Commit Graph

34439 Commits

Author SHA1 Message Date
Alec Scott
7988d8c67d glab: add v1.33.0 (#40177) 2023-09-24 15:53:01 +02:00
Alec Scott
658a3f2fdb hugo: add v0.118.2 (#40178) 2023-09-24 15:52:42 +02:00
Rocco Meli
582f0289af Add mda-xdrlib and update pyedr and panedr (#39912)
* ensure umpire~cuda~rocm when ~cuda~rocm

* Add mda-xdrlib and update pyedr and panedr

* Update var/spack/repos/builtin/packages/py-mda-xdrlib/package.py

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>

* code review

* fix python pin, conflated with py-tomli

---------

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
2023-09-24 02:07:59 -06:00
eugeneswalker
95b737d923 trilinos +shylu: patch to resolve trilinos issue #12048 (#40169)
* trilinos +shylu: patch to resolve trilinos issue #12048

* e4s ci: build xyce ^trilinos+shylu

---------

Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2023-09-24 16:28:03 +09:00
Adam J. Stewart
d7e9a13f53 protobuf: add v4.24.3 (#40152) develop-2023-09-24 2023-09-23 20:04:10 +02:00
Tom Payerle
25e45f9f07 py-tinyarray: add version 1.2.4, needed for python@3.10 (#40171)
* py-tinyarray: add version 1.2.4, needed for python@3.10

Added @1.2.4
Require @1.2.4 when using python@3.10:

* py-tinyarray: format fix
2023-09-23 08:57:46 -05:00
Cameron Smith
38cc51ec36 pumi: add version 2.2.8 (#40143) 2023-09-22 14:38:46 -07:00
Massimiliano Culpo
5c10c29923 Pin the version of tools used in CI, have dependabot manage their version (#40066) 2023-09-22 10:33:01 -07:00
eugeneswalker
daf95227bf e4s cray rhel stack: expand to full spec list (#40111)
* e4s cray rhel stack: expand to full spec list

* comment out gasnet; require %gcc for unzip

* require openblas@0.3.20 to get around %cce error; follow up with issue report

* comment out failing specs;

* comment out axom and xyce due to errors

* improve clarity of failing specs
2023-09-22 16:04:20 +00:00
Adam J. Stewart
480a5e0848 py-pyzmq: fix order of decorators (#40157) 2023-09-22 17:20:56 +02:00
Satish Balay
783e253f7d llvm: add version 17.0.1 (#40108) 2023-09-22 14:41:23 +02:00
Harmen Stoppels
716196930a Remove distutils dependency in Spack (#40153)
* msvc.py: don't import distutils

Introduced in #27021, makes Spack forward incompatible with Python.

The module was already deprecated at the time of the PR.

* update spack package
2023-09-22 13:04:58 +02:00
Adam J. Stewart
f42402129a py-matplotlib: add v3.7.3 (#39961) 2023-09-22 11:23:57 +02:00
Adam J. Stewart
419878f035 Add support for macOS Sonoma (#40115) 2023-09-22 04:21:26 -05:00
Harmen Stoppels
32927fd1c1 py-pyzmq: force recythonize of older versions (#40151) 2023-09-22 03:18:34 -06:00
Harmen Stoppels
092a5a8d75 py-gpy: re-cythonize & drop python upperbound (#40089)
* py-gpy: drop cython induced python upperbound

* py-gpy: bump scipy

* py-fn-py: python bounds for old version, new version w/o

* py-statsmodels: force recythonization

* py-gpy: clarifying comment about cython build type
2023-09-22 04:18:01 -05:00
Adam J. Stewart
f082b19058 py-pyproj: add v3.6.1 (#40128) 2023-09-22 03:29:37 -05:00
Harmen Stoppels
eb7e26006f py-hpbandster: use build/run deps instead of build (#40102) 2023-09-22 02:18:39 -06:00
Adam J. Stewart
2d3d9640dc py-pandas: add v2.1.1 (#40127) 2023-09-22 10:16:01 +02:00
Adam J. Stewart
f95080393a libzmq: fix build with Apple Clang 15.0.0 (#40116) 2023-09-22 10:14:43 +02:00
Adam J. Stewart
0b8203940a OpenBLAS: add v0.3.24 (#40132)
Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-09-22 08:58:23 +02:00
Adam J. Stewart
3bd7859e7f py-scikit-learn: add v1.3.1 (#40126) 2023-09-22 08:39:38 +02:00
eugeneswalker
599b612edf add met v11.1.0 (#40138) 2023-09-22 08:35:10 +02:00
eugeneswalker
6f9126d738 add metplus v5.1.0 (#40139) 2023-09-22 08:30:38 +02:00
eugeneswalker
59399ab1f8 add scotch v7.0.4 (#40140) 2023-09-22 08:30:22 +02:00
Lydéric Debusschère
b67f619448 py-aiofiles: Add version 0.7.0 required by py-cylc-flow (#39987)
* py-aiofiles: Add version 0.7.0 required by py-cylc-flow

* py-aiofiles: update from review

* depends on py-setuptools before 0.6
* depends on py-poetry-core after 0.7

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>

* py-aiofiles: Taking reviewing into account; add a upper version constraint for Python.

