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Author SHA1 Message Date
Andreas Baumbach
944be7a568 py-checkm-genome: fix backportsdependency (#23690) 2021-05-19 12:21:10 -07:00
Andreas Baumbach
e7b11c3098 cquery package: patch for gcc@10: (#23679) 2021-05-19 12:15:02 -07:00
Andreas Baumbach
f3c3fc7493 new package: py-batchspawner (#23688) 
* new package: py-batchspawner

Change-Id: I508bad7ba7f1fc32c2f6c0bfccf35d864cf47ced

* fixup

Change-Id: If183933ce40a8d12214ea24acc683cb046fcfbcb

* fix broken version

Change-Id: Ie4dd8d18465877cd8f9cb862112af37d85b1c30f

* fixup license

Change-Id: I51d92a6d229f6a6b56eea6e53c65ed31fe59f6af

* Update var/spack/repos/builtin/packages/py-batchspawner/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2021-05-19 14:12:53 -05:00
Andreas Baumbach
142c85fe22 py-git-review add version 1.27.0 (#23693) 
* py-git-review add version 1.27.0

Change-Id: Ibf2c52009b8d218561a385a592a3fa1266305212

* fixup dependencies and add version 2:

Change-Id: I94e974158afba61d102b04a78634cc276881783c

* fixup

Change-Id: I05d8aab0ddb8c7bc18460ba2da1372cd282a4353
 2021-05-19 14:08:17 -05:00
Andreas Baumbach
6d5cd24480 py-neo: add version 0.8.0 (#23717) 2021-05-19 11:58:42 -07:00
Andreas Baumbach
c666df5665 imagemagick: add missing pkg-config dependency (#23683) 2021-05-19 10:38:25 -07:00
Hadrien G
608d453c01 acts: add v8.2 and support master -> main branch naming switch (#23751) 2021-05-19 16:28:31 +00:00
Valentin Volkl
88192bfd4a Write junit-report to reports directory to allow installation from read-only spack (#20158) 2021-05-19 16:28:14 +00:00
Robert Mijakovic
9e3cb78fb1 singularity: add v3.7.3 (#23782) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
 2021-05-19 10:19:22 -06:00
Andreas Baumbach
46a1e0613e py-pytest: add v4.4.0 (#23723) 2021-05-19 14:13:34 +00:00
Andreas Baumbach
8cef30a181 py-regex: add older versions (#23724) 2021-05-19 14:08:34 +00:00
Andreas Baumbach
9759c7162e py-setuptools-scm: add v3.5.0 (#23726) 2021-05-19 14:01:41 +00:00
vsoch
f2b362b5b3 adding support to tag a build 
This will be useful to run multiple build experiments and organize by name

Signed-off-by: vsoch <vsoch@users.noreply.github.com>
 2021-05-19 07:01:18 -07:00
Andreas Baumbach
747e3cad1c scala: add v2.12.6 (#23731) 2021-05-19 07:58:22 -06:00
Andreas Baumbach
51e55381b9 py-slurm-pipeline: add v3.0.2 (#23727) 2021-05-19 13:53:13 +00:00
Andreas Baumbach
9b493e75a2 py-yapf: add v0.29.0 (#23729) 
Change-Id: I2c24cbeeee0be0088dfa60bd83628a0f05272d1c
 2021-05-19 13:48:52 +00:00
Robert Mijakovic
fbc20e0fe8 gdb: new version, 10.2 (#23754) 
* gdb: new version, 10.2

* gdb: applies patch to the newer releases

Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
 2021-05-19 15:37:08 +02:00
G-Ragghianti
f5c7ab7f6c slate: add v2021.05.02 (#23784) 2021-05-19 15:28:40 +02:00
Harmen Stoppels
81d583e307 sirius: add v7.2.3 (#23785) 2021-05-19 15:26:36 +02:00
Andreas Baumbach
f9aa929082 verilator: add v4.108 and v4.020 (#23736) 2021-05-19 12:37:40 +00:00
Valentin Volkl
46a9dd1889 py-qtconsole: fix misnamed variant (#23746) 2021-05-19 12:15:04 +00:00
Seth R. Johnson
3d2cd48048 Use define_from_variant in numerous CMakePackages (#23655) 
Example replacement:
```
'-D(\w+)(:BOOL)?=\{0\}'\.\s*format\s*\(\s*'(ON|YES|true|TRUE)' if '\+(\w+)' in (self\.)?spec else '(OFF|NO|false|FALSE)'\)
```
with
```
self.define_from_variant('\1', '\4')
```

