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Author SHA1 Message Date
Harmen Stoppels
b245f1ece1 Fix incorrect timer (#33900) 
Revamp the timer so we always have a designated begin and end.

Fix a bug where the phase timer was stopped before the phase started,
resulting in incorrect timing reports in timers.json.
 2022-11-15 16:33:47 +01:00
Harmen Stoppels
e10c47c53d glib: add missing libelf dep (#33894) 2022-11-15 07:18:10 -07:00
Harmen Stoppels
0697d20fd4 openssh: add libxcrypt (#33892) 2022-11-15 06:58:12 -07:00
Brian Van Essen
fd4f905ce5 External find now searches all dynamic linker paths (#33800) 
Add spack.ld_so_conf.host_dynamic_linker_search_paths

Retrieve the current host runtime search paths for shared libraries;
for GNU and musl Linux we try to retrieve the dynamic linker from the
current Python interpreter and then find the corresponding config file
(e.g. ld.so.conf or ld-musl-<arch>.path). Similar can be done for
BSD and others, but this is not implemented yet. The default paths
are always returned. We don't check if the listed directories exist.

Use this in spack external find for libraries.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2022-11-15 14:48:15 +01:00
Harmen Stoppels
d36c7b20d2 python: missing libxcrypt dep (#33847) 
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-11-15 14:36:16 +01:00
Harmen Stoppels
2948248d7a Remove exit(0) (#33896) 
Since they cause --backtrace to report backtraces even with exit code 0
 2022-11-15 14:35:44 +01:00
Jonathon Anderson
850c54c3b1 Revert "fix perl libxcrypt.so dep (#33846)" (#33909) 
This reverts commit bf1b2a828c, as libxcrypt's configure script requires Perl, leading to a circular dependency.
 2022-11-15 14:04:31 +01:00
Harmen Stoppels
90fb16033e gitlab: report load in generate job (#33888) 2022-11-15 13:21:21 +01:00
Matthieu Dorier
13a68d547d mochi-margo: add v0.11 (#33910) 2022-11-15 13:19:18 +01:00
Massimiliano Culpo
857ae5a74b fixup 2022-11-15 12:42:48 +01:00
Massimiliano Culpo
b3124bff7c Stop using six in Spack (#33905) 
Since we dropped support for Python 2.7, there's no need
so use `six` anymore. We still need to vendor it until
we update our vendored dependencies.
 2022-11-15 10:07:54 +01:00
Scott Wittenburg
5c4137baf1 gitlab: Add shared PR mirror to places pipelines look for binaries. (#33746) 
While binaries built for PRs that get merged must still be rebuilt
in develop pipelines, they can be used by other PRs that find they
would otherwise need to rebuild them.  Now that spackbot is
managing copying PR binaries from merged PRs into a shared location,
keeping it pruned to a reasonable size, and making sure the indices
are up to date, spack can use these mirrors as a potential source
of binaries.
 2022-11-14 19:37:23 -07:00
Stephen Sachs
a9dcd4c01e [py-pmw-patched] needs setuptools to build (#33902) 
Error message:
```
ModuleNotFoundError: No module named 'setuptools'
```

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
 2022-11-14 18:11:23 -06:00
Harmen Stoppels
2cd7322b11 swig: needs zlib (#33890) 2022-11-14 13:22:12 -07:00
Terry Cojean
f9e9ecd0c1 Ginkgo 1.5.0 version, new MPI variant, related fixes (#33838) 
* Ginkgo 1.5.0 release, new MPI variant

* Fix ROCTHRUST/ROCPRIM issues

* Fix deal.II issue with Ginkgo 1.5.0

* Also fix hipRAND+rocRAND RPATH settings

* Turn off CCACHE for spack builds.

Co-authored-by: Veselin Dobrev <dobrev@llnl.gov>

Co-authored-by: Veselin Dobrev <dobrev@llnl.gov>
 2022-11-14 12:33:11 -06:00
Veselin Dobrev
d756034161 Alquimia: tweak for building xsdk v0.8.0 with ROCm/HIP (#33881) 2022-11-14 12:15:50 -06:00
psakievich
2460c4fc28 Add $date option to the list of config variables (#33875) 
I'm finding I often want the date in my paths and it would be nice if spack had a config variable for this.

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2022-11-14 10:13:30 -08:00
Cory Bloor
6e39efbb9a rocm: add all GFX9, GFX10 and GFX11 amdgpu_targets (#33871) 
This change adds all documented AMDGPU processors from GFX9 through GFX11 and sorts the list.
 2022-11-14 10:11:22 -08:00
Satish Balay
277e35c3b0 superlu-dist: add version 8.1.2 (#33868) 2022-11-14 10:09:55 -08:00
Harmen Stoppels
bf1b2a828c fix perl libxcrypt.so dep (#33846) 
Detected using https://github.com/spack/spack/pull/28109
 2022-11-14 18:56:43 +01:00
Dom Heinzeller
2913f8b42b hdf4: fix build on Apple M1 (#33740) 2022-11-14 17:49:34 +01:00
Harmen Stoppels
57f4c922e9 util-linux: fix deps (#33893) 2022-11-14 17:26:21 +01:00
Todd Gamblin
8d82fecce9 Update CHANGELOG.md for v0.19.0 
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
 2022-11-14 08:22:29 -06:00
Todd Gamblin
96126cbf17 Update SECURITY.md for v0.19 2022-11-14 08:22:29 -06:00
Todd Gamblin
6ecb57e91f Bump version to v0.20.0.dev0 2022-11-14 08:22:29 -06:00
Harmen Stoppels
a75af62fe3 Get rid of context for exceptions outside PackageBase (#33887) 2022-11-14 14:11:22 +01:00
Massimiliano Culpo
e4e02dbeae Fix a bug/typo in a config_values.py fixture (#33886) 2022-11-14 05:26:14 -07:00
Massimiliano Culpo
3efa4ee26f Remove support for running with Python 2.7 (#33063) 
* Remove CI jobs related to Python 2.7

