Commit Graph

3763 Commits

Author SHA1 Message Date
Adam J. Stewart
827ebe280d Add latest version of NCO (#3978) 2017-04-25 12:10:55 -05:00
Adam J. Stewart
18dd9c0860 Add patch to gettext to fix parallel make check (#3981) 2017-04-25 12:10:35 -05:00
Christoph Junghans
54bfa888b9 legion: add mpi interoperability and shared libs (#3959)
* legion: add mpi inoperability

* legion: make +mpi the default

* legion: add shared variant
2017-04-25 12:06:05 -05:00
健美猫
dd5f4cb251 A new package: CNTK. (#3578) 2017-04-25 06:40:23 -05:00
serbanmaerean
eef7d17946 Add global arrays package (#3970)
* Added magma package

* Incorporated Serban's change

* globalarrays: add global arrays package to Spack.

* globalarray: remove extreaneous comment from package file
2017-04-24 16:04:40 -07:00
Brian Van Essen
00fdbe81bc Caffe (#3948)
* Added a package for the MDAnalysis toolkit.

* Added the hash for the 1.0 release of caffe and put in a conflict
statemet indicating that protobuf requires a c++11 compiler.

* Changed minimum version number.

* Tweaked the minimum version number.

* Fixed flake8 error.
2017-04-24 13:32:27 -05:00
Gregory Lee
67bf71630b Do not require license for new Intel libraries (#3931)
* new Intel libs do not require license to install

* updated Intel library package URLs

* disable license_required for new Intel libraries
2017-04-23 08:58:47 -05:00
Milton Woods
b2155a5682 Update ECWMF packages: grib-api, libemos and magics (#3901)
* grib-api: add version 1.21.0

* libemos: add version 4.4.7 and allow choice of eccodes or grib-api

* magics: add version 2.32.0

* libemos: add description for eccodes variant
2017-04-23 07:56:47 -05:00
Milton Woods
980ffcdcec eccodes: new package for encoding and decoding meteorological data (#3900)
* eccodes: new package for encoding and decoding meteorological data

* eccodes: remove line breaks from package docstring

* eccodes: simplify names of variants

* eccodes: give a description for each variant

* eccodes: use succinct code for cmake_args

* eccodes: found extra dependency for python variant

* eccodes: add URL for a list of available releases
2017-04-23 07:55:51 -05:00
Adam J. Stewart
4e17ae911b Hack to fix python dependency ranges (#3938)
* Hack to fix python dependency ranges

* Flake8
2017-04-22 17:31:50 -05:00
George Hartzell
281ba99460 Add version info for emacs@25.2 (#3957) 2017-04-22 16:01:17 -05:00
Denis Davydov
94a0cca080 add Intel mpi package and add MPI wrappers to Intel parallel studio (#3905)
* intel-mpi: add new package

* fix hashes

* fix typo

* flake8

* add install

* blank line

* error

* add bin64

* fix MPI wrappers in intel-parallel-studio

* add missing I_MPI_FC

* use shorter hashes
2017-04-22 07:30:51 -05:00
Matthew Krafczyk
16a7b27a9e more fixes for use of setuptools in python packages
- py-setuptools is required by py-yt for importing yt in jupyter notebooks.
- add two dependencies needed for python 2.7
- add the py-subprocess32 package
2017-04-21 23:35:02 -07:00
Paul Hopkins
8b92908ab4 Fix setuptools handling in Python packages.
- add setuptools dependencies to packages that need it.
- remove setuptools from packages that do not need it.
2017-04-21 23:35:02 -07:00
Todd Gamblin
9f0b94b4e1 PythonPackage builds flat installs instead of egg directories.
- Spack doesn't need eggs -- it manages its own directories

- Simplify install layout and reduce sys.path searches by installing all
  packages flat (eggs are deprecated for wheels, and this is also what
  wheels do).

- We now supply the --single-version-externally-managed argument to
  `setup.py install` for setuptools packages and setuptools.

- modify packages to only use setuptools args if setuptools is an
  immediate dependency

- Remove setuptools from packages that do not need it.

  - Some packages use setuptools *only* when certain args (likeb
    'develop' or 'bdist') are supplied to setup.py, and they specifically
    do not use setuptools for installation.

  - Spack never calls setup.py this way, so just removing the setuptools
    dependency works for these packages.
2017-04-21 23:35:02 -07:00
Adam J. Stewart
2a04fdca52 Convert LLVM to CMakePackage, update cmake dependency version (#3940)
* Convert LLVM to CMakePackage, update cmake dependency version

* Remove unused import
2017-04-21 18:38:07 -05:00
George Hartzell
a90e34f4ca Add info for nextflow@0.17.3 (#3947) 2017-04-21 18:28:13 -05:00
Todd Gamblin
c0356182b6 Remove all test variants (#3923) 2017-04-21 15:18:56 -07:00
Denis Davydov
6017a6a6fe netcdf: fix missing CC = mpicc ; this makes it work with Intel MPI (#3942) 2017-04-21 14:43:27 -07:00
Jeffrey Salmond
a2135dff49 add cppcheck new version (#3935) 2017-04-21 12:54:27 -05:00
Adam J. Stewart
46d0ca9d01 Ensure that tests are optional (#3922) 2017-04-21 12:15:39 -05:00
Adam J. Stewart
5250e8ee89 Fix HPL build, convert to MakefilePackage (#3777)
* Fix HPL build, convert to MakefilePackage

* Flake8 fix

* Fix: spec -> self.spec

* Properly query for system libraries

* Update Intel-MKL as well

* Recurse in system libs, fix MKL path, fixes lapack_libs
2017-04-21 12:11:29 -05:00
Javier
41efada340 Adding new python package: py-python-gitlab (#3936) 2017-04-21 11:47:52 -05:00
Jimmy Tang
f86ed1e34d Fix for llvm 4.0.0 on centos (#3904)
* Fix for llvm 4.0.0 on centos

This addresses https://github.com/LLNL/spack/issues/3791

* Only enable this option if on linux

* Change condition to satisfy standard
2017-04-21 11:29:41 -05:00
Bruno Turcksin
a017c5e2ef Add boost 1.64.0 (#3934) 2017-04-21 10:06:31 -05:00
Brian Van Essen
011442fd37 Keras 2.0.3 (#3927)
* Added a package for the MDAnalysis toolkit.

