Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						fb219cd91c 
					 
					
						
						
							
							Add latest version of gnupg ( #13349 )  
						
						
						
						
					 
					
						2019-10-22 00:42:56 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						326db657da 
					 
					
						
						
							
							Add latest version of patchelf ( #13348 )  
						
						
						
						
					 
					
						2019-10-22 00:42:40 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						5e6dc7ab4b 
					 
					
						
						
							
							Add latest version of zstd ( #13340 )  
						
						... 
						
						
						
						* Add latest version of zstd
* setup_environment -> setup_build_environment 
						
						
					 
					
						2019-10-21 21:45:48 -05:00 
						 
				 
			
				
					
						
							
							
								Toyohisa Kameyama 
							
						 
					 
					
						
						
							
						
						98c0d59a0c 
					 
					
						
						
							
							sniffles: fix zlib header lookup directory. ( #13063 )  
						
						... 
						
						
						
						* sniffles: fix zlib header lookup directory.
* use bamtools and zlib to spack installed package.
* remove unneeded patch. 
						
						
					 
					
						2019-10-21 18:38:05 -05:00 
						 
				 
			
				
					
						
							
							
								noguchi-k 
							
						 
					 
					
						
						
							
						
						7b62b64b03 
					 
					
						
						
							
							elsi:add CMAKE Fortran MODDIR FLAG for Fujitsu compiler ( #13244 )  
						
						... 
						
						
						
						* add CMAKE Fortran MODDIR FLAG for Fujitsu compiler
* elsi:remove extra fix 
						
						
					 
					
						2019-10-21 18:28:38 -05:00 
						 
				 
			
				
					
						
							
							
								t-karatsu 
							
						 
					 
					
						
						
							
						
						0e3e1836ff 
					 
					
						
						
							
							arpack-ng: Fixed error that is not compatible with isnan. ( #13246 )  
						
						
						
						
					 
					
						2019-10-21 18:27:39 -05:00 
						 
				 
			
				
					
						
							
							
								t-karatsu 
							
						 
					 
					
						
						
							
						
						26141ad489 
					 
					
						
						
							
							bpp-core: Clarify 'isnan' function's namespace. ( #13260 )  
						
						
						
						
					 
					
						2019-10-21 18:24:10 -05:00 
						 
				 
			
				
					
						
							
							
								Michael Kuhn 
							
						 
					 
					
						
						
							
						
						edf56d8ac4 
					 
					
						
						
							
							qt: Fix build for newer versions ( #13262 )  
						
						... 
						
						
						
						For some reason, newer versions of qt fail to build because they cannot
find certain system libraries such as libatomic and libdl.
Leaving the qmake compiler set to gcc seems to fix the problem.
Fixes  #13221  
						
						
					 
					
						2019-10-21 18:23:03 -05:00 
						 
				 
			
				
					
						
							
							
								健美猞猁 
							
						 
					 
					
						
						
							
						
						26687988eb 
					 
					
						
						
							
							New package: Fl ( #12877 )  
						
						
						
						
					 
					
						2019-10-21 12:04:00 -07:00 
						 
				 
			
				
					
						
							
							
								Massimiliano Culpo 
							
						 
					 
					
						
						
							
						
						3d77ecd92e 
					 
					
						
						
							
							Bootstrap environment modules optimizing for generic architectures ( #13105 )  
						
						... 
						
						
						
						fixes  #13073 
Since #3206  was merged bootstrapping environment-modules was using the architecture of the current host or the best match supported by the default compiler. The former case is an issue since shell integration was looking for a spec targeted at the host microarchitecture.
1. Bootstrap an env modules targeted at generic architectures
2. Look for generic targets in shell integration scripts
3. Add a new entry in Travis to test shell integration 
					
						2019-10-21 11:20:05 -07:00 
						 
				 
			
				
					
						
							
							
								Massimiliano Culpo 
							
						 
					 
					
						
						
							
						
						498f448ef3 
					 
					
						
						
							
							microarchitectures: fix custom compiler versions ( #13222 )  
						
						... 
						
