Commit Graph

21426 Commits

Author SHA1 Message Date
Adam J. Stewart
83e66ce03e
Deprecate Python 2 support (#32615)
This PR deprecates using Spack to install [EOL Python versions](https://endoflife.date/python), including Python 2.7, 3.1–3.6. It also deprecates running Spack with Python 2.7. Going forward, we expect Spack to have the following Python support timeline.

### Running Spack

* Spack 0.18 (spring 2022): Python 2.7, 3.5–3.10
* Spack 0.19 (fall 2022): Python 2.7 (deprecated), 3.6–3.11
* Spack 0.20 (spring 2023): Python 3.6–3.11

### Building with Spack

* Spack 0.18 (spring 2022): Python 2.7, 3.1–3.10
* Spack 0.19 (fall 2022): Python 2.7, 3.1–3.6 (deprecated), 3.7–3.11
* Spack 0.20 (spring 2023): Python 3.7–3.11

This is a reboot of #28003. See #31824 for a detailed discussion of the motivation for this PR.
If you have concerns about this change, please comment on #31824.
2022-09-19 13:34:38 -07:00
Manuela Kuhn
cc78d5db36
py-datalad: add 0.17.5 (#32676)
* py-datalad: add 0.17.5

* Fix description of py-types-urllib3

* Update var/spack/repos/builtin/packages/py-datalad/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-datalad/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Add colorama dependency for windows

* Fix importlib-metadata dependency

* Update var/spack/repos/builtin/packages/py-pytest/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pytest/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pytest/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Use conflict to avoid dependency duplication

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-19 15:30:34 -05:00
rsanthanam-amd
8f8205af88
NCCL should not be dependent on ROCm builds since RCCL is used instead. (#32461)
Allow the nccl flag to be specified even for ROCm builds so that NCCL kernels are included in the build.

In this case the NCCL kernels will use RCCL as the backend implementation.
2022-09-19 15:02:02 -05:00
Stephen Sachs
13d870157f
Adding intel-oneapi-itac package (#32658)
* Adding intel-oneapi-itac package
* Make black happy
* add rscohn2 as maintainer
* black prefers double quotes

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
Co-authored-by: Robert Cohn <rscohn2@gmail.com>
2022-09-19 12:44:32 -07:00
Terry Cojean
5d42185698
Ginkgo: improve smoke testing (#32647)
* Ginkgo: improve smoke testing
* Fix style issues
* Pass `self.compiler.{cc,cxx}` to the smoke tests
2022-09-19 12:37:34 -07:00
Ashwin Kumar
3ffc7f4281
patch etsf-io tests (#32666)
(Patches from meisam.tabriz@mpcdf.mpg.de and smoke tests from @fangohr)
2022-09-19 12:31:59 -07:00
Wouter Deconinck
7d250c4bea
root: determine_variants cxxstd=20 support (#32673)
This is somewhat ahead of reality, but once/when external ROOT installs with cxxstd=20 are common, we will need this to pick up the correct variant.
2022-09-19 11:32:47 -07:00
snehring
edee67d96f
fasttree: updating to 2.1.11 (#32683) 2022-09-19 11:07:51 -07:00
Adam J. Stewart
bb071d03ba
py-sip: add v6.6.2 (#32695)
* py-sip: add v6.6.2

* Fix python deptype
2022-09-19 10:56:47 -07:00
Wouter Deconinck
0298823e28
edm4hep: allow variant cxxstd 20, sync with podio (#32698)
Now that `podio` can support `cxxstd` variants 17 and 20, we can allow `edm4hep` to use `cxxstd=20` as well, but must ensure that `edm4hep` uses the same `cxxstd` variant as `podio`. Solution as in `celeritas`.
2022-09-19 10:51:22 -07:00
Laurent Aphecetche
51d2c05022
geant4-vmc: add version 6-1-p1 (#32704) 2022-09-19 10:12:02 -07:00
iarspider
3762e7319d
Fix benchmark recipe after branch name was changed (#32708) 2022-09-19 10:08:30 -07:00
Wouter Deconinck
2f19826470
geant4: new bugfix version 11.0.3 (#32700)
Geant4 has a new bugfix version 11.0 patch-03, [release notes](https://geant4-data.web.cern.ch/ReleaseNotes/Patch.11.0-3.txt). No build system changes.
2022-09-19 13:11:31 +01:00
Manuela Kuhn
0f9cd73f58
py-neurora: add 1.1.6.8 (#32684) 2022-09-19 04:41:41 -06:00
Manuela Kuhn
17c16ac2fc
py-pydicom: add 2.3.0 (#32681) 2022-09-19 04:25:35 -06:00
John W. Parent
0376a62458
Attempt at patching phist find mpi heuristic (#32688)
for updated phist version
2022-09-18 11:18:28 -05:00
Manuela Kuhn
d4c13b0f8f
Add skip_import to PythonPackage and use it in py-nilearn (#32664)
* Add skip_import to PythonPackage and use it in py-nilearn

