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Author SHA1 Message Date
Alexander Knieps
b73536b4ad Update to swipl package (#17173) 
* Added version 8.2.0, added dependency for documentation build, added variants for documentations

* Renamed variant '+man' to '+html'

Co-authored-by: Alexander Knieps <a.knieps@fz-juelich.de>
 2020-06-19 11:03:25 -05:00
Adam J. Stewart
b80d5e74e5 PyTorch: add v1.5.1 (#17167) 2020-06-18 17:24:38 -05:00
Adam J. Stewart
5a0c5de50b py-pandas: add v1.0.5 (#17161) 2020-06-18 17:24:27 -05:00
Adam J. Stewart
33e6d0f378 py-matplotlib: add v3.2.2 (#17160) 2020-06-18 17:24:14 -05:00
Massimiliano Culpo
6d9f0262de libjpeg-turbo: fixed sha256 (#17154) 2020-06-18 14:44:32 +02:00
lorddavidiii
68c13d76f9 arpack-ng: fix build with gcc@10: (#17131) 2020-06-18 14:43:52 +02:00
darmac
2a13bad8eb atop: fix ld error (#17150) 2020-06-18 14:42:52 +02:00
Sinan
1de20f00b6 arrayfire: added cudnn as a dependency when +cuda (#17146) 
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
 2020-06-18 11:20:17 +02:00
Omar Padron
82eb71cb95 Explicitly install setuptools in docker images (#17143) 2020-06-18 11:16:24 +02:00
Shintaro Iwasaki
910d258706 argobots, bolt: updates to package.py (#17117) 2020-06-18 11:11:59 +02:00
Itaru Kitayama
4fe78bceaa cube and libjpeg-turbo: added cube v4.5 and libjpeg-turbo v2.0.4 (#17132) 2020-06-18 10:40:54 +02:00
Axel Huebl
2fd3ab3c9c Fetching from urls: Error Message (#16434) 
* Fetching from urls: Error Message

Fix the error message when fetching from consecutive `urls` of a
package version. Each fail should show the currently failing URL,
not the first url.

Example multi-problem run that occured in real life:
```
==> 5821: Installing util-macros
curl: (28) Connection timed out after 10000 milliseconds
curl: (16) Error in the HTTP2 framing layer
curl: (22) The requested URL returned error: 403 Forbidden
==> Fetching https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2
==> Failed to fetch file from URL: https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2
    Curl failed with error 28
==> Fetching https://mirrors.ircam.fr/pub/x.org/individual/util/util-macros-1.19.1.tar.bz2
==> Failed to fetch file from URL: https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2
    Curl failed with error 16
==> Fetching http://xorg.mirrors.pair.com/individual/util/util-macros-1.19.1.tar.bz2
==> Failed to fetch file from URL: https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2
    URL https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2 was not found!
==> Fetching from https://www.x.org/archive/individual/util/util-macros-1.19.1.tar.bz2 failed.
==> Error: FetchError: All fetchers failed for spack-stage-util-macros-1.19.1-se2a2e74oyusj2r4esgcb7pr3qhh45ef
```

- `urls[0]`: HTTP2 layer error
- `urls[1]`: timeout
- `urls[2]`: missing file on mirror

* x.org: two more mirrors

x.org mirrors are a bit tricky, since many are out-of-sync or off.
A good package to test with is `util-macros`, which had a "recent"
release.
 2020-06-18 10:37:32 +02:00
Adam J. Stewart
1f85d6eceb Docs: fix rst link to spack ci (#17147) 2020-06-18 09:44:03 +02:00
Toyohisa Kameyama
58e20430b1 minimap2: fix a typo in the recipe (#17148) 2020-06-18 09:43:06 +02:00
Seth R. Johnson
1bb94f2913 glib: fix 2.56 build with python@2 (#17144) 
* glib: fix 2.56 build with python@2

* flake8
 2020-06-17 23:32:25 -05:00
Joseph Ciurej
c8199ece65 python: fix patch issue for 2.7.X, 3.7.X (#17140) 
* python: fixing patch issue for 2.7.X, 3.7.X versions (#17128)

* python: fixing the C/C++ 'distutils' patching for @3.7.0:3.7.1
 2020-06-17 23:30:41 -05:00
Greg Becker
5b59e883c1 cray module do not work without CRAY_LD_LIBRARY_PATH (#17031) 
Co-authored-by: Gregory Becker <becker33.llnl.gov>
 2020-06-17 15:53:30 -07:00
Adam J. Stewart
c0cdc00409 oneDNN: add v1.5.0 (#17137) 2020-06-17 16:01:46 -05:00
Michael Kuhn
f7008f37d4 slurm: Fix build with gcc@10: 
gcc@10: defaults to -fno-common, which breaks slurm up to version
20-02-1. For more details, see https://gcc.gnu.org/gcc-10/porting_to.html
 2020-06-17 13:42:00 -07:00
Sergey Kosukhin
01b277ad0f openmpi: options for local transport (#16831) 2020-06-17 14:41:24 -05:00
Chris White
506f31b7a7 axom conduit mfem build fixes (#17121) 
* honor global compiler flags