						
						
						Custom string versions for compilers were raising a ValueError on
conversion to int. This commit fixes the behavior by trying to detect
the underlying compiler version when in presence of a custom string
version.
* Refactor code that deals with custom versions for better readability
* Partition version components with a regex
* Fix semantic of custom compiler versions with a suffix
* clang@x.y-apple has been special-cased
* Add unit tests 
						
						
					 
					
						2019-10-21 10:24:57 -07:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						4ab63c17d5 
					 
					
						
						
							
							Fix Python 3.8 build on macOS ( #13338 )  
						
						
						
						
					 
					
						2019-10-21 11:21:47 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						4d99663ef9 
					 
					
						
						
							
							Add latest version of py-cffi ( #13322 )  
						
						... 
						
						
						
						* Add latest version of py-cffi
* setup_environment -> setup_build_environment 
						
						
					 
					
						2019-10-21 11:19:48 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						038f7b1b66 
					 
					
						
						
							
							Add latest version of py-numpy ( #13307 )  
						
						... 
						
						
						
						* Add latest version of py-numpy
* setup_environment -> setup_build_environment 
						
						
					 
					
						2019-10-21 11:19:05 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						72177b6e97 
					 
					
						
						
							
							Add latest version of py-tables ( #13291 )  
						
						... 
						
						
						
						* Add latest version of py-tables
* setup_environment -> setup_build_environment 
						
						
					 
					
						2019-10-21 11:17:52 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						5090071693 
					 
					
						
						
							
							Add latest version of py-torch ( #13290 )  
						
						... 
						
						
						
						* Add latest version of py-torch
* setup_environment -> setup_build_environment 
						
						
					 
					
						2019-10-21 11:17:15 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						f2d91f7e3c 
					 
					
						
						
							
							Use specific version of googletest for uriparser ( #13339 )  
						
						
						
						
					 
					
						2019-10-20 19:08:23 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						01e64886ac 
					 
					
						
						
							
							Tut cannot be built with Python 3.7+ ( #13341 )  
						
						
						
						
					 
					
						2019-10-20 19:08:04 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						7f2aacfffc 
					 
					
						
						
							
							Add latest version of proj ( #13337 )  
						
						
						
						
					 
					
						2019-10-20 17:56:37 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						030b2f8657 
					 
					
						
						
							
							Add missing zlib dependency to openjpeg ( #13336 )  
						
						
						
						
					 
					
						2019-10-20 17:06:43 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						0cfc88c7d7 
					 
					
						
						
							
							openblas: http -> https ( #13335 )  
						
						
						
						
					 
					
						2019-10-20 17:06:30 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						785d5d9ca3 
					 
					
						
						
							
							mapserver: http -> https ( #13334 )  
						
						
						
						
					 
					
						2019-10-20 16:31:55 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						4789ac956c 
					 
					
						
						
							
							liblas: http -> https ( #13331 )  
						
						
						
						
					 
					
						2019-10-20 15:51:35 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						529d1246f6 
					 
					
						
						
							
							libtiff: http -> https ( #13332 )  
						
						
						
						
					 
					
						2019-10-20 15:51:23 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						b56e46ece8 
					 
					
						
						
							
							libgeotiff: http -> https ( #13330 )  
						
						
						
						
					 
					
						2019-10-20 15:51:08 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						f1e595cb61 
					 
					
						
						
							
							Add latest version of libyaml ( #13333 )  
						
						
						
						
					 
					
						2019-10-20 15:50:48 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						04e999162d 
					 
					
						
						
							
							Add latest version of libgcrypt ( #13329 )  
						
						
						
						
					 
					
						2019-10-20 14:45:00 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						73c5a9c736 
					 
					
						
						
							
							Add latest version of googletest ( #13328 )  
						
						
						
						
					 
					
						2019-10-20 14:44:43 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						1673dc5aeb 
					 
					
						
						
							
							GEOS: http -> https ( #13327 )  
						