* Fix dependencies
2022-09-17 23:02:30 +00:00
Paul Kuberry
2c7c749986
xyce: Change preferred to last numeric version (#32679)
- Also handles new constraints on Trilinos version
2022-09-17 13:57:40 -06:00
Robert Cohn
9e0755ca3a
[intel-oneapi-compilers] fix CC/CXX (#32677) 2022-09-16 14:16:06 -04:00
liuyangzhuan
46d7ba9f78
adding butterflypack 2.2.0 (#32670) 2022-09-15 18:14:01 -06:00
iarspider
31c24cd0d5
New package: xrdcl-record (#32663)
* New package: xrdcl-record
* Flake-8
2022-09-15 10:13:37 -07:00
Matthew Archer
66b451a70d
Fenicsx v0.5.0 (#32611)
* initial commit of 0.5.0 changes
* updated dependencies
* updated ffcx sha
* comment style
* llvm compilers
* introduce pugixml dependency for 0.5.0:
* update compilers to support C++20 features
* style fixes
* xtensor and xtl not needed for basix 0.5.0 and above
* Skip to Basix 0.5.1

The 0.5.1 release removes the C++ build dependency on Python that sneaked into the 0.5.0 build system.

* Improve depends on version ranges
* More dependency version improvements

Co-authored-by: Chris Richardson <chris@bpi.cam.ac.uk>
Co-authored-by: Garth N. Wells <gnw20@cam.ac.uk>
2022-09-15 08:11:25 -07:00
Robert Underwood
6f15d8ac76
added missing dependency for py-msgpack that breaks neovim (#32631)
* added missing dependency for py-msgpack that breaks neovim

* Update var/spack/repos/builtin/packages/py-pynvim/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Robert Underwood <runderwood@anl.gov>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-15 09:45:39 -05:00
Glenn Johnson
123354e920
FPLO: add new package (#32580) 2022-09-15 10:03:05 +02:00
Matthieu Dorier
eaf3f7c17c
[py-pip] fix setup_dependent_package in py-pip (#32632) 2022-09-14 23:41:34 -06:00
Vicente Bolea
dde5867d15
libcatalyst: use git instead of fixed urls (#32642)
The issue is that we are not not able to install (Fetch URL error) any
version of catalyst other than the specified in the spack package.py.
This very version is accessible only because it is cached by Spack. The
real URL does not exist anymore, I believe the reason is that there used
to be a tag in catalyst that does not exist anymore.
2022-09-14 17:05:02 -07:00
Sergey Kosukhin
ebb20eb8f8
llvm: fix detection of LLDB_PYTHON_EXE_RELATIVE_PATH (#32584) 2022-09-14 12:45:41 -06:00
Valentin Volkl
01c9780577
py-awkward: allow newer, fixed rapidjson versions (#32650)
Rapidjson was constrained due to a bug (see https://github.com/spack/spack/pull/29889) , but newer (although untagged) versions of rapidjson have since been added to spack (https://github.com/spack/spack/pull/29869). Tested the build of py-awkward with the latest, works fine.
2022-09-14 11:57:20 -05:00
iarspider
5ffde1d51c
Add checksum for yoda 1.9.6 (#32648) 2022-09-14 09:48:56 -07:00
Ishaan Desai
4453653418
[py-pyprecice] add v2.5.0.0 and v2.5.0.1 and update checksum of v2.4.0.0 (#32551)
* Update versions 2.5.0.0 and 2.5.0.1

