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Author SHA1 Message Date
Tamara Dahlgren
6f25e5242e Docs: Updated copyrights in files still using 2020 as ending year (#23215) 2021-04-22 22:23:09 -07:00
Robert Pavel
e64fe11506 Initial Version of Ascent Miniapp Spackage (#23170) 
Initial version of ascent miniapp spackage
 2021-04-22 18:35:43 -07:00
Mark W. Krentel
09028f7407 hpctoolkit: fix patch from #22864 (#23149) 
PR #22864 added a patch to hpctoolkit to fix an issue with gcc 10.x, and the patch was applied to all revs unconditionally.  But this was fixed in hpctoolkit master on Aug 11, 2020, so the patch should only apply to old revs.

Fixes #22951.
 2021-04-22 19:07:13 -06:00
Itaru Kitayama
010e5761d6 NEST package: add version @master; fix ~python (#23211) 2021-04-22 14:35:00 -07:00
estewart08
b0e4950555 [AMD] - rocm-openmp-extras 4.1 updates. (#22998) 
Update package with 4.1 sha keys.
Use variant to disable openmp in the build of llvm-amdgpu.
Set CPATH, LIBRARY_PATH so that clang knows to look in the rocm-openmp-extras for headers/libraries.
Disable flang warnings as Spack thinks they are errors.
In ROCm 4.1, the plugin changed names from hsa -> amdgpu.
Update HSA_INCLUDE for 4.1.0.
 2021-04-22 12:11:39 -07:00
Kelly (KT) Thompson
c3733771e4 Update patchfile to allow xl+cuda builds. (#23201) 2021-04-22 12:10:12 -06:00
Harmen Stoppels
b904e9aa1c SIRIUS 7.2.1 (#23199) 2021-04-22 11:40:25 -06:00
Massimiliano Culpo
89ae2cb365 minisign: add v0.9 and v0.8 (#23202) 2021-04-22 10:31:56 -07:00
Frank Willmore
60c909cee5 prepend missing self. to spec (#23172) 2021-04-22 11:40:17 -05:00
Massimiliano Culpo
46088aa5da qa: install clingo-cffi from pip (#23163) 
Clingo has been released on PyPI, so there
are no more concerns on our CI depending
on pypy.test for installing the wheel.

Apparently we have parts of Spack which
are not compatible with kcov > 3.4
 2021-04-22 09:35:17 +02:00
Gregory Lee
7322a9e3be boost: only apply boostrap-toolset.patch for version 1.75 (#23174) 2021-04-21 21:25:07 -06:00
Glenn Johnson
e0549f5e88 ncbi-rmblastn: add v2.11.0 (#22788) 2021-04-22 05:20:51 +02:00
Jen Herting
5bec197de1 New package: r-assertive-files (#23183) 
Co-authored-by: Alex Leute <acl2809@rit.edu>
Co-authored-by: Alex C Leute <aclrc@rit.edu>
 2021-04-21 17:24:22 -05:00
Jen Herting
ae045ac071 New package: r-assertive-matrices (#23184) 
Co-authored-by: Alex Leute <acl2809@rit.edu>
Co-authored-by: Alex C Leute <aclrc@rit.edu>
 2021-04-21 17:20:36 -05:00
Jen Herting
da520d7bb3 New package: r-assertive-datetimes (#23180) 
Co-authored-by: Alex Leute <acl2809@rit.edu>
Co-authored-by: Alex C Leute <aclrc@rit.edu>
 2021-04-21 17:18:45 -05:00
Harmen Stoppels
730fbae463 Disable multithreaded version of zstd by default (#23167) 
* Disable multithreaded version of zstd by default

* zstd pthreads by default again! but configurable, and turned off in GCC
 2021-04-21 22:17:08 +02:00
Jen Herting
ee76c329f8 New package: r-assertive-numbers (#23181) 
Co-authored-by: Alex C Leute <aclrc@rit.edu>
 2021-04-21 19:30:31 +00:00
Sergei Shudler
75fd886f62 MAGMA: Add e4s testsuite-inspired smoke test (#23011) 2021-04-21 11:12:59 -07:00
Massimiliano Culpo
d670f3aa40 lbann: remove deprecated variants in opencv (#23176) 2021-04-21 17:28:33 +00:00
Cameron Stanavige
0ea1b9705f axl: add version 0.4.0 (#23044) 
* Swap .zip downloads with .tar.gz downloads (and update download
  hashes)
* New variants: intel_cppr and bbapi_fallback support
 2021-04-21 10:24:30 -07:00
Cameron Stanavige
44d995b6d5 unifyfs: add version 0.9.2 (#22390) 
UnifyFS has been integrated with updated versions of its mochi-margo
dependency (and mochi-margo's mercury and libfabric dependencies).

