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Author SHA1 Message Date
bernhardkaindl
1b95c97bb3 ccfits: add v2.6 (#26089) 
ccfits@2.5 doesn't compile on Ubuntu 18.04: Update to version 2.6.
 2021-09-21 04:43:48 -06:00
bernhardkaindl
c6a33c28de Fix deps of diffmark,faiss,fgsl,fipcheck,nbdkit,ncbi-magicblast,xcb-util-cursor (#26091) 
Fix missing type='build' deps for cpio, m4, pkg-config and python in
diffmark, faiss, fgsl, fipcheck, nbdkit, ncbi-magicblast and xcb-util-cursor
 2021-09-21 04:16:43 -06:00
Harmen Stoppels
58663692a4 Rename 'variant_name' to 'variant' and document it in autotools build system (#26064) 2021-09-21 11:27:41 +02:00
Christoph Junghans
45ba4d94bd votca-* packages: add version 2021.2 (#26058) 2021-09-20 16:14:19 -07:00
Adam J. Stewart
3e3b7b1394 New package: py-torchgeo (#26059) 2021-09-20 16:12:55 -07:00
Jordan Ogas
d0fd9e6d5f charliecloud package: add version 0.25 (#26073) 2021-09-20 16:08:41 -07:00
adityakavalur
88880c5369 Include newer versions of UCX (#26072) 2021-09-20 23:41:26 +02:00
Danny McClanahan
aa7e354a3a patch serf and scons to use #!/usr/bin/env python3 (#26062) 2021-09-20 22:12:30 +02:00
iarspider
f3d2f62468 Add variants to FORM recipe (#25963) 2021-09-20 13:53:54 -06:00
Edward Hartnett
65f285831e added NOAA maintainers to ip package (#26055) 2021-09-20 11:36:03 -06:00
Olivier Cessenat
0197b364a2 mfem and petsc: alter hypre dependencies (#25902) 
Hypre latest version 2.22.1 breaks MFEM and PETSc.
 2021-09-20 09:51:29 -07:00
Edward Hartnett
96eefea9a3 added NOAA software team to maintainers list (#26056) 2021-09-20 09:01:53 -06:00
Olivier Cessenat
1ea58e0cb9 p7zip: resolve gcc 10 conflict (#25676) 
Fix credit: Eric Brugger
 2021-09-20 07:43:07 -04:00
Tamara Dahlgren
c6f9e9baf6 strumpack: Update stand-alone test to use stage directory (#25751) 2021-09-20 07:36:58 -04:00
kjrstory
430caaf5f6 paraview: patch for version 5.9.1 with gcc 11.1.0 (#25887) 
* paraview: patch for version 5.9.1 with gcc 11.1.0

* Fix : blank line contains whitespace
 2021-09-20 07:31:54 -04:00
Robert Underwood
6476e0cf02 gdb: new version v11.1 (#25920) 2021-09-20 07:30:37 -04:00
Jen Herting
acd4186a88 New packages: py-imgaug (#25894) 
* updates from sid

