Commit Graph

37143 Commits

Author SHA1 Message Date
Thomas Madlener
722d401394 gaudi: Don't apply the patch if it has already landed upstream (#44180) 2024-05-16 17:15:39 +02:00
Howard Pritchard
e6f04d5ef9 py-matplotlib: qualify when to do a post install (#44191)
* py-matplotlib: qualify when to do a post install

Older versions of py-matplotlib don't seem to have some of the
files that the post install step is trying to install.
Looks like the files first appeared in 3.6.0 and later.

Signed-off-by: Howard Pritchard <hppritcha@gmail.com>

* Change install paths for older matplotlib

---------

Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-05-16 16:18:44 +02:00
Mosè Giordano
b8e3ecbf00 suite-sparse: improve setting of the libs property (#44214)
on some distros it is in lib64/
2024-05-16 11:07:18 +02:00
Todd Gamblin
d189387c24 bugfix: add arg to write_line_break() in spack_yaml (#42727)
`ruamel`'s `Emitter.write_line_break()` method takes an extra argument that we forgot to
implement in our custom emitter.
2024-05-15 19:25:06 -07:00
Andrew Lister
9e96ddc5ae CoinHSL: Support the Meson build system and add new release (#43610)
* Add maintainer and fix linting
* allow for fewer deps in archive
* use meson for archive packages
* Fix version spec and f-string
* fix blas dependency links
* Add new release to spack
* Fix checksums for latest release
2024-05-15 16:48:23 -06:00
dmagdavector
543bd189af iperf3: updated versions from 3.6 to 3.16 (#44152)
* Update version of iperf3 from 3.6 to 3.16

Spack currently only explicitly has version 3.6 of the iPerf3 package
(out of ESnet / LBNL). This makes the default the latest version of 3.16,
and adds some other versions (found in some Linux distros, for possible
compatibility purposes).

* iperf3: update to 3.17; update 3.6 hash for new url

* protobuf: update hash for patch needed when="@3.4:3.21"

* Revert "protobuf: update hash for patch needed when="@3.4:3.21""

This reverts commit 4d168d0b27.
2024-05-15 15:48:15 -06:00
John W. Parent
43291aa723 Cdash reporting timeout (#44213)
* Add timeout to cdash reporter PUT request

Add cdash timeout everywhere
Correct mock responder api

* Style

* brief doc
2024-05-15 15:41:51 -04:00
Alec Scott
d0589285f7 unmaintained pkgs: bump versions 2024-05-10 (#44131)
* unmaintained pkgs: bump versions 2024-05-10

* openblas: fix satisfies syntax

* pixman: add autotools dependencies

* [@spackbot] updating style on behalf of alecbcs

* pixman: revert

* chapel: revert changes in favor of other PR

* openblas: revert due to failing tests

* Address review feedback for flint, biobam2, and pango

* pango: add version comment about v2.0

* numactl: revert changes due to ppc4le bug

* flint: remote duplicate configure arg

Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>

* openvkl, rkcommon: remove commented maintainers template

* flint: fix style

---------

Co-authored-by: alecbcs <alecbcs@users.noreply.github.com>
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2024-05-15 11:04:52 -07:00
afzpatel
d079aaa083 enable tensorflow-2.14 and 2.16 for spack built ROCm (#44095)
* initial commit to enable tensorflow-2.14 for spack built ROCm

* fix style errors

* modify hipcc patch

* updates for rocm 6.1

* updates for tf-rocm-enhanced 2.16

* fix styling

* fix styling

* add patch for 2.16

* add patch for 2.16

* Update var/spack/repos/builtin/packages/py-tensorflow/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* update rocm enhanced version names

* changes for rocm-enhanced version name change

* fix styling

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-05-15 17:06:35 +02:00
Paolo
6c65977e0d Fix gromacs installation with SVE. Issue 44062 (#44183)
* Fix gromacs installation with SVE. Issue 44062

* [@spackbot] updating style on behalf of paolotricerri

* Remove `neoverse_n2` target

We have removed the neoverse_n2 target as its detection is more involved
compared to neoverse_v*.
2024-05-15 07:22:47 -06:00
Carlos Bederián
1b5d786cf5 gromacs: add 2024.2, 2023.5 (#44197) 2024-05-15 07:21:55 -06:00
Ben Morgan
4cf00645bd VecGeom: new version 1.2.8 (#44179) 2024-05-15 07:50:48 -04:00
Jon Rood
e9149cfc3c nalu-wind: fix mistake (#44188) 2024-05-14 23:13:13 -06:00
Jon Rood
a5c8111076 exawind: updates to package to allow mixed device (#44159)
* exawind: updates to package to allow mixed device

* Style.

* Remove ninja variants.

* Add conflict for amr-wind+hypre with mixed device.

* Relax amr-wind~hypre requirement.

* Move runtime variables to nalu-wind.

* Update suggestions.

