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Author SHA1 Message Date
scheibelp
95850a7a5e report error if failed process captures stderr (#9293) 
When a Spack Executable was configured to capture stderr and the
process failed, the error messages of the process were discarded.
This made it difficult to understand why the process failed. The
exception is now updated to include the stderr of the process when
the Executable captures stderr.
 2018-09-19 17:29:15 -07:00
Christoph Junghans
7b2b2fb969 sw4lite: add v1.1 (#9289) 2018-09-19 13:30:28 -06:00
Adam J. Stewart
133dd7a4ac Fix version parsing for cistem package (#9260) 
Adds 'code' to the list of suffixes that are excluded from version
parsing of URLs, such that if a URL contains the string
'cistem-1.0.0-beta-source-code', a version X will substitute in to
produce a URL with cistem-X-source-code ('source' was already excluded).
The 'cistem' package version is updated to make use of this (and fix
a fetching bug with the cistem package). A unit test is added to check
this parsing case.
 2018-09-18 19:29:18 -07:00
sknigh
467d501060 sst-macro package: add versions and variants (#9271) 
Added variants for: mpi support, clang skeletonizer, building as
static and/or shared, and more.
 2018-09-18 19:06:13 -07:00
Geoffrey Lentner
3f04ebf600 hadoop package: fix url and checksum (#9263) 2018-09-18 18:49:52 -07:00
Geoffrey Oxberry
c971f6f1eb apple-libunwind: update path to library (#9265) 2018-09-18 18:48:53 -07:00
Levi Baber
d14971b061 new package: rclone (#9268) 2018-09-18 18:39:07 -07:00
Howard Pritchard
21884d804f libhio: add patch for 1.4.1.2 release (#9270) 
Turns out that there was a configury problem in libhio
which caused issues building the package on non-cray
systems, aka when using mpicc and friends.

Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
 2018-09-18 17:26:34 -06:00
Christoph Junghans
41de79a1b6 xsbench: added v18 (#9269) 2018-09-18 14:07:37 -06:00
Christoph Junghans
5135f03c03 Packages/candle benchmarks (#9266) 
* candle-benchmarks: added v0.1

* ecp-proxy-apps: v1.0 now depends on candle-benchmarks@0.0
 2018-09-18 13:02:03 -06:00
Douglas Duckworth
842d754338 star - added latest versions with shasum (#9257) 
* star - added latest versions with shasum

* star - added latest versions with shasum
 2018-09-16 15:44:33 -05:00
Geoffrey Oxberry
f9aed03e83 coinhsl: add @2015.06.23, explain versions, SHA256 (#9258) 2018-09-16 15:03:26 -05:00
Pramod Kumbhar
50378c15a9 Update rdma-core : new version and conflict with intel (#9255) 
* Update rdma-core : new version and conflict with intel

* address review comments
 2018-09-15 19:42:45 -05:00
toffer93
b3bdf92f26 changed to new install_tree formalism (#9181) 2018-09-15 09:40:50 -05:00
Matthias Diener
4942237278 gdb: add lzma support by default (#9247) 
This is required at least on RedHat/Fedora.

