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Author SHA1 Message Date
Caleb Robinson
becebe99b4 Updating torchgeo to 0.4.1 (#36793) 
* Updating torchgeo to 0.4.1

* Added some commas

* Update var/spack/repos/builtin/packages/py-torchgeo/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-torchgeo/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-torchgeo/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Changed fiona bounds

* Update var/spack/repos/builtin/packages/py-torchgeo/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2023-04-14 22:17:35 -04:00
Adam J. Stewart
e3bb6d98fb py-pyupgrade: add v3.3.1 (#36926) 2023-04-14 17:18:00 -07:00
Juan Miguel Carceller
89b8445eb0 Add jmcarcell to the maintainers of some packages (#36909) 
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
 2023-04-14 17:03:50 -07:00
Dan Bonachea
b7c2cc9b85 upcxx: Fixes for Cray targets (#36708) 
* upcxx: Enhance auto-detection for HPE Cray EX platforms

1. Some Cray EX systems use ALPS instead of SLURM, ensure we default
   the pmi-runcmd appropriately.

2. Some Cray EX systems run a stock kernel and lack a Cray PrgEnv
   (yes, really), so add a check for libfabric CXI provider as a
   last resort for detecting Cray EX, and ensure we don't choke on
   a lack of `$CRAYPE_DIR`.

* upcxx: Cray XC improvements

1. Future-proof Cray XC detection, in case Spack ever starts reporting
   it as "linux".
2. Revert cray-libsci workaround for ALCF Theta. The workaround no longer
   appears to be necessary, and is actually causing failures on Theta now.

* upcxx: Add level_zero variant detection
 2023-04-14 16:17:41 -07:00
Sergey Kosukhin
5efd689803 proj: fix installation of datum grid with Autotools (#36906) 2023-04-14 18:18:21 -04:00
Adam J. Stewart
4d11001046 Issue Templates: improve details formatting (#36923) 2023-04-14 12:16:22 -05:00
Doug Jacobsen
690394fabc Change environment modifications to escape with double quotes (#36789) 
This commit changes the environment modifications class to escape
strings with double quotes instead of single quotes.

Single quotes prevent the expansion of enviornment variables that are
nested within environment variable definitions.
 2023-04-14 10:13:17 -07:00
John W. Parent
7d083cf138 cmake: add version 3.26.3 (#36648) 2023-04-14 11:03:36 -04:00
Scott Wittenburg
bfa94c5781 gitlab ci: Better tagging of "service" jobs (#36846) 
- Tag non-rebuild jobs to target a cheaper (and more highly available)
subset of runners.

- Add missing resource requests to these jobs as well.
 2023-04-14 09:03:12 -06:00
kwryankrattiger
3710774d02 VTK-m: use conflict with virtuals variant with ROCm (#36845) 2023-04-14 16:55:46 +02:00
Alec Scott
32808f4fb5 yambo: add v5.1.1 (#36905) 2023-04-14 07:13:33 -04:00
Alec Scott
7c2fc29b6a tempestremap: add v2.1.6 (#36903) 2023-04-14 07:03:35 -04:00
Alec Scott
5504fd6730 speex: add v1.2.1 (#36902) 2023-04-14 12:28:37 +02:00
Alec Scott
7066b61be3 vecmem: add v0.24.0 (#36904) 2023-04-14 12:27:12 +02:00
Massimiliano Culpo
9ec289857c netcdf: fix bugs introduced with multiple build systems split (#36825) 
Fixes #36689

- The "base" builder class should be last in the MRO
- `filter_compiler_wrappers` needs to be moved to builders
- Decorating a function from a mixin class require using
   the correct metaclass for the mixin
 2023-04-14 10:59:12 +02:00
Massimiliano Culpo
92144d6375 lz4: fix bug on darwin, use makefile by default (#36820) 
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2023-04-14 09:43:59 +02:00
Wouter Deconinck
0c2aafec33 cernlib: depends_on openssl when platform=linux (#36837) 
Fixes #36836.
 2023-04-14 09:17:13 +02:00
Adam J. Stewart
2380810d60 py-lightning: add v1.9.5 (#36803) 2023-04-14 09:08:19 +02:00
Alec Scott
7786da9117 kubernetes: add v1.27.0 and split off new package kubectl (#36780) 2023-04-14 09:07:42 +02:00
Wouter Deconinck
87dca0130c (py-)onnx: new version 1.13.0, 1.13.1 (for py-torch@2) (#36797) 
* (py-)onnx: new version 1.13.0, 1.13.1 (for py-torch@2)

ONNX has a new version 1.13.1 which is required for py-torch +onnx_ml.
This version adds python 3.11 support, Mac M1/M2 support. No build
system changes changes.