* Remove umpire.
2024-05-14 12:26:07 -06:00
Alec Scott
c3576f712d pkg-config: support apple-clang@15: (#44007) 2024-05-14 17:24:36 +02:00
Alec Scott
410e6a59b7 rust: fix v1.78.0 instructions (#44127) 2024-05-14 08:14:34 -07:00
Carlos Bederián
bd2b2fb75a python: add 3.10.14, 3.9.19, 3.8.19 (#44162) 2024-05-14 17:03:45 +02:00
Zachary Newell
7ae318efd0 Added NCCL version 2.21.5-1 (#44158) 2024-05-14 03:34:21 -06:00
Derek Ryan Strong
73e9d56647 Update bash 5.2 patches (#44172) 2024-05-14 09:08:39 +02:00
Derek Ryan Strong
f87a752b63 Add zsh 5.8.1 and 5.9 (#44173) 2024-05-14 09:08:08 +02:00
Derek Ryan Strong
ae2fec30c3 Add newer fish versions (#44174) 2024-05-14 09:07:49 +02:00
Derek Ryan Strong
1af5564cbe Add file 5.45 (#44175) 2024-05-14 09:07:25 +02:00
Derek Ryan Strong
a8f057a701 Add man-db 2.12.0 and 2.12.1 (#44176) 2024-05-14 09:07:10 +02:00
Michael B Kuhn
7f3dd38ccc amr-wind: add latest versions and correct waves2amr details (#44099)
* add latest versions and correct waves2amr details

* update commit associated with v2.1.0
2024-05-13 14:21:25 -06:00
Adam J. Stewart
8e9adefcd5 ML CI: update image (#43751)
* ML CI: update image

* Use main branch

* Use tagged version
2024-05-13 21:43:52 +02:00
jdomke
d276f9700f fujitsu-mpi package: help CMake find wrappers (#43979)
Set MPI_C_COMPILER etc. env vars when building with fujitsu-mpi, which
override CMake logic. Without using these variables to explicitly
request the Fujitsu MPI wrappers, the builtin CMake logic is unwilling
to use these wrappers unless the Fujitsu compiler is used, but they
should be used for %clang as well.

This avoids patching CMake module files like in #16864, primarily to
avoid the possibility of altering behavior for specs that do not use
%fj or ^fujitsu-mpi.
2024-05-13 11:15:45 -07:00
Harmen Stoppels
4f111659ec glibc: detect from "Free Software Foundation" not "gnu" (#44154)
which should be more generic
2024-05-13 20:11:27 +02:00
Dave Keeshan
eaf330f2a8 yosys: add v0.41 (#44153) 2024-05-13 09:40:42 -07:00
Julien Cortial
cdaeb74dc7 cdt: Add version 1.4.1 (#44155) 2024-05-13 09:38:25 -07:00
Alberto Sartori
fbaac46604 justbuild: add version 1.3.0 (#44148) 2024-05-13 09:35:29 -07:00
Jon Rood
7f6210ee90 nalu-wind: updates (#44046) 2024-05-13 10:28:24 -06:00
Wouter Deconinck
63f6e6079a gaudi: upstream patch when @38.1 for missing #include <list> (#44121)
* gaudi: upstream patch when @38.1 for missing #include <list>

* gaudi: apply list patch for all versions
2024-05-13 07:37:31 -06:00
Greg Becker
d4fd6caae0 spack uninstall: improve error message for dependent environment (#44149) 2024-05-13 14:58:13 +02:00
Mikael Simberg
fd3c18b6fd whip: Add 0.3.0 (#44146)
Co-authored-by: Mikael Simberg <simbergm@cscs.ch>
2024-05-13 03:09:32 -06:00
Adam J. Stewart
725f427f25 spack checksum: do not add expand=False to wheels (#44118) 2024-05-13 10:01:47 +02:00
Paul R. C. Kent
32b3e91ef7 llvm: add 18.1.5, 18.1.4 (#44123) 2024-05-12 16:28:32 -07:00
bk
b7e4602268 R: common package updates for 4.4.0 (#44088)
* r-ggplot2: v3.5.1, r-haven: v2.5.4, r-jsonlite: v1.8.8, r-pkgload: v1.3.4, r-vctrs: v0.6.5

* r-scales: v1.3.0
2024-05-12 10:49:38 -07:00
Stephen Sachs
4a98d4db93 Add applications to aws-pcluster-* stacks (#43901)
* Add openfoam to aws-pcluster-neoverse_v1 stack

* Add more apps to aws-pcluster-x86_64_v4 stack

* Remove WRF while hdf5 cannot build in buildcache at the moment

* Update comment

* Add more apps for aws-pcluster-neoverse_v1 stack

* Remove apps that currently do not build

* Disable those packages that won't build

* Modify syntax such that correct cflags are used

* Changing syntax again to what works with other packages

* Fix overriding packages.yaml entry for gettext

* Use new `prefer` and `require:when` clauses to clarify intent

* Use newer spack version to install intel compiler

This removes the need for patches and makes sure the `prefer` directives in
`package.yaml` are understood.

* `prefer` not strong enough, need to set compilers

* Revert "Use newer spack version to install intel compiler"

This reverts commit ecb25a192c.