* [py-imgaug] url -> pypi

* [py-imgaug] added version 0.4.0 and fixed up dependencies

* [py-imgaug] updated copyright

Co-authored-by: Andrew Elble <aweits@rit.edu>
 2021-09-20 07:29:43 -04:00
iarspider
ca8d16c9d1 Allow setting variant name in AutotoolsPackage._activate_or_not (#26054) 2021-09-20 10:54:24 +02:00
jacorvar
d20fa421ca Fix R version (#26061) 
R version should be `3.0.0` instead of `3.00`.
 2021-09-20 10:47:40 +02:00
Edward Hartnett
8fceaf4a33 added NOAA software team to maintainers list (#26057) 2021-09-19 19:02:02 -06:00
Vanessasaurus
534bad0ff7 updating OmegaH to 9.34.1 (#26015) 2021-09-19 08:55:54 -06:00
Todd Gamblin
4f8b643404 Create SECURITY.md 2021-09-19 06:43:14 -07:00
Vanessasaurus
c2f42a6f09 updating kokkos to 3.4.01 (#26013) 2021-09-19 06:10:55 -06:00
Vanessasaurus
148c7aeb06 updating singularity to 3.8.3 (#26020) 
Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
 2021-09-19 04:20:15 -06:00
jacorvar
4f79a83dd1 Fix R version (#26047) 
R version should be `3.0.0`, in contrast to `3.00`.
 2021-09-19 12:14:14 +02:00
Alec Scott
2d4d51eb5e Add v1.6.0 to Benchmark (#25996) 2021-09-18 20:59:02 -06:00
Cameron Smith
b14d6d217e omegah: add version 9.34.1 (#25828) 2021-09-18 19:58:44 -06:00
Alec Scott
5b400a69b7 Add v0.935 to Angsd (#25995) 2021-09-18 18:46:55 -06:00
Adam J. Stewart
c0839b14d5 Python: use platform-specific site packages dir (#25998) 2021-09-19 00:37:50 +00:00
Seth R. Johnson
6ff5795342 cmake: allow gcc on macOS for newer versions (#25994) 2021-09-18 17:34:43 -06:00
Michele Martone
60f0d0ac20 librsb: add v1.2.0.10 (#26044) 2021-09-18 17:43:41 -04:00
Axel Huebl
8f3482b2ce FFTW: Fix OpenMP Build on macOS (#26039) 2021-09-18 15:13:47 -06:00
Vanessasaurus
fc79a5da17 updating siesta to 4.0.2 (#26021) 2021-09-18 08:05:02 -06:00
Vanessasaurus
1880db8457 updating universal ctags to 5.2.0.xxxx (#26024) 2021-09-18 07:13:55 -06:00
Vanessasaurus
6538727fb3 updating sparsehash to 2.0.4 (#26023) 2021-09-18 06:52:59 -06:00
Vanessasaurus
f5275fecc5 updating htslib to 1.13 (#26012) 2021-09-18 06:26:00 -06:00
Vanessasaurus
d499309433 updating nco to 5.0.1 (#26014) 2021-09-18 06:23:05 -06:00
Vanessasaurus
c5e2662dea updating graphviz to 2.49.0 (#26011) 2021-09-18 06:19:56 -06:00
Vanessasaurus
7b0a505795 updating veloc to 1.5 and cleaning up spacing (#26025) 2021-09-18 06:10:56 -06:00
Vanessasaurus
e8b86b7ec6 updating cloc to 1.9.0 (#26009) 2021-09-18 05:44:04 -06:00
Vanessasaurus
608a0b1f8f updating poppler (#26016) 2021-09-18 05:10:56 -06:00
Vanessasaurus
abd11cf042 updating raxml to 8.2.12 (#26018) 2021-09-18 04:58:50 -06:00
Vanessasaurus
8ad910d8f1 updating protobuf (Gooooogle!) to 3.18.0 (#26017) 2021-09-18 04:40:49 -06:00
Vanessasaurus
d5c985b888 updating samtools to 1.13 (#26019) 2021-09-18 04:16:51 -06:00
Vanessasaurus
f0443d0327 updating spades to 3.15.3 (#26022) 2021-09-18 03:46:50 -06:00
Vanessasaurus
9af1858bff updating gatk to 4.2.2.0 (#26010) 2021-09-18 10:07:28 +02:00
David Beckingsale
fa3265ea51 Convert RAJA, CHAI and Umpire to CachedCMakePackages (#25788) 
* Switch Umpire to CMakeCachedPackage
* Fix missing import
* Correct tests option in Umpire
* Switch RAJA to CachedCMakePackage
* Convert CHAI to CachedCMakePackage
* Corrections in RAJA
* Patches in Umpire & RAJA for BLT target export
* Fixup style
* Fixup incorrect use of cmake_cache_string
 2021-09-17 21:29:41 -07:00
Chris White
79ac572f21 update tutorial version of hdf5 (#25368) 2021-09-17 17:34:56 -07:00
Massimiliano Culpo
b847bb72f0 Bootstrap should search for compilers after switching config scopes (#26029) 
fixes #25992

Currently the bootstrapping process may need a compiler.

When bootstrapping from sources the need is obvious, while
when bootstrapping from binaries it's currently needed in
case patchelf is not on the system (since it will be then
bootstrapped from sources).

Before this PR we were searching for compilers as the
first operation, in case they were not declared in
the configuration. This fails in case we start
bootstrapping from within an environment.

The fix is to defer the search until we have swapped
configuration.
 2021-09-17 18:28:48 -06:00
Harmen Stoppels
4d36c40cfb Bump reframe (#25970) 2021-09-17 14:23:05 -06:00