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Author SHA1 Message Date
eugeneswalker
b38a814dc9 e4s ci stack: add spec: hdf5-vol-async (#31747) 
* e4s ci stack: add spec: hdf5-vol-async

* hdf5-vol-async: add e4s tag
 2022-07-26 16:21:56 -06:00
eugeneswalker
3b692875d8 mpich@4.0.2 %oneapi: patch config.rpath (#31740) 2022-07-26 15:41:42 -06:00
Harmen Stoppels
1319e2d261 openmpi: +pmi implies schedulers=slurm (#31722) 2022-07-26 14:04:55 -07:00
Harmen Stoppels
cffdd86d11 libjwt: new versions, missing dep, disable examples (#31723) 2022-07-26 14:04:27 -07:00
Harmen Stoppels
43d53a032a jansson: new version, disable docs (#31724) 
We don't have the build deps for the docs, so disable for now.
 2022-07-26 14:04:11 -07:00
Harmen Stoppels
15ee035f97 json-c: 0.16 (#31726) 2022-07-26 13:50:23 -07:00
Harmen Stoppels
c8c46bd012 munge: 0.5.15 (#31727) 2022-07-26 13:50:08 -07:00
Harmen Stoppels
fa3808bebd libgcrypt: bump (#31728) 2022-07-26 13:49:52 -07:00
Harmen Stoppels
644cfb5197 libgpg-error: bump (#31729) 2022-07-26 13:44:12 -07:00
Harmen Stoppels
859b56a105 gnupg: bump and deprecate over cve (#31730) 2022-07-26 13:43:53 -07:00
Harmen Stoppels
ce039e4fa5 environment.py: reduce # of locks further (#31643) 
* environment.py: reduce # of locks further
 2022-07-26 09:00:27 -07:00
Harmen Stoppels
e2056377d0 containerize: fix concretization -> concretizer (#31594) 
* containerize: fix concretization -> concretizer

* fix test
 2022-07-26 08:56:24 -07:00
Harmen Stoppels
a552c27f74 cmake: missing patch releases (#31676) 2022-07-26 08:54:23 -07:00
Chuck Atkins
f38a2ebb25 llvm: Variant and dependency cleanup (#31331) 
* llvm: Use variant when clauses for many of the expressed conflicts

* llvm: Remove the shared variant as it wasn't really used

* llvm: Remove unnecessary deps and make explicit the ones that are

* llvm: Cleanup patch conditions

* pocl: Update for llvm cleanup

* unit-test: update unparse package hash with the updated llvm package

* llvm: Fix ppc long double patching and add clarifying comments
 2022-07-26 10:45:20 -05:00
Stephen Sachs
6a240c9b39 Fix self.extension for symlinks (#31743) 
`self.archive_file` is (among others) a symlink to a tarball. `extension()` on a
symlink will result in no extension. This patch fixes the behavior introduced in
https://github.com/spack/spack/pull/31618.

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
 2022-07-26 13:05:41 +00:00
eugeneswalker
0662bbdc43 openblas %oneapi: patch f_check for proper linkage (#31737) 2022-07-25 15:38:11 -07:00
Richard Berger
7be0dac36b new package: singularity-eos (#31500) 2022-07-25 23:41:24 +02:00
snehring
885a7a1979 gdal: fixing typo for libxml2 (#31734) 2022-07-25 14:05:45 -06:00
psakievich
8cde20997d GCC: Add bootstrap conflict for M1 (#31189) 2022-07-25 15:12:54 -04:00
Paul Ferrell
babb0edf07 LLVM requires swig version > 3 (#31625) 2022-07-25 15:50:22 +02:00
haralmha
bf838fe15f llvm: Add missing include for version range 8 to 11 (#31639) 2022-07-25 11:39:12 +02:00
Harmen Stoppels
b56871dd9c Fix stage with uri params (#31618) 
* don't determine extension of a url

* parse url to drop query params from filename
 2022-07-25 10:31:13 +02:00
snehring
fe0643a14e wget: replacing prior workaround with proper fix (#31699) 
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2022-07-25 10:29:28 +02:00
Adam J. Stewart
cd4d657c2f py-torchdata: add new package (#31704) 
* py-torchdata: add new package

* third_party deps only in 0.4+
 2022-07-25 10:22:53 +02:00
Adam J. Stewart
afbb4dbc88 py-torchmetrics: add v0.9.3 (#31707) 2022-07-25 10:22:25 +02:00
Adam J. Stewart
24869fd469 py-geopandas: add v0.11.1 (#31710) 2022-07-25 10:22:15 +02:00
Adam J. Stewart
d46e81798a py-sphinx: add v5.1.0 (#31711) 2022-07-25 10:21:52 +02:00
Adam J. Stewart
5850afc9dc Sphinx 5.1.0 breaks doc builds (#31709) 2022-07-24 21:45:01 +00:00
Ishaan Desai
241c7f7914 [py-pyprecice] add v2.4.0.0 (#31697) 
* Add py-pyprecice v2.4.0.0