Many (most?) other people distribute gdb with this support enabled:
http://tomszilagyi.github.io/2018/03/Remote-gdb-with-stl-pp
https://bugzilla.redhat.com/show_bug.cgi?id=1596490
 2018-09-15 09:06:16 -05:00
Levi Baber
3f9fc0f765 breakdancer: fix several issues (#9251) 
* add perl dependencies
* put bam2cfg in path
* fix perl dir
 2018-09-14 20:11:34 -07:00
Miles Perry
301643bdc4 Feature/py picrust (#9184) 2018-09-14 17:24:17 -07:00
Michael Kuhn
c2f6c98ed9 rdma-core: Fix missing pkg-config dependency (#9195) 
rdma-core requires pkg-config, otherwise libnl can not be found.
 2018-09-14 17:21:05 -07:00
Justin Stanley
b09ece58f6 jdk: added 10.0.2_13 (#9203) 2018-09-14 17:17:32 -07:00
Jon Rood
8f80ee7a40 Updating amrvis to allow building with profiling support. (#9204) 
* Updating amrvis to allow building with profiling support.
* Setting MPI default to true.
 2018-09-14 17:16:35 -07:00
Stephen Hudson
ae1420bffc Update py-libensemble package to v0.3.0 (#9210) 2018-09-14 17:15:31 -07:00
Stephen McDowell
ea3c59ed37 add eigen@3.3.5 (#9212) 2018-09-14 17:14:46 -07:00
Geoffrey Oxberry
affea920cf hypre: patch +shared@2.13.0: on darwin (#9220) 2018-09-14 17:14:30 -07:00
snehring
fa5bf11f16 plumed: updating plumed to latest version (#9227) 2018-09-14 17:13:22 -07:00
Sergey Kosukhin
a9c434d7d7 Build Python 3.7 with external libffi. (#9245) 2018-09-14 17:07:13 -07:00
Stephen McDowell
0b800720b1 add opencv@3.4.3 (#9213) 2018-09-14 17:05:05 -07:00
Stephen McDowell
4c41413550 patch flann // gcc // cmake@3.11+ (#9214) 
See: https://github.com/mariusmuja/flann/issues/369
 2018-09-14 17:01:58 -07:00
Abhinav Bhatele
055b0a442c Charmpp: rename charm to charmpp according to ++ conventions (#9216) 
* Charmpp: rename charm to charmpp according to ++ conventions
* modify packages that depend on charmpp
 2018-09-14 17:01:07 -07:00
Levi Baber
e07aef88f8 py-spectra: new version (#9224) 2018-09-14 16:59:50 -07:00
Mario Melara
5b9cbb518a OpenCoarrays: update v2.2.0 (#9215) 
This commit adds a patch that prevents the package from hanging. The package would hang because CMakeLists would look for a system MPI. This patch changes the behavior.
 2018-09-14 16:59:19 -07:00
Christoph Junghans
9661748900 miniamr: added v1.4.1 (#9225) 2018-09-14 16:56:59 -07:00
Adam J. Stewart
cca6b673db py-h5py: add version 2.8.0 (#9231) 2018-09-14 15:56:44 -07:00
Justin Stanley
8276256875 portcullis: new package starting at 1.1.2 (#9218) 2018-09-14 15:55:58 -07:00
Abhinav Bhatele
3bb12e3804 miniQMC: add newer releases and ecp-proxy-app tag (#9233) 2018-09-14 15:54:21 -07:00
Geoffrey Oxberry
69a9a3291a ipopt: add debug variant (#9223) 2018-09-14 15:53:25 -07:00
Geoffrey Oxberry
a76aa36481 hypre: add debug variant (#9222) 2018-09-14 15:53:06 -07:00
Levi Baber
62208afdb9 py-multiqc: needs newer py-spectra (#9226) 2018-09-14 15:52:29 -07:00
Levi Baber
3c33b5efef py-networkx: new version (#9241) 2018-09-14 15:52:02 -07:00
Levi Baber
617ff8f125 py-decorator: new version (#9240) 2018-09-14 15:51:43 -07:00
Levi Baber
49aed4584b py-markdown: fix url and hashes (#9235) 2018-09-14 15:51:20 -07:00
Levi Baber
f52812e571 perl-gdgraph-histogram: new package (#9250) 2018-09-14 15:50:18 -07:00
Ken Raffenetti
881af613b3 bolt: new package starting at 1.0b1 (#9253) 2018-09-14 15:49:36 -07:00
Justin Stanley
31da752402 metasv: add required dependencies (#9254) 
* add runtime deps
* revert to strict dep versions
 2018-09-14 15:49:11 -07:00
Ken Raffenetti
17d4005a4f argobots: new package starting at 1.0b1 (#9238) 2018-09-14 15:48:40 -07:00
Justin Stanley
dda27fc0d1 rmats: new package starting at 4.0.2 (#9243) 
* new package starting at 4.0.2
 2018-09-14 14:54:26 -07:00
Douglas Duckworth
716ed92e32 motioncor2 - added version 1.1.0 and removed old, unlisted versions (#9229) 2018-09-14 13:57:22 -07:00
Matthias Diener
36f396ad5b gdb: add version 8.2 (#9246) 2018-09-14 13:56:15 -07:00
Justin Stanley
ff6b9b99fa gatk: new version (#9202) 
* gatk: added 4.0.8.1, fixed binary install
* gatk: fix flake8 conflict
* gatk: improve comments and modify install
 2018-09-14 13:55:52 -07:00
Justin Stanley
451328d6e6 mxnet: added 1.3.0 (#9236) 
* add version 1.3.0
* change build parameters, install process
  * mxnet will not compile against spack's nnvm and dmlc so we must use
    the distributions provided by the source package.
* also removed 'bin' installation as mxnet is just a shared library.
* improve BLAS linking
* remove unnecessary args
* added variant for python bindings
 2018-09-14 11:01:30 -07:00
sknigh
24dd24600c Added Kibana package, added Elasticsearch to 6.4.0 (#9239) 
* Added kibana, updated elasticsearch
* Update elastic search to 6.4
 2018-09-14 10:50:20 -07:00