean -b` (this would only
be needed for Spack instances running on Windows).
 2022-11-16 12:04:57 -08:00
Stephen Sachs
39a1f1462b SIP build system: fix "python not defined in builder" (#33906) 
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
 2022-11-16 13:36:25 -06:00
Wouter Deconinck
6de5d8e68c qt: new version 5.15.6 and 5.15.7 (#33933) 2022-11-16 11:35:01 -07:00
Robert Underwood
b0f2523350 add sz3 and mdz smoke test for inclusion in e4s (#33864) 
* add sz3 and mdz smoke test

Co-authored-by: Robert Underwood <runderwood@anl.gov>
 2022-11-16 10:05:43 -08:00
snehring
bc8cc39871 py-isal: use external libisal (#33932) 
* py-isal: adding some missing build deps

* py-isal: use external libisal
 2022-11-16 10:58:15 -07:00
Pat Riehecky
b36a8f4f2e New Package: rarpd (#28686) 2022-11-16 08:29:58 -07:00
Harmen Stoppels
0a952f8b7b docs updates for spack env depfile (#33937) 2022-11-16 15:47:31 +01:00
Matthias Wolf
26a0384171 neovim: fix build dependencies (#33935) 
Buildin neovim@0.8.0 complains (for me) about Lua's lpeg and mpack
packages not being available at build time. Removing the link-only
setting in the dependencies for these two packages fixes the build for
me.
 2022-11-16 07:30:08 -07:00
Harmen Stoppels
d18cccf7c5 spack env depfile in Gitlab CI should use install-deps/pkg-version-hash target (#33936) 2022-11-16 14:02:56 +00:00
Kevin Broch
fbe6b4b486 Change code suggestions to output black formatter compliant code (#33931) 2022-11-16 12:08:20 +01:00
Nathalie Furmento
5fe08a5647 starpu: add v1.3.10 (#33934) 2022-11-16 12:04:31 +01:00
Vanessasaurus
ac2fc4f271 Automated deployment to update package flux-core 2022-11-09 (#33780) 
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
 2022-11-16 11:58:51 +01:00
Adam J. Stewart
93430496e2 Getting Started: Python 2 is no longer supported (#33927) 2022-11-16 08:36:49 +01:00
Michael Kuhn
901b31a7aa docs: fix typo (#33926) 2022-11-15 16:06:12 -08:00
Garrett Morrison
0cec2d3110 zfp: update for version 1.0.0 (#33452) 
* zfp: updates and many fixes for version 1.0.0

Co-authored-by: Bernhard Kaindl <43588962+bernhardkaindl@users.noreply.github.com>
 2022-11-15 16:21:57 -07:00
Satish Balay
40e4884e8b xsdk: add version @0.8.0 (#33794) 
- enable sundials+magma+ginkgo
- enable dealii+sundials
- disable dealii~cgal due to build errors
- enable petsc+rocm
- enable slepc+cuda+rocm
- enable strumpack+cuda+slate
- enable slate build with non-gcc compilers
- enable pumi+shared
- enable mfem+shared
- enable ginkgo+mpi
- add hiop
- and exago
  - use exago~ipopt due to mumps~mpi conflict with mpi.h)
  - add raja variant [used by exago/hiop]
    ~raja builds exago in pflow-only mode - i.e exago~hiop~ipopt~python~cuda ^hiop~cuda [Default on MacOS]

Co-authored-by: Cody Balos <balos1@llnl.gov>
 2022-11-15 16:52:58 -06:00
Jean-Luc Fattebert
f18425a51f Update BML versions list in package.py (#33920) 
* Update BML versions list in package.py
* Update package.py
 2022-11-15 14:08:10 -08:00
Massimiliano Culpo
472893c5c4 Run Python 3.6 unit tests on ubuntu-20.04 (#33918) 2022-11-15 22:33:11 +01:00
SXS Bot
289bbf74f6 spectre: add v2022.11.15 (#33921) 
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
 2022-11-15 13:05:02 -08:00
Harmen Stoppels
a0182c069f Show time per phase (#33874) 2022-11-15 21:10:07 +01:00
Erik Schnetter
4ecb6ecaff meson: add new version 0.64.0 (#33880) 2022-11-15 12:42:11 -07:00
Saqib Khan
d5193f73d8 New Package: Prime95/Mprime (#33895) 
* New Package: Prime95/Mprime
* Fix trailing whitespaces in prime95
* Fix checksum for prime95

Signed-off-by: saqibkh <saqibkhan@utexas.edu>
 2022-11-15 11:39:02 -08:00
Brent Huisman
1aab5bb9f2 Add v0.8 to Arbor (#33916) 2022-11-15 12:57:29 -06:00
Erik Schnetter
8dda4ff60b nsimd: Update Python requirements (#33879) 
We need Python 3.0:3.9
 2022-11-15 10:05:14 -08:00
iarspider
0811f81a09 thepeg: make rivet dependency optional... (#33912) 
* thepeg: make rivet dependency optional...
* add "libs" variant, move compiler flags to flag_handler

Co-authored-by: iarspider <iarspider@users.noreply.github.com>
 2022-11-15 09:36:15 -08:00
Harmen Stoppels
af74680405 depfile: improve tab completion (#33773) 
This PR allows you to do:

```
spack env create -d .
spack -e . add python
spack -e . concretize
spack -e . env depfile -o Makefile

make in<tab>              # -> install
make install-<tab>        # -> install-deps/
make install-deps/py<tab> # -> install-deps/python-x.y.z-hash
make install/zl<tab>      # -> install/zlib-x.y.z-hash

make SP<tab>              # -> make SPACK
make SPACK_<tab>          # -> make SPACK_INSTALL_FLAGS=
```
 2022-11-15 18:03:17 +01:00
Harmen Stoppels
d1715c5fdf Fixup: start the timer before the phase (#33917) 2022-11-15 16:52:43 +01:00
Harmen Stoppels
b245f1ece1 Fix incorrect timer (#33900) 
Revamp the timer so we always have a designated begin and end.

Fix a bug where the phase timer was stopped before the phase started,
resulting in incorrect timing reports in timers.json.
 2022-11-15 16:33:47 +01:00
Harmen Stoppels
e10c47c53d glib: add missing libelf dep (#33894) 2022-11-15 07:18:10 -07:00