* Applying review changes

* Updating incorrect checksum for v2.4.0.0

* Add for loop to define depends_on for preCICE versions and bindings versions

* Formatting

* Missing comma
2022-09-14 09:55:48 -05:00
Paul Kuberry
f37e9addcd
compadre: add v1.5.0, v1.4.1 (#32609) 2022-09-14 06:49:52 -06:00
Houjun Tang
c1b3f0e02f
Add hdf5-vol-async v1.3 (#32634) 2022-09-14 04:21:48 -06:00
Adam J. Stewart
ddd18351a1
py-pytorch-lightning: add v1.7.6 (#32644) 2022-09-14 02:09:58 -06:00
Adam J. Stewart
ce56cb23fe
py-tokenize-rt: add missing setuptools dependency (#32639) 2022-09-14 10:04:03 +02:00
Jonas Thies
8d2cd4a620
phist: add v1.9.5 (#32621) 2022-09-14 09:46:09 +02:00
Erik Schnetter
9543716d81
berkeley-db: Correct TLS auto-detection (#32592) 2022-09-13 22:13:50 -06:00
Adam J. Stewart
93c39464e3
json-glib: add pkgconfig dependency (#32638) 2022-09-13 21:18:55 -06:00
Adam J. Stewart
cb323b1f55
graphite2: fix build on macOS (#32636) 2022-09-13 21:16:59 -06:00
João Seródio
9f72962dd1
New package: py-qiskit-nature (#32628) 2022-09-13 21:16:38 -06:00
Robert Underwood
9e5f3f96dd
add ability to disable werror for rocksdb (#32618)
* add ability to disable werror for rocksdb
* Update var/spack/repos/builtin/packages/rocksdb/package.py

Co-authored-by: Robert Underwood <runderwood@anl.gov>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-09-13 19:45:56 -06:00
Jonas Thies
4654d66905
packages/phist: new version 1.10 (#32581)
* packages/phist: new version 1.10

* fix (and narrow) conflicts, thanks @glennpj
2022-09-13 17:21:46 -05:00
Ondřej Čertík
463c5eacca
Add libraqm package; enable in py-pillow (#32619)
* Add libraqm package

* py-pillow: Add optional raqm dependency/variant

* Use sha256

* Use " instead of '

* Use more explicit import

* Only add raqm from @8.4.0:

* Make the docstring shorter to satisfy flake

* Add conflict, silence warning, adjust version

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-09-13 14:13:57 -06:00
Aurelien Bouteiller
83d6aff03a
Parsec: v3.0.2209 (#32617)
Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>

Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>
2022-09-13 13:33:56 -06:00
Carlos Bederián
3b46a0bffe
gromacs: add 2022.3 (#32624) 2022-09-13 12:41:57 -06:00
Chris White
937b576b5b
fix depends on versioning (#32626) 2022-09-13 10:29:21 -07:00
John W. Parent
53a7b49619
Windows rpath support (#31930)
Add a post-install step which runs (only) on Windows to modify an
install prefix, adding symlinks to all dependency libraries.

Windows does not have the same concept of RPATHs as Linux, but when
resolving symbols will check the local directory for dependency
libraries; by placing a symlink to each dependency library in the
directory with the library that needs it, the package can then
use all Spack-built dependencies.

Note:

* This collects dependency libraries based on Package.rpath, which
  includes only direct link dependencies
* There is no examination of libraries to check what dependencies
  they require, so all libraries of dependencies are symlinked
  into any directory of the package which contains libraries
2022-09-13 10:28:29 -07:00
Cameron Stanavige
251d86e5ab
unifyfs & gotcha: new releases (#32625)
UnifyFS:
- Add 1.0 release
- Deprecate older, unsupported versions
- Set fortran variant to true by default
- Update gotcha and mochi-margo dependency versions for unifyfs@1.0
  and unifyfs@develop
- Add conflict of unifyfs with libfabric 1.13.* versions
- Update configure_args to use helper functions

GOTCHA: Hasn't been under active development for a couple years but
the develop branch has some fixes UnifyFS uses. To avoid having
UnifyFS v1.0 depend on a develop branch of a dependency, this creates
a new release in the Gotcha Spack package based on the most recent
commit of the develop branch.
2022-09-13 10:53:11 -06:00
Cory Bloor
633a4cbd46
rocsparse: add spack build test (#31529)
* rocsparse: add spack build test

* Fix Navi 1x patch for ROCm 5.2

* Remove bench variant and other cleanup

* Fix style
2022-09-13 08:42:42 -07:00
Jordan Ogas
3e331c7397
charliecloud: deprecate old versions (#32462)
* tidy, deprecate old versions

* bump python

* begrudgingly apply less readable style

* adjust comment spacing

* apply ghastly multiline function arguments
2022-09-13 09:25:55 -06:00
Brian Van Essen
2d895a9ec3
Added 2.6.0 version to NVSHMEM package. Added new variant for GPU (#32622)
initiated support experimental feature.
2022-09-13 08:14:04 -06:00