* new builtin package: biobb-common
* removed whitespace for the style test
* replaced ' by " for the style test
* changed import line for the style test
* Update var/spack/repos/builtin/packages/biobb-common/package.py
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
* Update var/spack/repos/builtin/packages/biobb-common/package.py
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
* Update var/spack/repos/builtin/packages/biobb-common/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* removed test
* using pypi instead of git
I hope this is declared the right way.
I tried to test it locally but I am having problems with a dependency (openblas) thus I can not even try if this works.
* upgraded version
* Added py prefix
* removed biopython version restriction
* directory with new py-prefixed name
* Delete old non-prefixed package
* Update var/spack/repos/builtin/packages/py-biobb-common/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
---------
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* update tarball urls, add new versions and update maintainers
* remove unnecessary variant like cross-compile
* use self.define and self.define_from_variant
* improve regex / bug that matches with -DMPICH_SKIP_MPICXX=1
Co-authored-by: Matthias Wolf <matthias.wolf@epfl.ch>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Previously, for abstract specs like:
```
foo ^[virtuals=a] bar ^[virtuals=b] bar
```
the second requirement was silently discarded on concretization. Now they're merged, and the abstract spec is equivalent to:
```
foo ^[virtuals=a,b] bar
```
* Added countdown repo
* Added fixed version of COUNTDOWN
* Style fixes
* Changed mantainer syntax
* Variants listed in alphabetical order by name
* Added conflicts and some reordering
* Fixed conflicts syntax
* Style fixes
* [@spackbot] updating style on behalf of danielecesarini
---------
Co-authored-by: danielecesarini <danielecesarini@users.noreply.github.com>
CMake may write and read from `~/.cmake` through `export(...)` and read `find_package(...)` respectively. We don't want this as it may influence the build in a non-deterministic way, so disable it for all versions of `cmake`.
* Trilinos: Add AMD to SuiteSparse TPL list
When Trilinos is built with SuiteSparse support, it should enable AMD as
one of the TPLs. It was previously enabling only UMFPACK. The Xyce
package uses AMD (but not UMFPACK).
* Xyce: Add 7.8 release and various improvements
In addition to adding the latest Xyce release (7.8), all the earlier
releases were deprecated, with the exception of 7.7.
The Trilinos specification was updated to remove unneeded packages,
explicitly enable all needed packages, and specify additional
do-not-build packages.
The serial build is now the default, with MPI still being an option.
I also epanded the explanation for one of the patches; and, finally, I
took the opportunity to update the Xyce description to better match the
current Xyce README description.
Fixes a bug where Spack did not generate module files of non-roots during
spack install with an active environment.
The reason being that Environment.new_installs only contained roots.
This PR:
Drops special casing of automatic module generation in post-install hooks
When `use_view`, compute environment variable modifications like always, and
applies a view projection to them afterwards, like we do for spack env activate.
This ensures we don't have to delay module generation until after the view is
created.
Fixes another bug in use_view where prefixes of dependencies would not be
projected -- previously Spack would only temporarily set the current spec's prefix.
Removes the one and only use of the post_env_write hook (but doesn't drop it to
make this backportable w/o changes)
Previously `std_args` was called on non-roots in a build context, which is redundant, and also leads to issues when `std_args` expects build deps of the `pkg` to be installed.