This will cause failures if any variants were misspelled: I have already caught two packages with nonexistent variants.
 2021-05-19 06:59:06 -04:00
albestro
33df3990de conflict for apple-clang building findutils (#23740) 2021-05-19 09:19:58 +00:00
Robert Mijakovic
2894c24125 r: add v4.1.0 (#23757) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
 2021-05-19 10:00:52 +02:00
Jamie Finney
b3004e1dd0 Add caret/hat to spack spec help documentation (#23758) 
Co-authored-by: Jamie Finney <finneyjm@ornl.gov>
 2021-05-19 09:49:07 +02:00
Massimiliano Culpo
8146c0d848 gawk: add support for external find (#23716) 2021-05-19 09:33:28 +02:00
Paul
ccbd1f1d79 Go: add v1.16.4 and v1.15.12 (#23745) 2021-05-19 09:26:19 +02:00
Brian Van Essen
932e916c59 RDKit: new package (#23761) 
RDKit is a collection of cheminformatics and 
machine-learning software written in C++ and
Python.
 2021-05-19 09:25:40 +02:00
David Hughes
1a8d18a2d3 mpich: Apply fallow-argument-mismatch parameter with clang (#23748) 2021-05-19 06:46:51 +00:00
Adam J. Stewart
f407539abb py-pygeos: add v0.10 (#23781) 2021-05-19 06:19:17 +00:00
Valentin Volkl
2e58d09303 py-qtpy: recipe bugfix (#23747) 2021-05-19 07:34:59 +02:00
Vanessasaurus
8bed109e41 monitor: fix issue with attribute lookup (#23773) 
Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
 2021-05-19 07:33:09 +02:00
Massimiliano Culpo
1a5924f5fb gnupg: bumped versions, added maintainer (#23734) 2021-05-19 05:17:42 +00:00
Andreas Baumbach
77f155fec4 py-jinja2: add version 2.11.3 (#23698) 
* py-jinja2: add version 2.11.3

Change-Id: If845ff512bafed4d911b03463cae2154357ae5c3

* fixup

Change-Id: Ie39a8b7225826547fcbdb68cb083311a191903ef
 2021-05-19 04:57:23 +00:00
wspear
b21a4f5c89 TAU needs to specify pdt_c++ if built with intel. (#23775) 2021-05-19 02:08:14 +00:00
Tamara Dahlgren
5bd42d1b31 docs/packaging guide: Reference test stage directory (#23707) 2021-05-18 17:56:38 -07:00
Dan Bonachea
ce7516f25f upcxx: Add support for stand-alone post-install tests (#23714) 
This uses the existing script which is always installed for this purpose in modern versions.
 2021-05-18 17:40:51 -07:00
Michael Kuhn
f0d5d992e6 lmdb package: Fix build with other compilers (#23704) 
lmdb hardcodes gcc in its Makefile, so override it.
 2021-05-18 17:18:48 -07:00
Robert Mijakovic
79d8691dde mercurial: add version 5.8 (#23756) 2021-05-18 17:02:48 -07:00
Robert Mijakovic
18edf0f072 emacs: add version 27.2 (#23753) 2021-05-18 17:01:29 -07:00
Andreas Baumbach
60a6281c47 py-werkzeug: add versions including 0.15.6 (#23728) 2021-05-18 17:00:44 -07:00
Frédéric Simonis
6bf6567f9d precice: Add version 2.2.1 (#23743) 2021-05-18 16:37:40 -07:00
Michael Kuhn
9410d99153 Bugfix: fetching oddly-named resources from local mirrors (#23300) 
Spack uses curl to fetch URL resources. For locally-stored resources
it uses curl's file protocol; when using this protocol, curl expects
that the URL encoding conforms to RFC 3986 (which reserves characters
like '?' and '=' for special use).

We were not performing this encoding, and found a resource where
curl was interpreting this in an unfavorable way (succeeding, but
producing an empty file). This commit properly encodes URLs when
using curl's file protocol.

This error did not likely come up before because in most contexts
Spack was either fetching via http or it was using URLs without
offending characters (for example, the sha-based URLs in mirrors
never contain these characters).
 2021-05-18 15:26:49 -07:00
Robert Mijakovic
ba68cbc694 julia: new version, 1.6.1 (#23755) 
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
 2021-05-18 23:03:51 +02:00
Harmen Stoppels
4f6b4dcaac New package: ca-certificates-mozilla (#23632) 2021-05-18 12:50:45 -07:00
Andreas Baumbach
346e52de38 cppcheck: add versions including 2.0 and 1.88 (#23678) 2021-05-18 11:23:22 -07:00
Andreas Baumbach
b41ee03475 doxygen: fix build with gcc@10: for version 1.8.15 (#23680) 2021-05-18 11:21:54 -07:00
Desmond Orton
c22a5326d8 trinity: Version Update to 2.12.0 (#23430) 
Added version requirements for deps
Changed url to get proper versions
 2021-05-18 11:12:33 -07:00
Andreas Baumbach
13cb8ef2c2 fontconfig: add version 2.13.93 (#23681) 2021-05-18 11:03:40 -07:00
Justin M Wozniak
99cd09b2b2 Swift/T Release 1.5.0 (#23702) 
Add versions to adlbx (1.0.0), exmcutils (0.6.0), stc (0.9.0),
and turbine (1.3.0).
 2021-05-18 11:02:31 -07:00