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8,120 Commits 246 Branches 186 Tags
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Commit Graph

5267 Commits

Author SHA1 Message Date
Michael Kuhn
0d624eac55 lua: Build a shared library (#6008) 
Patch is inspired by Arch Linux and Homebrew.
 2017-11-01 17:10:14 -06:00
Yifan Zhu
f3af8272f5 r-circlize: new package (#6087) 2017-11-01 17:08:46 -06:00
lingnanyuan
ef240f59b8 r-alsace: Create new package. (#6064) 2017-11-01 17:04:56 -06:00
Yifan Zhu
26ade0c9ae r-globaloptions: new package (#6068) 2017-11-01 17:04:38 -06:00
lingnanyuan
a05cca49d8 r-affycoretools: Create new package and its dependency r-ff. (#6082) 
* r-ff: Create new package

* r-affycoretools: Create new package.

* r-ff: update url.
 2017-11-01 17:04:17 -06:00
lingnanyuan
541818ed06 r-agimicrorna: Create new package. (#6083) 2017-11-01 17:03:48 -06:00
Yifan Zhu
616a43b76d r-complexheatmap: created new package (#6084) 2017-11-01 17:03:30 -06:00
Yifan Zhu
ebff5086d7 r-shape: created new package (#6086) 2017-11-01 17:03:15 -06:00
Yifan Zhu
7fb6fbea54 r-pmcmr: new package (#6085) 2017-11-01 17:02:58 -06:00
Brian Van Essen
0c075b4923 Opencv eigen (#6014) 
* Added a package for the MDAnalysis toolkit.

* Changed dependency for the eigen library to not include support for
multiple-precision (arbitrary-precision) floating point arithmetic,
since OpenCV does not support these data types.

* Fixed incorrect implementation
 2017-11-01 13:50:06 -07:00
Mark Grondona
165e6bfe5f flux: update flux-core to v0.8.0 (#5914) 
* dockbook: remove update to dependent environment

Remove override of setup_dependent_environment in both docbook-xml
and docbook-xsl, which seems to generate a warning from spack about
"Suspicious requests to set or unset 'XML_CATLOG_FILES' found."

* flux: update version/dependencies to 0.8.0

Update flux-core to v0.8.0. Clean up dependencies and remove unneeded
extra invocation of ./autogen.sh when building from @master.

* flux: modify environment for Lua tests

Modify Spack environment to add `./?.lua` to LUA_PATH so that
fluxometer.lua can be found by tests during `make check` run
from `spack install --tests all flux`

* flux: fix broken flux version when on master

When building @master with spack, the flux version test from
`make check` fails because spack is using a shallow clone. Add
a setup section for @master that calls git pull --depth=50 --tags
to pull down tags and (hopefully) enough information for git-describe
to work properly.
 2017-11-01 08:53:37 -07:00
Satish Balay
445ffc46a1 mfem does not use cmake for builds [anymore] - so remove code corresponding to this dependency. (#6073) 
This enables mfem build on OSX [with xcode/clang compilers]
 2017-11-01 08:52:03 -07:00
Elsa Gonsiorowski
b53adc90f7 MACSio and JSON-CWX packages (#6018) 2017-10-31 19:07:00 -06:00
Patrick Gartung
8a812294e0 Preinstall some llvm shared libraries so tblgen will work. (#5988) 2017-10-31 18:34:33 -06:00
Yifan Zhu
0ecef7d7f8 r-somaticsignatures: created new package (#6065) 2017-10-31 18:31:06 -06:00
lingnanyuan
1ec8f6ea3f r-nloptr: Create new package. (#6063) 2017-10-31 18:30:49 -06:00
lingnanyuan
cfb685aa32 r-ptw: Create new package. (#6062) 2017-10-31 18:29:45 -06:00
lingnanyuan
aa1808c9a1 r-iso: Create new package. (#6061) 2017-10-31 16:17:53 -06:00
lingnanyuan
6af19477ef r-nnls: Create new package. (#6060) 2017-10-31 16:17:36 -06:00
lingnanyuan
77b29288e6 r-als: Create new package. (#6059) 2017-10-31 16:17:21 -06:00
Yifan Zhu
10fcd9382a r-ggbio: new package (#6058) 2017-10-31 16:17:07 -06:00
Bill Williams
f5e68879db Fix spack build for RAJA: master requires submodules (#6052) 
* Fix spack build for RAJA: master requires submodules

