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Author SHA1 Message Date
Patrick Gartung
7c61d6d45f Update darshan package with mpi variant (#17717) 
* Update darshan package with nompi variant.

* Change variant to mpi and default to True
 2020-07-27 16:30:29 -05:00
Glenn Johnson
ff529e6dc1 r-adespatial: added new package (#17700) 
This PR adds the r-adesaptial package and several other new packages as
dependencies.

- r-adegraphics
- r-adephylo
- r-phylobase
- r-rncl
- r-rnexml
 2020-07-27 22:08:48 +02:00
Glenn Johnson
1c0abaa6eb r-dss: added new package at v2.36.0 with dependencies (#17661) 
This PR adds the r-dss package and the r-bsseq package, also new, as a
dependency. This includes the latest versions, which required updates to
the following dependencies:

- r-biocgenerics
- r-iranges
- r-s4vectors
- r-summarizedexperiment

Older versions of r-dss and r-bsseq are included as well to ensure
compatibility with older versions of the above dependencies.
 2020-07-27 20:51:27 +02:00
Seth R. Johnson
6c2749536e qt: fixed build with apple-clang (#17706) 2020-07-27 18:32:29 +02:00
Adam J. Stewart
4e4b8d8249 SciPy: added v1.5.2 (#17708) 2020-07-27 18:26:30 +02:00
ketsubouchi
032a52e006 scons: added support to Fujitsu compilers (#17710) 2020-07-27 18:23:53 +02:00
Hadrien G
e3cc7fc38c acts: added v0.29 (#17712) 2020-07-27 18:13:56 +02:00
Amjad Kotobi
f2e66730d0 openmpi: added lustre variant to openmpi (#17478) 2020-07-27 18:11:57 +02:00
Claire Guilbaud
0ebdfb3c37 sphinxcontrib-mermaid: new package at v0.4.0 (#17630) 2020-07-27 17:30:22 +02:00
Claire Guilbaud
fdb21e3e91 json logger: new package at v0.1.11 (#17628) 2020-07-27 16:32:56 +02:00
Claire Guilbaud
d66d430ab5 pygments pytest: new package at v1.2.0 (#17626) 2020-07-27 15:44:26 +02:00
Claire Guilbaud
bbfc9fd448 commonmark: new package at v0.9.0 (#17624) 2020-07-27 15:02:56 +02:00
Claire Guilbaud
e960e016af hieroglyph: new package at v1.0.0 (#17625) 2020-07-27 14:34:40 +02:00
Claire Guilbaud
074c0d622f python docs theme: new package at v2020.1 (#17627) 2020-07-27 12:53:04 +02:00
Claire Guilbaud
458a9f22da yolk3k: new package at v0.9 (#17635) 2020-07-27 12:48:58 +02:00
Claire Guilbaud
38730c6e68 sphinxcontrib trio: new package at v1.1.2 (#17631) 2020-07-27 12:14:12 +02:00
Claire Guilbaud
21a4edb1f3 sphinx gallery: new package at v0.7.0 (#17633) 2020-07-27 11:21:48 +02:00
Greg Becker
1ceec31422 add tutorial setup script to share/spack (#17705) 
* add tutorial setup script to share/spack

* Add check for Ubuntu 18, fix xvda check, fix apt-get errors
  - now works on t2.micro, t2.small, and m instances
  - apt-get needs retries around it to work

Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
 2020-07-27 01:17:58 -07:00
Todd Gamblin
d351946194 bugfix: don't redundantly print ChildErrors (#17709) 
A bug was introduced in #13100 where ChildErrors would be redundantly
printed when raised during a build. We should eventually revisit error
handling in builds and figure out what the right separation of
responsibilities is for distributed builds, but for now just skip
printing.

- [x] SpackErrors were designed to be printed by the forked process, not
      by the parent, so check if they've already been printed.
- [x] update tests
 2020-07-26 22:41:55 -07:00
Hadrien G
907f9e8411 [root] Add version 6.22 (#17459) 
* Add ROOT v6.22

* Hello xext my old friend...
 2020-07-26 10:08:53 -05:00
Patrick Gartung
66d59a90ed Rename sas static-analysis-package (#17695) 2020-07-24 17:07:01 -07:00
Nicholas Sly
5795f1d7da Add Totalview package (#17643) 
* Add initial totalview package.

* Add maintainer and helpful comments/information.