* Added has for Keras version 2.0.3
2017-04-20 17:48:30 -05:00
Michael Kuhn
f520c0dd8d Add vampirtrace (#3911)
Since scorep does not support all use cases yet, vampirtrace is still
useful in some circumstances.
2017-04-20 15:01:06 -05:00
Adam J. Stewart
e2e6dea9b3 Gettext test suite fails when run in parallel (#3921) 2017-04-20 13:06:11 -05:00
Adam J. Stewart
f0a6ead19c Flake8 2017-04-20 12:48:02 -05:00
Adam J. Stewart
9ca0d1f5f0 Remove all test variants 2017-04-20 12:13:11 -05:00
Adam J. Stewart
9bd6d21322 Add variant to mvapich2 to set size of rank bits (#3886) 2017-04-19 21:31:21 -07:00
Adam J. Stewart
3c0c0f3457 binutils should link to Spack zlib installation (#3914) 2017-04-19 21:29:27 -07:00
Adam J. Stewart
f51af42bc6 Add latest version of HOOMD-blue (#3889) 2017-04-19 21:24:32 -07:00
Adam J. Stewart
f4858cb7a7 Rework Spack's Mercurial support (#3834)
* Add tests to mercurial package

* Add support for --insecure with mercurial fetching

* Install man pages and tab-completion scripts

* Add tests and latest version for all deps

* Flake8 fix

* Use certifi module to find CA certificate

* Flake8 fix

* Unset PYTHONPATH when running hg

* svn_fetch should use to svn-test, not hg-test

* Drop Python 3 support in Mercurial

Python 3 support is a work in progress and isn't currently
recommended:

https://www.mercurial-scm.org/wiki/SupportedPythonVersions

* Test both secure and insecure hg fetching

* Test both secure and insecure git and svn fetching
2017-04-19 18:59:04 -07:00
Jimmy Tang
53763f7698 Sox (#3908)
* Initial add of flac

* Initial add of id3lib

* Initial add of the opus codec

* Initial add of sox audio processing tools

* Cleanup spec files to be inline with current standard

* Fix pep8 compliance

* Remove un-needed configuration
2017-04-19 16:21:13 -05:00
George Hartzell
a3dff31b07 Add info for sqlite@3.18.0 (#3913) 2017-04-19 16:15:21 -05:00
Mark Olesen
22a966d010 add lines missed in rebase (adios +bzip2) (#3907) 2017-04-19 09:36:46 -05:00
Milton Woods
9b6b91b0b9 ncl: capture more dependencies (#3902)
* ncl: add depends_on statements for bison, flex and libiconv

* ncl: depends on flex for building and linking

* ncl: links with -ll, so requires flex with variant '+lex'

* ncl: depends on szip; external hdf5 may not provide it
2017-04-19 06:55:22 -05:00
Milton Woods
b00a12565c pango: depends on libxft when +X, disable libxft support when ~X (#3899) 2017-04-19 06:54:06 -05:00
George Hartzell
13fef18244 Ensure sbin is prepended to PATH in modulefiles (#3843) 2017-04-19 06:51:04 -05:00
Denis Davydov
eaefaaba5b espresso: add 6.1.0 (#3881)
* espresso: fix missing dependency on elpa, add 6.1.0

* override default libs of elpa to get shared always
2017-04-19 12:34:42 +02:00
Milton Woods
13911f1b46 gdbm: GNU dbm package for manipulating hashed databases (#3895) 2017-04-19 09:32:00 +02:00
George Hartzell
a0b19d50c5 Disable parallel builds for vim (#3893)
* Disable parallel builds

The install step creates a bunch of links to the vim binary, e.g.
`view`.  When run with -j greater than 1 there are silent failures.

Running w/out parallelism seems to fix it.

* Only constrain the install phase to be -j 1

Thanks @adamjstewart!
2017-04-18 20:46:09 -05:00
Javier
687f5e78ae Adding new python package: py-simplejson (#3883)
* Adding new python package: py-simplejson

* Adding setuptools dependency

* Fixing typo
2017-04-18 12:02:55 -05:00
Christoph Junghans
2a3fc6c404 charm: set sane default (#3865)
see https://github.com/LLNL/spack/pull/3852#pullrequestreview-32996651
for details
2017-04-18 12:02:41 -05:00
Denis Davydov
ce714b5641 ocotpus and arpack-ng: fix arpack bug and add libs to arpack-ng (#3875)
* ocotpus and arpack-ng: fix arpack bug and add libs to arpack-ng

also rename the variant to be consistent with other packages

* fix a bug

* flake8
2017-04-18 11:50:10 -05:00
George Hartzell
afbe81b455 Add version info for git-lfs v2.0.2 (#3885) 2017-04-18 11:48:53 -05:00
Kelly (KT) Thompson
fad4ce21cc Provide version 3.8.0 of CMake. (#3882) 2017-04-18 10:59:59 -05:00
Javier
7ed99a4c86 Adding new package: sas (#3877) 2017-04-18 07:07:07 -05:00
Denis Davydov
5558bec14e ape: constrain libxc version (#3876) 2017-04-18 07:03:48 -05:00