* Remove Python 2.7 specific code from Spack core

* Remove externals for Python 2 only

* Remove llnl.util.compat
 2022-11-14 13:11:28 +01:00
Harmen Stoppels
f4c3d98064 libxcrypt: 4.4.31 (#33885) 2022-11-14 04:30:04 -07:00
Harmen Stoppels
a4cec82841 Speed up traverse unit tests (#33840) 2022-11-14 09:34:14 +01:00
Veselin Dobrev
3812edd0db [plasma] add support for building with 'cray-libsci' (#33869) 2022-11-13 21:47:24 -06:00
Harmen Stoppels
3ea9c8529a tau: checksum (#33873) 2022-11-13 13:06:08 -07:00
Adam J. Stewart
ed28797f83 GDAL: add v3.6.0 (#33856) 
* GDAL: add v3.6.0

* Explicitly control BASISU

* More reasonable variant defaults
 2022-11-13 13:56:11 -06:00
Adam J. Stewart
eadb6ae774 py-pytorch-lightning: add v1.8.1 (#33854) 2022-11-13 11:45:23 -08:00
Veselin Dobrev
a5d35c3077 [sundials] fix cmake argument generation for '+magma' (#33858) 
[dealii] force cmake to accept Scalapack settings from Spack
 2022-11-13 09:50:57 -06:00
Todd Gamblin
3d811617e6 hotfix: ensure that schema is compatible with tutorial VM config 
We added a hotfix to releases/v0.19 with a feature flag, but the flag
is incompatible with the config schema on `develop`.

- [x] Ensure schema is compatible on develop even though config option is unused.
 2022-11-13 09:14:00 -06:00
Massimiliano Culpo
03224e52d2 Speed-up bootstrap and architecture unit tests (#33865) 
* Speed-up bootstrap mirror unit test

The unit test doesn't need to concretize, since it checks
only metadata for the mirror.

* architecture.py: use "default_mock_concretization" for slow test
 2022-11-13 13:09:22 +01:00
Greg Becker
4ebe57cd64 update tutorial command to newest release branch (#33867) 2022-11-12 13:29:38 -08:00
Greg Becker
343cd04a54 use spack.version_info as source of version truth for spack tutorial command (#33860) 
* Use spack.spack_version_info as source of truth

Co-authored-by: Todd Gamblin <gamblin2@llnl.gov>
 2022-11-12 11:42:59 -08:00
Morten Kristensen
ed45385b7b py-vermin: add latest version 1.5.1 (#33861) 2022-11-12 10:31:23 -06:00
Cameron Rutherford
8a3b596042 Update ExaGO for 1.5.0 release. (#33853) 
* Update ExaGO for 1.5.0 release
 2022-11-11 21:58:56 -06:00
Satish Balay
1792327874 magma: add version 2.7.0 (#33814) 
* magma: add version 2.7.0

Co-authored-by: Stan Tomov <tomov@icl.utk.edu>
 2022-11-11 21:58:02 -06:00
Veselin Dobrev
d0dedda9a9 [mfem] add a patch to fix some issues with building with ROCm (#33810) 2022-11-11 14:42:42 -08:00
Harmen Stoppels
368dde437a libxcrypt: 4.4.30 (#33845) 
* libxcrypt: 4.4.30

* libxcrypt.so.2 by default

* add libs prop, since libxcrypt provides libcrypt
 2022-11-11 15:22:17 -06:00
Massimiliano Culpo
022a2d2eaf Speed-up unit tests by caching default mock concretization (#33755) 2022-11-11 21:32:40 +01:00
kwryankrattiger
5f8511311c ParaView: Add variant for VisItBridge (#33783) 
* ParaView: Add variant for VisItBridge

* ParaView: Add kwryankrattiger has package maintainer
 2022-11-11 13:09:43 -07:00
Greg Becker
2d2c591633 ensure view projections for extensions always point to extendee (#33848) 2022-11-11 10:59:23 -07:00
Satish Balay
d49c992b23 xsdk: update maintainers (#33822) 2022-11-11 08:30:28 -06:00
Satish Balay
f1392bbd49 trilinos: add version 13.4.1 (#33533) 
And update dependency on superlu-dist (now works with @8)
 2022-11-11 09:28:47 -05:00
Harmen Stoppels
c14dc2f56a docs: updates related to extensions (#33837) 2022-11-11 13:24:17 +01:00