Co-authored-by: sly <sly@lanl.gov>
 2020-07-24 16:01:32 -07:00
t-nojiri
de6dfe3707 brltty (package): Add dependency on alsa-lib (#17616) 2020-07-24 15:56:34 -07:00
Jen Herting
148acfefcc py-gensim (package): add version 3.8.3; update dependency constraints (#17641) 2020-07-24 15:47:19 -07:00
Matthieu Dorier
b04f9e6774 MPICH (package): add optional support for argobots (#17678) 2020-07-24 15:42:00 -07:00
Christian Tacke
0e090064c4 singularity: Add version 3.6.1 2020-07-24 15:35:40 -07:00
vvolkl
be06803804 WHIZARD (package): add LCIO dependency, Openloops support (#17658) 
* WHIZARD: add versions 2.8.4 and 2.8.3
* New package: LCIO
* WHIZARD: add optional dependency on LCIO
* WHIZARD: add optional dependency on Openloops
* WHIZARD: allow building with either hepmc or hepmc3 dependencies
* Openloops: set process_lib_dir in configure
* Openloops: fix reference to variant
 2020-07-24 15:25:57 -07:00
Dennis Klein
0c63c94103 Relax architecture compatibility check (#15972) 
* Relax architecture compatibility check
* Add test coverage for the spack.abi module
 2020-07-24 10:00:55 -07:00
Andrew W Elble
99c46e8186 py-astropy: force re-cythonization of distributed .pyx files (#17567) 
astropy 3.2.1 fails to build with python 3.8.3 with
errors similar to this:

astropy/stats/_stats.c:318:11: error: too many arguments to function 'PyCode_New'
PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)

These are files that are generated by cython, but are included in the
tarball. Since there's apparently been an API change to PyCode_New, they will
need to be re-cythonized to compile correctly.
 2020-07-24 17:46:56 +02:00
Andrew W Elble
30d0347825 py-astropy-healpix: new package (#17568) 2020-07-24 17:39:45 +02:00
jdomke
ea50e4036e scorep: add libunwind dependency (#17580) 2020-07-24 17:30:50 +02:00
Adam J. Stewart
f73a3d35a8 spack help --spec: add compiler flags (#17584) 2020-07-24 17:27:43 +02:00
Dmitriy
02f14fd857 Initialize new_specs in Environment.remove() (#17592) 2020-07-24 17:18:40 +02:00
Harmen Stoppels
54bce00d4d Ensure that the stubs directory does not end up in the rpath (#17619) 2020-07-24 17:02:58 +02:00
Jon Rood
d3e4b14997 imagemagick: added dependency on libsm (#17577) 2020-07-24 17:00:25 +02:00
rempke
6bad79fca0 netlib-scalapack: fixed compilation with gcc 10 (#17647) 2020-07-24 16:53:32 +02:00
t-nojiri
13b3578d2f camx: change compile option for aarch64 (#17653) 2020-07-24 16:39:40 +02:00
Adam J. Stewart
08b5b56566 Qhull: add v2019.1 and v2020.1 (#17648) 
* Qhull: add v2019.1 and v2020.1
* Fix compilation with Apple Clang
 2020-07-24 16:16:53 +02:00
Adam J. Stewart
c1a2d66804 py-matplotlib: fix freetype and qhull dependencies (#17649) 2020-07-24 16:15:50 +02:00
Mark Olesen
c95c183bc4 openfoam: install META-INFO directory (#17673) 
Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
 2020-07-24 15:32:18 +02:00
Michael Kuhn
ed4b770e1a gcc: added v10.2.0 (#17681) 2020-07-24 15:24:12 +02:00
Federico Ficarelli
b8c3e3e16f hipsycl: switch to renamed default branch (#17689) 2020-07-24 15:19:59 +02:00
Rémi Lacroix
d9c1b62d38 CMake: added v3.18.0. (#17688) 2020-07-24 15:02:08 +02:00
ilbiondo
1aa1ddcd78 Updated elmer-fem recipe (#17687) 2020-07-24 09:47:09 +02:00
Adam J. Stewart
5fed42eae8 NumPy: add v1.19.1 2020-07-23 17:56:48 -07:00
ketsubouchi
1bbf8c0635 libgd (package): update configure to find jpeg dependency (#17655) 2020-07-23 17:55:34 -07:00
ketsubouchi
1fe07891e3 cctools (package): remove fstack-protector-all for Fujitsu compiler (#17656) 
The Fujitsu C compiler does not support the "fstack-protector-all" option.
 2020-07-23 17:49:37 -07:00
Tamara Dahlgren
a88675ffa9 XBraid (package): Switch to Github URL (#17670) 2020-07-23 17:27:25 -07:00
Gregory Becker
63db5499ee Merge tag 'v0.15.2' into develop 2020-07-23 16:55:22 -07:00
Gregory Becker
d6d839cd3e update changelog for 0.15.2 v0.15.2 2020-07-23 16:04:26 -07:00