This removes support for version 0.9.0
 2021-04-21 10:20:41 -07:00
Harmen Stoppels
febeca2b05 Fix GCC with zstd on CCentOS 7 where it doesn't consider the lib64 directory (#23169) 2021-04-21 10:25:14 -06:00
Cyrus Harrison
a97ef832d9 conduit package: avoid issue with subclass case (#23156) 
* avoid issue with subclass case

* catch named exception
 2021-04-21 10:21:21 -05:00
Adam J. Stewart
8182994cee OpenCV: overhaul package (#22340) 2021-04-21 03:01:04 -06:00
Massimiliano Culpo
3325eff486 ASP-based solve: minimize compiler mismatches (#23016) 
fixes #22718

Instead of trying to maximize the number of
matches (preferred behavior), try to minimize
the number of mismatches (unwanted behavior).
 2021-04-21 01:02:43 -07:00
Massimiliano Culpo
9a473d6ab3 ASP-based solver: suppress warnings when constructing facts (#23090) 
fixes #22786

Trying to get optimization flags for a specific target from
a compiler may trigger warnings. In the context of constructing
facts for the ASP-based solver we don't want to show these
warnings to the user, so here we simply ignore them.
 2021-04-21 01:02:10 -07:00
Brian Van Essen
4ee3934fb3 lbann: requirements of the new variants for the legacy versions (#23159) 
Fixed the range of conduit for legacy versions of LBANN.
 2021-04-20 18:33:05 -07:00
Chris White
58a897be0e check for package in spec not variant (#23157) 2021-04-20 18:13:15 -06:00
Glenn Johnson
09e80604f5 Catch rstudio based URL for cran attribute in create.py (#23072) 2021-04-20 19:03:42 -05:00
Brian Van Essen
fd9918ab6f Removed unnecessary code to put cuda_arch in DiHydrogen (#23158) 
These were deprecated when the custom cuda_arch list was
removed.  Also fixed up the Aluminum dependencies for Hydrogen and
DiHydrogen.  Turns out that Aluminum v0.6.0 didn't have a correct
version in CMake and thus the interaction with older versions of
Hydrogen and DiHydrogen needed to be corrected.
 2021-04-20 16:54:12 -07:00
Mansour Moufid
73d1c0911c libsigsegv: update to version 2.13. (#23155) 2021-04-20 22:39:10 +00:00
Vanessasaurus
b9a2b1c096 Fixing typo tty.fail -> tty.die and monitor docstrings (#23152) 
This isn't a significant issue, but I noticed that the docstring incorrectly references "tty.fail" and I wanted to quickly fix it to reflect the correct command, tty.die. I also wanted to fix the docstrings to not be large clumps, to what @tgamblin suggested after I wrote this - having one line at the top that is a quick summary, and more verbose after that.
 2021-04-20 14:53:30 -07:00
Ethan Stam
293c8bf621 Use xz instead of lzma. XZ utils provides lzma dev files (#23144) 2021-04-20 15:39:47 -04:00
Cameron Stanavige
5931995364 redset: add versions 0.0.5 and 0.0.4 (#22977) 
Also update the url and hash of v0.0.3.
 2021-04-20 12:04:58 -07:00
Cameron Stanavige
f4d8382a4f shuffile: add version 0.0.4 (#22976) 
Also update the url and hash for v0.0.3.
 2021-04-20 12:03:58 -07:00
KoyamaSohei
fa06dbb324 New package: pmemkv 2021-04-20 11:52:36 -07:00
Sinan
d0dcde7c69 Package libsecret: turn off gobj variant by default (#23070) 
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
 2021-04-20 11:49:05 -07:00
miheer vaidya
58789130a8 emacs package: add version @master (#23075) 2021-04-20 11:37:38 -07:00
Shintaro Iwasaki
a42c11ff0b argobots: support new variants (#23133) 2021-04-20 18:23:30 +00:00
iarspider
0fec636bf4 oracle-instant-client package: add dependency on libaio (#23080) 2021-04-20 11:22:51 -07:00
Massimiliano Culpo
750fa8d810 etsf-io: added missing mpi variant (#23083) 
The variant was mentioned in a depends_on directive,
but never declared
 2021-04-20 11:21:30 -07:00
Massimiliano Culpo
67afe7016f angsd: fix typo in variants (#23081) 2021-04-20 11:20:23 -07:00
Massimiliano Culpo
7dc9a0082b geopm: remove reference to nonexistent variant (#23084) 2021-04-20 11:19:29 -07:00
Glenn Johnson
afd69866d1 New package: r-mcmcpack (#23139) 2021-04-20 11:17:49 -07:00
Glenn Johnson
25a9a40a12 New package: r-missmethyl (#23140) 2021-04-20 11:16:59 -07:00
Glenn Johnson
639d66720f New package: r-projpred (#23141) 2021-04-20 11:15:40 -07:00
Massimiliano Culpo
8058aecd2a lammps: fix typo in variant name (#23085) 
In two conflicts we used +adios instead of +user-adios
 2021-04-20 11:55:29 -06:00
Brian Van Essen
5461411f21 Set the minimum version of NCCL for aluminum (#23135) 2021-04-20 09:49:13 -07:00
Glenn Johnson
7925705d1d r-experimenthub: new package (#23095) 2021-04-20 10:31:11 -06:00
Ryan Marcellino
f1d66b767d add py-setuptools dependency (#23120) 2021-04-20 11:13:42 -05:00