Cannot update the spack version to install intel compiler as this changes the
compiler hash but not the version. This leads to incompatible compiler paths. If
we update this spack version in the future make sure the compiler version also updates.

Tested-by: Stephen Sachs <stesachs@amazon.com>

* Remove `prefer` clause as it is not strong enough for our needs

This way we can safely go back to installing the intel compiler with an older
spack version.

* Prefer gcc or oneapi to build gettext

* Pin gettext version compatible with system glibc-headers

* relax gettext version requirement to enable later versions

* oneapi cannot build older gettext version
2024-05-12 10:48:02 -07:00
Juan Miguel Carceller
9d6bf373be whizard: Add version 3.1.4 (#43045)
* whizard: Add a patch to fix builds with pythia8 >= 8.310

* Add whizard 3.1.4 and update accordingly

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-05-12 10:44:56 -07:00
Alex Richert
cff35c4987 octave: use pcre2 for @8: (#42636)
* octave: use pcre2 for @8:

* Add 'pcre2' variant to octave to control pcre vs. pcre2

* Update var/spack/repos/builtin/packages/octave/package.py

Co-authored-by: Alec Scott <hi@alecbcs.com>

---------

Co-authored-by: Alex Richert <alexander.richert@noaa.gov>
Co-authored-by: Alec Scott <hi@alecbcs.com>
2024-05-12 10:44:31 -07:00
Juan Miguel Carceller
d594f84b8f fastjet: Add a cxxstd variant (#44072)
* fastjet: Add a cxxstd variant

* Use f-strings

* Add multi=False

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-05-12 10:42:56 -07:00
Wouter Deconinck
f8f01c336c clang: support cxx20_flag and cxx23_flag (#43438)
* clang: support cxx20_flag and cxx23_flag

* clang: coverage test cxx{}_flag and c{}_flag additions
2024-05-12 07:45:59 -07:00
Todd Gamblin
12e3665df3 Bump version on develop to v0.23dev0 (#44137) develop-2024-05-12 2024-05-11 18:01:50 +02:00
Todd Gamblin
fa4778b9fc changelog: add changes form 0.21.1 and 0.21.2 (#44136)
These changes were added to the release branch but did not make it onto `develop`.
2024-05-11 17:45:14 +02:00
Harmen Stoppels
66d297d420 oci: improve default_retry (#44132)
Apparently urllib can throw a range of different exceptions:

1. HTTPError
2. URLError with e.reason set to the actual exception
3. TimeoutError from getresponse, which is not wrapped
2024-05-11 15:43:32 +02:00
James Taliaferro
56251c11f3 qpdf: new package (#44066)
* New package: qpdf

* Update var/spack/repos/builtin/packages/qpdf/package.py

Co-authored-by: Alec Scott <hi@alecbcs.com>

* Fix format of cmake_args

---------

Co-authored-by: Alec Scott <hi@alecbcs.com>
2024-05-10 14:32:57 -06:00
James Smillie
40bf9a179b New package: py-nuitka (#44079) 2024-05-10 12:07:02 -07:00
John W. Parent
095aba0b9f Buildcache/ensure symlinks proper prefix (#43851)
* archive: relative links only

Ensure all links written into tarfiles generated from Spack prefixes do not contain symlinks pointing outside the prefix

* binary_distribution: limit extraction to prefix

Ensure files extracted from spackballs are not links pointing outside of the prefix

* Ensure rpaths are properly set on Windows

* hard error on extraction of absolute links

* refactor for non link-modifying approach

* Restore tarball extraction to original impl

* use custom readlink

* cleanup symlink module

* make lstrip
2024-05-10 13:00:40 -05:00
John W. Parent
4270136598 Windows: Non config changes to support Gitlab CI (#43965)
* Quote python for shlex

* Remove python path quoting patch

* spack env: Allow `C` "protocol" for config_path

When running spack on windows, a path beginning with `C://...` is a valid path.

* Remove makefile from ci rebuild

* GPG use llnl.util.filesystem.getuid

* Cleanup process_command

* Remove unused lines

* Fix tyop in encode_path

* Double quote arguments

* Cleanup process_command

* Pass cdash args with =

* Escape parens in CMD script

* escape parens doesn't only apply to paths

* Install deps

* sfn prefix

* use sfn with libxml2

* Add hash to dep install

* WIP

* REview

* Changes missed in prior review commit

* Style

* Ensure we handle Windows paths with config scopes

* clarify docstring

* No more MAKE_COMMAND

* syntax cleanup

* Actually correct is_path_url

* Correct call

* raise on other errors

* url2path behaves differently on unix

* Ensure proper quoting

* actually prepend slash in slash_hash

---------

Co-authored-by: Ryan Krattiger <ryan.krattiger@kitware.com>
Co-authored-by: Mike VanDenburgh <michael.vandenburgh@kitware.com>
2024-05-10 13:00:13 -05:00
Juan Miguel Carceller
f73d7d2dce dd4hep: cleanup recipe, remove deprecated versions and patches (#44110)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-05-10 07:40:38 -07:00