* Rename version: git to develop
 2017-10-31 15:08:32 -06:00
Scott Wittenburg
3cb2d5341d Fix incorrect checksum value for adios2 tarball (#6054) 2017-10-31 15:08:08 -06:00
lingnanyuan
6427406fc6 r-gviz: Create new package. (#6043) 2017-10-31 15:06:30 -06:00
Brian Homerding
8a86016bef Added fftw dependency (#6057) 2017-10-31 14:33:01 -06:00
Brian Homerding
180dcfc652 sw4lite: Added -lgfortran and set to serial build (#6055) 
* Added -lgfortran and set to serial build

* Update package.py
 2017-10-31 14:29:06 -06:00
Christoph Junghans
d98e337706 ecp-proxy-suite: add nekbone and candle-benchmarks (#6053) 2017-10-31 13:11:08 -06:00
Christoph Junghans
182c11dd92 nekbone: add v17 (#5978) 2017-10-31 10:47:24 -06:00
Christoph Junghans
178107699c candle-benchmarks: initial commit (#6020) 2017-10-31 09:11:04 -06:00
Christoph Junghans
ea35f49cdd flang: fixed a typo (#6048) 2017-10-31 14:21:29 +01:00
Nils Deppe
4997291bf4 Add v3.2 of Blaze library (#5992) 2017-10-31 08:33:55 +01:00
George Hartzell
e69542c019 Fix tarball URL's for htslib (#5993) 
A recent update (#5907) to htslib added a different URL for an old
version of htslib.

Now the package is using that URL as the pattern for the newer
versions too.

I have a vague memory of running into this before, that it's a known
issue.

This fixes it by adding an explicit `url_for_version` routine.
 2017-10-30 22:49:52 -06:00
David Gardner
10b27ec788 sundials: update to v3.0.0 (#6004) 2017-10-30 22:49:13 -06:00
Jon Rood
50d932d9f1 Merging netcdf dependency lines in trilinos into one line for better coverage. (#5990) 2017-10-30 22:48:21 -06:00
Satish Balay
f5863d6708 superlu_dist: update to v5.2.2 (#6024) 2017-10-30 22:46:41 -06:00
Yifan Zhu
a31a1fef28 r-progress: new package (#6034) 
* r-progress: created new package

* added version
 2017-10-30 22:43:57 -06:00
Yifan Zhu
a97068a861 r-prettyunits: created new package (#6033) 2017-10-30 22:43:20 -06:00
lingnanyuan
6ddba08434 r-seqinr: Update version to 3.4-5 (#6032) 2017-10-30 22:42:51 -06:00
Yifan Zhu
8cc3bcb649 r-ggplot2: dependecy r-scales version should be 0.4.1: (#6031) 2017-10-30 22:42:31 -06:00
Yifan Zhu
fb072d1472 r-scales: added dependencies and version 0.5.0. (#6030) 
* r-scales: Update url.

* r-scales: added version 0.5.0 and dependencies
 2017-10-30 22:42:05 -06:00
lingnanyuan
7e4ac9a559 r-segmented: Update version to 0.5-2.2 (#6029) 2017-10-30 22:41:32 -06:00
Yifan Zhu
34c6ff10e9 r-ggally: new package (#6036) 
* r-ggally: created new package

* r-ggally: version modified
 2017-10-30 22:41:12 -06:00
lingnanyuan
65785cc3f5 r-speedglm: Create new package. (#6035) 2017-10-30 22:40:48 -06:00
lingnanyuan
a4138b6041 r-alpine: Create new package. (#6037) 2017-10-30 22:40:25 -06:00
Yifan Zhu
22f9125164 r-ensembldb: created new package (#6038) 2017-10-30 22:39:54 -06:00
Yifan Zhu
2a7027e2cc r-pcamethods: created new package (#6041) 2017-10-30 22:39:29 -06:00
Yifan Zhu
cbb433655c r-proxy: created new package (#6039) 2017-10-30 22:39:05 -06:00
lingnanyuan
8271434632 r-backports: Create new package. (#6040) 2017-10-30 22:38:35 -06:00
lingnanyuan
81d3c9fdc6 r-biovizbase: Create new package. (#6042) 2017-10-30 22:38:10 -06:00
Abhinav Bhatele
b37c8fef74 ecp-proxy-apps: release number changed to 1.0 (#6049) 2017-10-30 22:37:09 -06:00