* py-aiofiles: update from review, set lower version of python

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-09-22 00:29:03 -05:00
eugeneswalker
2755706115 Revert "e4s-cray: drop in ci as there are no runners (#40122)" (#40144)
This reverts commit bd8d0324a9.
2023-09-21 22:38:26 -06:00
Thiago Genez
43ed8a12b7 openssh: Fix segfault on x86_64-darwin (#40044)
Import patches from homebrew
2023-09-22 01:41:22 +02:00
Alex Richert
3f5b4a4907 Update grib-util package.py (#40120) 2023-09-21 14:15:06 -07:00
Garth N. Wells
cd16478aba py-fenics-dolfinx: add version upper bound for Python dependency (#40125)
* py-fenics-dolfinx: add upper bound on Python version

* Small fix

* Update var/spack/repos/builtin/packages/py-fenics-dolfinx/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-09-21 13:17:45 -06:00
Rocco Meli
aa87c747f9 Add missing platform in Charm++ (#40051)
Add missing `linux` platform in Charm++ when building for `arm8`.
2023-09-21 20:31:17 +02:00
Steven R. Brandt
9210b19398 lorene: add C++ headers to the install (#39909) 2023-09-21 20:27:23 +02:00
George Young
4d156b9e6b relion: add 4.0.1, fix build on Rocky8 (#40074)
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-21 20:24:03 +02:00
Jonas Thies
56df8b61a2 phist: fix compatibility with python@3.11: (#40082) 2023-09-21 20:21:35 +02:00
Anton Kozhevnikov
170867e38a SIRIUS: remove old versions (#40105) 2023-09-21 20:18:58 +02:00
Wileam Y. Phan
5ca9fd6c82 Fix false detection of llvm-amdgpu as llvm and llvm-doe (#40113) 2023-09-21 20:15:20 +02:00
Robert Underwood
ef165c80b3 py-nanobind add cmake path (#40079)
* py-nanobind add cmake path

* fix style

---------

Co-authored-by: Robert Underwood <runderwood@anl.gov>
2023-09-21 13:15:02 -05:00
Lydéric Debusschère
6859694e8e [add] py-graphql-ws: new recipe, required by py-cylc-uiserver (#39991)
* [add] py-graphql-ws: new recipe, required by py-cylc-uiserver

* py-graphql-ws: remove constraint on version for python
2023-09-21 13:14:11 -05:00
John W. Parent
aeaca77630 Harden compiler detection against errors (#39736)
Fixes #39622

Add a timeout to compiler detection and allow Spack to proceed when
this timeout occurs.

In all cases, the timeout is 120 seconds: it is assumed any compiler
invocation we do for the purposes of verifying it would resolve in
that amount of time.

Also refine executables that are tested as being possible MSVC
instances, and limit where we try to detect MSVC. In more detail:

* Compiler detection should timeout after a certain period of time.
  Because compiler detection executes arbitrary executables on the
  system, we could encounter a program that just hangs, or even a
  compiler that hangs on a license key or similar. A timeout
  prevents this from hanging Spack.
* Prevents things like cl-.* from being detected as potential MSVC
  installs. cl is always just cl in all cases that Spack supports.
  Change the MSVC class to indicate this.
* Prevent compilers unsupported on certain platforms from being
  detected there (i.e. don't look for MSVC on systems other than
  Windows).

The first point alone is sufficient to address #39622, but the
next two reduce the likelihood of timeouts (which is useful since
those slow down the user even if they are survivable).
2023-09-21 10:42:12 -07:00
AMD Toolchain Support
2a9d1d444b aocl-sparse: use .libs instead of hard-coded value for library computation (#39868)
Co-authored-by: matooley <phil.tooley@amd.com>
2023-09-21 18:47:29 +02:00
Massimiliano Culpo
abad16c198 Restore virtuals normalization on edge construction (#40130)
Put back normalization of the "virtuals" input as a sorted tuple. 

Without this we might get edges that differ just for the order of 
virtuals, or that have lists, which are not hashable.

Add unit-tests to prevent regressions.
2023-09-21 17:02:34 +02:00
Massimiliano Culpo
4c0bc39054 Remove Python 3.6 from bootstrap tests on Ubuntu, add 3.11 (#40131) 2023-09-21 15:14:47 +02:00
Harmen Stoppels
501d322264 e4s: drop python 3.8 preference (#40123) 2023-09-21 15:07:21 +02:00
Manuela Kuhn
59fc09e93f py-versioneer: add 0.29 (#40076) 2023-09-21 07:22:20 -05:00
Harmen Stoppels
8bd54e2f8f cython: fix recythonize by default patch (#40096) 2023-09-21 07:09:47 -05:00
Sinan
bd8d121a23 package:pylint fix isort dependency versions (#40094)
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2023-09-21 06:43:44 -05:00
Lydéric Debusschère
2bd487988f [add] py-ansimarkup: new recipe required by py-cylc-flow (#39989)
* [add] py-ansimarkup: new recipe required by py-cylc-flow

* py-ansimarkup: remove version constraint on python, add version 2.1.0
2023-09-21 06:36:15 -05:00
Manuela Kuhn
452e56f467 py-vcrpy: add 5.1.0 (#40075) 2023-09-21 06:28:25 -05:00
Christian Glusa
62e94b0cb7 py-scikit-sparse: add 0.4.11, 0.4.12 (#40077) 2023-09-21 06:27:04 -05:00
Thomas Dickerson
5d331d4141 Bazel patch specs were too restrictive (#40084)
These patches should always be applied - the existing Bazel code is always wrong, working on some older compilers was a lucky fluke.
2023-09-21 05:27:11 -05:00