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Author SHA1 Message Date
Tom Scogland
8859a09cd2 handle explicit when requesting to install already installed packages 2016-05-16 08:08:40 -07:00
Tom Scogland
4acdfeae61 track whether a package was installed "explicitly" 
Adds a new attribute in the database to track whether a package was
installed explicitly or not, where explicitly is the user running `spack
install <package>` and implicitly is it being installed as a dependency.
It also adds arguments to `spack find` to find these packages such that
it should be possible to query the packages that were installed
implicitly and are not currently depended upon any longer.
 2016-05-16 08:08:40 -07:00
Todd Gamblin
53df9fbb4f Merge pull request #959 from davydden/bugfix/doxygen_ghostscript_graphviz 
Bugfix/doxygen ghostscript graphviz
 2016-05-16 00:12:59 -07:00
Todd Gamblin
0ffa959044 Merge pull request #957 from glennpj/turbomole_subprocess 
Updated turbomole package file.
 2016-05-16 00:12:19 -07:00
Denis Davydov
0fbf70d95d indentation fixes 2016-05-15 23:37:09 +02:00
Denis Davydov
459c647bc9 doxygen: add graphviz variant; enable flex and bison on OSX and they build fine 2016-05-15 19:43:01 +02:00
Denis Davydov
a045154b5e graphviz: add missing dependency and fix installation on darwin 2016-05-15 18:34:50 +02:00
Denis Davydov
21d4f3a356 ghostscript: url was changed upstream 2016-05-15 18:33:06 +02:00
Glenn Johnson
fffc2d2765 Updated turbomole package file. 
This PR updates the turbomole package file but does not introduce any
new funtionality. The updtes are:
- use spack interface for subprocess.PIPE and subprocess.Popen
- clean up based on flake8
- remove some extra whitespace
 2016-05-14 19:33:45 -05:00
Todd Gamblin
4a6ec6377d Merge pull request #940 from gzagaris/feature/doxygen-version-1.8.11 
Add doxygen version 1.8.11
 2016-05-13 10:10:23 -07:00
Todd Gamblin
6ee21727de Merge pull request #949 from davydden/bugfix/openblas 
openblas: use spack_cc/spack_f77 and add a note on compiler mixing
 2016-05-13 10:00:57 -07:00
Denis Davydov
8db35ab9a2 openblas: use spack_cc/spack_f77 and add a note on compiler mixing 2016-05-13 17:28:30 +02:00
George Zagaris
e763eeacdd fix format in doxygen/package.py 2016-05-12 23:25:10 -07:00
Todd Gamblin
5e13bba068 Fix #941: add copyright to new package files. 
- also reworded the boilerplate a bit.
 2016-05-12 10:30:13 -07:00
Todd Gamblin
d9cc1f85a5 Merge pull request #932 from adamjstewart/features/elk 
Elk: Use new openmp_flag and mpi attributes
 2016-05-12 09:05:41 -07:00
Adam J. Stewart
03307f91df Fix bug when compiling elk~mpi 2016-05-12 10:27:05 -05:00
Adam J. Stewart
3526d92660 Indentation fix 2016-05-12 10:27:05 -05:00
Adam J. Stewart
d7020434d9 Use new-ish blas_shared_lib and more flake8 fixes 2016-05-12 10:27:04 -05:00
Adam J. Stewart
e2e72b14b2 Use new openmp_flag and mpi attributes 2016-05-12 10:26:10 -05:00
George Zagaris
3ece0e7b76 Add doxygen version 1.8.11 2016-05-12 00:42:22 -07:00
Todd Gamblin
e7ced54369 Correct LLNL LGPL license template for clarity. 2016-05-11 21:22:25 -07:00
Todd Gamblin
14fe0b8ad2 Merge pull request #558 from adamjstewart/features/pgi 
Add Licensed Software Support
 2016-05-11 17:17:47 -07:00
Todd Gamblin
2dc49ee88d Merge pull request #938 from KineticTheory/pkg-moab 
Provide new package: MOAB
 2016-05-11 17:14:05 -07:00
Kelly (KT) Thompson
c5a19b57f7 Clean up formatting. 2016-05-11 16:33:57 -06:00
Kelly (KT) Thompson
8bec127a1d Attempt to fix formatting issues (flake8). 2016-05-11 14:00:44 -06:00
Kelly (KT) Thompson
9482ce1fce Remove some extraneous comments. 2016-05-11 12:39:20 -06:00
Kelly (KT) Thompson
e200a41d3d New package MOAB. 2016-05-11 12:34:33 -06:00
Adam J. Stewart
c043275f1b Final flake8 changes 2016-05-11 11:46:41 -05:00
Todd Gamblin
9cf5404bb7 Merge pull request #937 from davydden/features/unit_tests 
Features/package_test
 2016-05-11 09:42:00 -07:00
Adam J. Stewart
5879f8207f Flake8 formatting changes 2016-05-11 11:32:08 -05:00
Adam J. Stewart
ee7ec4fa66 Move all licensing support to pre/post_install hooks 2016-05-11 11:32:08 -05:00
Adam J. Stewart
19f4b27fd2 Add documentation for packaging of licensed software 2016-05-11 11:32:08 -05:00
Adam J. Stewart
8ea5e946a2 Add Allinea packages 2016-05-11 11:32:08 -05:00
Adam J. Stewart
8bcb812529 Allow multiple license symlinks 2016-05-11 11:32:08 -05:00
Adam J. Stewart
2a11cb8b76 Use global licenses with local symlinks 2016-05-11 11:32:08 -05:00
Adam J. Stewart
6906911e85 Allow license files to use different symbols for comments 2016-05-11 11:32:08 -05:00
Adam J. Stewart
b63d11d5b0 Formatting consistency 2016-05-11 11:32:07 -05:00
Adam J. Stewart
5cb45c253e Bug fix 2016-05-11 11:32:07 -05:00
Adam J. Stewart
1b997f10a8 Add set_up_license function 2016-05-11 11:32:07 -05:00
Adam J. Stewart
8cba8d6d1d Add default global variables for licensing information 2016-05-11 11:29:30 -05:00
Adam J. Stewart
240c0643f2 Add NAG Fortran compiler package 2016-05-11 11:27:11 -05:00
Adam J. Stewart
82ce798f41 Bug fix 2016-05-11 11:27:11 -05:00
Adam J. Stewart
2fb128fb34 Add PGI Compiler Package 2016-05-11 11:27:11 -05:00
Todd Gamblin
0216fa2a00 Simplify /etc/spack/modules.yaml formatting. 2016-05-11 09:05:24 -07:00
Todd Gamblin
fd5d89b61c Merge branch 'custom_modulefiles_from_config' of https://github.com/epfl-scitas/spack into epfl-scitas-custom_modulefiles_from_config 2016-05-11 08:59:23 -07:00
Todd Gamblin
eaf046c6a4 Merge pull request #936 from hegner/bugfix/configsections 
Improve error message for wrong config section names
 2016-05-11 08:58:33 -07:00
alalazo
bb4b6c8ee2 flake 8 : fixed checks 2016-05-11 17:02:36 +02:00
Denis Davydov
eba264fcd0 fix formatting 2016-05-11 16:11:34 +02:00
alalazo
78ae5d7723 Merge branch 'develop' of https://github.com/LLNL/spack into features/custom_modulefile_from_config 
Conflicts:
	lib/spack/spack/config.py
 2016-05-11 16:11:19 +02:00
alalazo
22bb0562fe Revert "flake8 : fixed all issues?" 
This reverts commit 71e49e289a.
 2016-05-11 16:09:47 +02:00