- https://github.com/onnx/onnx/releases/tag/v1.13.0 (main changes)
- https://github.com/onnx/onnx/releases/tag/v1.13.1 (bugfixes)
- https://github.com/onnx/onnx/commits/main/CMakeLists.txt (top 6
  commits are on top of the last 1.12 release)
- https://github.com/onnx/onnx/blob/v1.13.1/requirements.txt
- https://github.com/onnx/onnx/blob/v1.13.1/requirements-release.txt

* py-onnx: update dependencies

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* protobuf: new version 3.22.2, depends_on abseil-cpp

* onnx: require c++14 for protobuf

* py-protobuf: new preferred version 3.20.3

* protobuf: new versions 3.20.2, 3.20.3

* [@spackbot] updating style on behalf of wdconinc

* protobuf: no double depends_on abseil-cpp

* py-protobuf: no preferred 3.20.3

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
 2023-04-13 21:25:58 -05:00
MikeG
f171d7ed15 py-dask-mpi: remove jupyter-server-proxy (#36680) 
* py-dask-mpi: remove jupyter-server-proxy

This dependency isn't a 'hard' one; it optionally simplifies getting access to the web consoles.
See: https://github.com/dask/dask-mpi/pull/102

* Add patch to remove unnecessary dependency

* review comments

* pass formatting
 2023-04-13 21:22:59 -05:00
Nisarg Patel
e2812a6e96 Update m4 (#36835) 
* Update m4

For %oneapi & %intel, we explicitly set -O0 so dependents of m4 do not break
        # The default optimization level for icx/icpx is "-O2", 
        # but building m4 with this level breaks the build of dependents. 
        # So we set it explicitely to "-O0".

* [@spackbot] updating style on behalf of hpcnpatel
 2023-04-13 21:02:43 -04:00
Adam J. Stewart
2b47a7a22f py-lightly: add new package (#36839) 2023-04-13 19:16:22 -05:00
eugeneswalker
a9db5620f5 remove x86_64_v3 tags (#36828) 2023-04-13 15:29:15 -05:00
Erik Schnetter
f4833a9869 mpiwrapper: New version 2.10.3 (#36816) 2023-04-13 20:28:51 +02:00
dependabot[bot]
4a44e4bed9 build(deps): bump actions/checkout from 3.5.0 to 3.5.1 (#36815) 
Bumps [actions/checkout](https://github.com/actions/checkout) from 3.5.0 to 3.5.1.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](8f4b7f8486...83b7061638)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-04-13 20:28:26 +02:00
Erik Schnetter
44e2d1cd03 mpitrampoline: add v5.2.3 (#36814) 2023-04-13 20:27:55 +02:00
Wouter Deconinck
ff319e9863 Resolve <include-fragment> tags e.g. in github release pages (#36674) 
This aims to resolve #34164 by resolving the <include-fragment> tags
that GitHub has started using for their release pages, see
https://github.github.io/include-fragment-element/.

This feels a bit hacky but intended as a starting point for discussion.
After reading a page during spidering, it first parses for
include-fragments, gets them all, and treats them all as separate pages.
Then it looks for href links in both the page itself and the fragments.

Co-authored-by: Alec Scott <alec@bcs.sh>
 2023-04-13 20:26:26 +02:00
Massimiliano Culpo
d918ae0bde containerize: strip binaries in a less aggressive way (#36683) 2023-04-13 17:09:34 +02:00
kwryankrattiger
b940468890 CI: Update Data Vis SDK image (#36761) 
Supersedes #34224
 2023-04-13 09:54:42 -05:00
Daniel Ahlin
0707ffd4e4 gromacs: Specify c++ stdlib for aocc (#36553) 
Co-authored-by: Christoph Junghans <junghans@lanl.gov>
 2023-04-13 07:39:58 -04:00
John W. Parent
7801577cd5 lz4: fixup incorrect builder method signature (#36812) 2023-04-13 12:33:55 +02:00
Jack Morrison
8668635f1f libfabric: Add v1.18.0; Drop linux-headers dependency (#36805) 
* Remove libfabric dependency on linux-headers package when building with OPX support.
* Add libfabric verison 1.18.0
 2023-04-12 21:50:19 -04:00
Daniel Ahlin
49fe67572e gromacs: Intel oneapi 2023 fixes (#36555) 
* gromacs: oneapi@2023 - g++-dependency and MKL path

Fixes to build with oneapi@2023 and MKL 2023.
* Depend on gcc and add GMX_GPLUSPLUS_PATH to it
* MKL seems to be picked up without explicit directives
  and the old directives fails (at least for my tests) with MKL
  2023.