* Adding lower bound to pip dependency

* Removing when=@:2.1 from dependencies packaging and pip
 2022-07-24 15:31:51 -05:00
Morten Kristensen
85b3c1d812 py-vermin: add latest version 1.4.1 (#31708) 2022-07-24 16:21:40 +02:00
Harmen Stoppels
215a99cbc3 clingo patch fixed in patch release (#31690) 2022-07-22 10:34:04 -07:00
Harmen Stoppels
517293efe0 llvm: fix patch already applied on main branch (#31694) 2022-07-22 09:46:03 -07:00
Harmen Stoppels
5cf7d8e9ef coreutils: gnulib patch (#31693) 
Co-authored-by: snehring <snehring@iastate.edu>
 2022-07-22 15:36:14 +02:00
Harmen Stoppels
fce861d2ac Mark external as explicit only when installing explicitly (#31665) 2022-07-22 15:20:17 +02:00
Hector Martinez-Seara
cfdfdf77e0 gromacs: Added version 2021.6 (#31692) 2022-07-22 15:18:59 +02:00
Harmen Stoppels
799553d302 autotools: add -I flag when non-standard libtool (#31677) 
When
1. Spack installs libtool,
2. system libtool is installed too, and
3. system automake is used

Spack passes system automake's `-I <prefix>` flag to itself, even though
it's a default search path. This takes precedence over spack's libtool
prefix dir. This causes the wrong `libtool.m4` file to be used (since
system libtool is in the same prefix as system automake).

And that leads to error messages about incompatible libtool, something
something LT_INIT.
 2022-07-22 15:11:38 +02:00
Massimiliano Culpo
5cf7bf3770 Use pkg_cls in spack.mirror.get_all_versions (#31636) 
fixes #31627

spack.mirror.get_all_versions now uses the package class
instead of the package object in its implementation.

Ensure spec is concrete before staging for mirrors
 2022-07-22 10:04:17 +02:00
Erik Schnetter
2b0b573827 mpitrampoline: New version 4.2.0 (#31683) 2022-07-22 09:22:24 +02:00
Nicholas Sly
0e6b57e953 py-torch: use immutable URLs for open-ce patches (#31672) 
* Update open-ce patches for py-torch to us immutable URLs.  Update magma dependency specs to be more explicit.

* Address comments for PR regarding URLs and conflicting variants.

Co-authored-by: Nicholas Cameron Sly <sly1@llnl.gov>
 2022-07-21 18:02:34 -06:00
Stephen Sachs
ee39fab226 [py-numpy] Newer versions do not build with icc (#31637) 
* [py-numpy] Newer versions do not build with `icc`

Workaround until https://github.com/numpy/numpy/issues/22011 is solved.

* [py-numpy] Remove whitespaces
 2022-07-21 12:33:41 -06:00
AMD Toolchain Support
5ffc095f63 Add version 3.2 of AMD libraries (#31538) 2022-07-21 13:32:28 +02:00
Adam J. Stewart
f85c4ec288 py-torch: ~caffe2 by default (#31656) 2022-07-21 09:43:02 +02:00
Adam J. Stewart
1af76946a4 py-torchvision: fix __version__ for stable releases (#31657) 2022-07-21 09:36:11 +02:00
Adam J. Stewart
609bc89fd9 py-gpytorch: add v1.8.0 (#31649) 2022-07-21 09:35:22 +02:00
Adam J. Stewart
de5a12c366 py-nbmake: add v1.3.3 (#31651) 2022-07-21 09:34:59 +02:00
Richard Berger
7d9c517c88 flecsi: correct version 2.x depends_on (#31658) 
Propagate +shared to legion
 2022-07-21 09:34:36 +02:00
Hadrien G
aa68f23177 root does not actually install libraries in /lib but in /lib/root (#31624) 2022-07-21 01:33:52 -06:00
Johannes Blaschke
15d50d81db ncdu: add v1.16 and v1.17 (#31659) 2022-07-21 09:24:25 +02:00
shanedsnyder
56f5492fc0 darshan: add v3.4.0 to runtime/util packages (#31666) 2022-07-21 09:16:41 +02:00
snehring
d8983497f7 giflib: restrict patch to darwin (#31670) 2022-07-21 08:52:50 +02:00