						
						
						
					 
					
						2019-10-20 14:44:28 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						c767444f88 
					 
					
						
						
							
							Add missing test dependency to py-alabaster ( #13325 )  
						
						
						
						
					 
					
						2019-10-20 14:44:14 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						a602ed873d 
					 
					
						
						
							
							Add latest version of py-typing ( #13287 )  
						
						
						
						
					 
					
						2019-10-20 13:18:02 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						d462749b59 
					 
					
						
						
							
							Add missing dependencies to py-apipkg ( #13324 )  
						
						
						
						
					 
					
						2019-10-20 13:17:44 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						32879df9d0 
					 
					
						
						
							
							Add latest version of py-babel ( #13323 )  
						
						
						
						
					 
					
						2019-10-20 13:17:28 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						ea90d2b88a 
					 
					
						
						
							
							Add latest version of py-chardet ( #13321 )  
						
						
						
						
					 
					
						2019-10-20 11:44:12 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						d2744a072b 
					 
					
						
						
							
							Add latest version of py-click ( #13320 )  
						
						
						
						
					 
					
						2019-10-20 11:43:56 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						41126d457f 
					 
					
						
						
							
							Add latest version of py-execnet ( #13317 )  
						
						
						
						
					 
					
						2019-10-20 11:21:59 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						1007a0f7e5 
					 
					
						
						
							
							Add latest version of py-decorator ( #13318 )  
						
						
						
						
					 
					
						2019-10-20 11:21:46 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						47831a95e1 
					 
					
						
						
							
							Add latest version of py-coverage ( #13319 )  
						
						
						
						
					 
					
						2019-10-20 11:21:32 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						b421c97110 
					 
					
						
						
							
							Add latest version of py-sphinxcontrib-websupport ( #13292 )  
						
						
						
						
					 
					
						2019-10-20 11:21:03 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						21d14a19f6 
					 
					
						
						
							
							Add latest version of py-sphinx ( #13293 )  
						
						
						
						
					 
					
						2019-10-20 11:20:46 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						2268dd9e8f 
					 
					
						
						
							
							Add latest version of py-snowballstemmer ( #13294 )  
						
						
						
						
					 
					
						2019-10-20 11:20:21 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						a2e7f0e9d2 
					 
					
						
						
							
							Add latest version of py-requests ( #13296 )  
						
						
						
						
					 
					
						2019-10-20 11:19:51 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						35362adb97 
					 
					
						
						
							
							Add latest version of py-pyyaml ( #13297 )  
						
						
						
						
					 
					
						2019-10-20 11:19:29 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						b76f1687fb 
					 
					
						
						
							
							Add latest version of py-pytest-xdist ( #13298 )  
						
						
						
						
					 
					
						2019-10-20 11:19:11 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						f832f12ca6 
					 
					
						
						
							
							Add latest version of py-pytest-runner ( #13299 )  
						
						
						
						
					 
					
						2019-10-20 11:18:55 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						3a2eeedf20 
					 
					
						
						
							
							Add latest version of py-pytest-mock ( #13300 )  
						
						
						
						
					 
					
						2019-10-20 11:18:39 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						4d7226e561 
					 
					
						
						
							
							Add latest version of py-pytest-httpbin ( #13301 )  
						
						
						
						
					 
					
						2019-10-20 11:18:04 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						63dd97f84e 
					 
					
						
						
							
							Add latest version of py-pytest-cov ( #13302 )  
						
						
						
						
					 
					
						2019-10-20 11:17:47 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						03b1af0d96 
					 
					
						
						
							
							Add latest version of py-pysocks ( #13303 )  
						
						
						
						
					 
					
						2019-10-20 11:17:27 -05:00 
						 
				 
			
				
					
						
							
							
								Adam J. Stewart 
							
						 
					 
					
						
						
							
						
						10065b325d 
					 
					
						
						
							
							Add latest version of py-pycparser ( #13304 )  
						
						
						
						
					 
					
						2019-10-20 11:17:11 -05:00