* gromacs: oneapi@2023 fix - address style errors

* gromacs: add danielahlin as maintainer

Adding danielahlin as maintainer as discussed in https://github.com/spack/spack/pull/36555#issuecomment-1496224128 and https://github.com/spack/spack/pull/36555#issuecomment-1504682712

* Update package.py

---------

Co-authored-by: Christoph Junghans <christoph.junghans@gmail.com>
Co-authored-by: Christoph Junghans <junghans@lanl.gov>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2023-04-12 19:19:42 -06:00
John W. Parent
ced6353e14 Paraview package: build on Windows (#36583) 
* Prevent use of x11
* Don't define mpi compilers in cmake interface as MSMPI has no compiler
  wrapper.
 2023-04-12 21:18:32 -04:00
Massimiliano Culpo
32f2d7ab7e libgcrypt: add v1.10.2 (#36799) 2023-04-12 16:10:12 -04:00
John W. Parent
135a6a07f1 WGL: remove invalid variant detection (#36579) 
Plat variant was removed in a previous PR, now prevent that variant from
being detected externally.
 2023-04-12 13:04:51 -07:00
Massimiliano Culpo
a7ae996e6b Stop installing codecov from pip (#36804) 
It shouldn't be needed since we use Codecov's Github action

See here for more information https://community.codecov.com/t/codecov-yanked-from-pypi-all-versions/4259
 2023-04-12 19:28:55 +02:00
Wouter Deconinck
e08c02c471 py-hatchling: new version 1.14.0; new pkgs py-calver, py-trove-classifiers (#36796) 
* py-hatchling: new version 1.14.0; new pkgs py-calver, py-trove-classifiers

Hatchling 1.14.0 adds a new dependency on trove-classifiers, which in turn
depends on calver. So, those two packages needed to be added as well.

- f8915309d3
- https://github.com/pypa/trove-classifiers/blob/2023.3.9/pyproject.toml
- https://github.com/di/calver/blob/2022.06.26/pyproject.toml

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2023-04-12 12:52:10 -04:00
dependabot[bot]
385834bd43 build(deps): bump codecov/codecov-action from 3.1.1 to 3.1.2 (#36794) 
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3.1.1 to 3.1.2.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)
- [Commits](d9f34f8cd5...40a12dcee2)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-04-12 11:28:39 -04:00
Yang Zongze
46e45507dc hpddm: add new versions (#36769) 2023-04-12 08:59:33 +02:00
Simon Pintarelli
e3a420daed umpire: depends on camp~cuda when ~cuda (#36788) 2023-04-12 01:54:41 -04:00
Matthieu Dorier
78af0545c4 duckdb: add new package (#36682) 2023-04-12 07:26:53 +02:00
Kevin Huck
c3f207428c apex: add v2.6.2 (#36686) 2023-04-12 07:24:23 +02:00
Laura Weber
169704f72a sublime-text: Add licensing information (#36690) 2023-04-12 07:18:41 +02:00
Laura Weber
d4b8589b35 tecplot: Add version 2022r2, Licensing, Env setup (#36695) 2023-04-12 07:15:20 +02:00
Adam J. Stewart
60b573727e PROJ: googletest only needed to test (#36691) 2023-04-12 07:01:52 +02:00
Adam J. Stewart
e3e395769d py-tensorboard: add new versions (#36712) 2023-04-12 07:00:57 +02:00
Wouter Deconinck
8da72eb40b scitokens-cpp: new versions 0.7.1, 1.0.0 (#36714) 
Two new versions were released since 0.7.0.

- https://github.com/scitokens/scitokens-cpp/releases/tag/v0.7.1
- https://github.com/scitokens/scitokens-cpp/releases/tag/v1.0.0

Some changes to dependencies:
- openssl always was an explicit requirement (but transitively satisfied by curl),
- cmake 3.10 required for both new versions.

Tested that all these new versions build fine:
```console
18:04:40 wdconinc@menelaos ~/git/spack (develop *$%>) $ spack find -lvx
==> In environment scitokens-cpp
==> Root specs
------- scitokens-cpp@0.7.0  ------- scitokens-cpp@0.7.1  ------- scitokens-cpp@1.0.0

==> Installed packages
-- linux-ubuntu23.04-skylake / gcc@12.2.0 -----------------------
uvwdosd cmake@3.26.3~doc+ncurses+ownlibs~qt build_system=generic build_type=Release          5gqdlyl scitokens-cpp@0.7.1~ipo build_system=cmake build_type=RelWithDebInfo generator=make
r4bdoii scitokens-cpp@0.7.0~ipo build_system=cmake build_type=RelWithDebInfo generator=make  xnnvbsf scitokens-cpp@1.0.0~ipo build_system=cmake build_type=RelWithDebInfo generator=make
==> 4 installed packages
```
 2023-04-12 06:59:55 +02:00
Alec Scott
55fd89a576 glab: add v1.27.0 (#36723) 2023-04-12 06:55:29 +02:00