* Honor debug variant when using global compiler flags

* Add cppflags to c/cxx flags, clarify flag handling
 2020-06-17 12:43:47 -05:00
vvolkl
03880f5413 Split hepmc Into hepmc and hepmc3 (#16892) 2020-06-17 12:13:27 -05:00
Michio Ogawa
ad18933ef4 FrontISTR: various updates to the package (#17089) 
* Added maintainers
* Refined dependencies
* Changed git url
 2020-06-17 17:45:51 +02:00
Sergey Kosukhin
eca08c77e3 openmpi: fixes for NAG compiler (#17073) 
* openmpi: fixes for NAG compiler

* openmpi: more fixes
 2020-06-17 10:32:08 -05:00
Seth R. Johnson
e90c229dab Fix/clarify some trilinos variants/dependencies (#17006) 
- Parallel HDF5 isn't required -- the comment seems to be about a
  transitive dependency with pnetcdf.
- Boost usage should respect the variant, not automatically be reenabled
  when choosing DTK.
 2020-06-17 09:34:53 -05:00
takanori-ihara
eb5f1886b7 py-tensorflow: Update for use with Fujitsu compiler (#17088) 
* py-tensorflow: Update for use with Fujitsu compiler

* py-tensorflow: remove -march option

* fix flake8 error
 2020-06-17 08:00:36 -05:00
darmac
dc0dfe9220 New package: lynx (#17099) 2020-06-16 23:04:00 -07:00
Muhammad Haseeb
d2b745b3d6 lua: requires -ltermcap when building (#17108) 2020-06-16 22:55:46 -07:00
Fabian Brandt
494a523636 libnetworkit: add version 7.0 (#17111) 2020-06-16 22:44:43 -07:00
Ryan Mast
0c28d8932f helics: Add version 2.5.2 2020-06-16 22:43:27 -07:00
Seth R. Johnson
93fcca900f vecgeom: add version 1.1.7 (#17120) 2020-06-16 22:42:56 -07:00
h-denpo
fd8971feec Modified for Fujitsu compiler. (#17124) 2020-06-16 22:36:08 -05:00
Glenn Johnson
8e6f0c353c Add patch for older versions of py-tensorflow (#17122) 
Versions of py-tensorflow between versions 1.1 and 1.14 need a patch to
avoid an import error on the cloud package even if built without support
for the cloud package.
 2020-06-16 22:35:03 -05:00
Toyohisa Kameyama
6e467d13a4 mxnet: avoid GNU parallel shuffle without openmp. (#17095) 2020-06-16 22:24:38 -05:00
takanori-ihara
b0c73c3325 bazel: Update for use with Fujitsu compiler (#16860) 
* bazel: Update for use with Fujitsu compiler

* bazel: Fix for use with Fujitsu compiler

* bazel: Fix flake8 error

* bazel: add conflicts setting for use with Fujitsu compiler

* fix flake8 error

* fix flake8 error
 2020-06-16 22:18:04 -05:00
takanori-ihara
84e117b497 Add compiler option to use with Fujitsu compiler (#17067) 
* Add compiler option to use with Fujitsu compiler

* Fix flake8 error

* remove 1-1_fcc_tf_patch.patch

* fix flake8 error
 2020-06-16 21:59:20 -05:00
Axel Huebl
896a14af82 Doc: E4S Build Cache Link (#16986) 
Link to the E4S build cache in the according section of the docs.
 2020-06-16 15:53:34 -07:00
Geoffrey Oxberry
4652b217cf pango: add libffi, glib, and other dependencies (#12384) 2020-06-16 15:34:18 -07:00
Andrew W Elble
ff816f76b3 ruby: add version 2.7.1 (#17112) 2020-06-16 21:35:49 +02:00
Tom Payerle
4a948060cf VTK: add version 9.0.0; update Python dependency constraints (#17019) 
In Python 3.8, the reserved "tp_print" slot was changed from a function
pointer to a number, which broke the Python wrapping code in vtk@8
(causing "cannot convert 'std::nullptr_t' to 'Py_ssize_t'" errors in
various places).  This is fixed in vtk@9.0.0.

This patch:

1) adds vtk@9.0.0
2) updates depends_on constraints to only use python@3.8: for vtk@9:
   vtk@:8 depends on python@2, and vtk@8.0.1:8.9.9 depends on python@:3.7
3) Adds CMake flag VTK_PYTHON_VERSION=3 when using python@3 with vtk@9
 2020-06-16 11:33:35 -07:00
psakievich
dc31afe67d Yaml spec parsing corner case (#17101) 
* Catch yaml filename corner case in spec parser

* improved regex and remove redundant error checking

Co-authored-by: Gregory Becker <becker33@llnl.gov>
 2020-06-16 13:27:33 -05:00
Omar Padron
e816b66c94 fix docker image entrypoints (#17105) 
Also removes extraneous prompt and ssh handling logic.
 2020-06-16 14:11:13 -04:00
Joseph Ciurej
0095c4c25c python: fix distutils for python modules (e.g. matplotlib) with C and C++ source files (#16856) 
* python: adding a distutils fix to improve build compatibility for C++ extension modules (e.g. py-matplotlib)

* python: added C/C++ distutils patches for python@3.6:3.8
 2020-06-16 12:45:36 -05:00
Tomoki, Karatsu
4b48f70393 gobject-introspection: build sequentially when using the Fujitsu compiler. (#17092) 2020-06-16 14:51:29 +02:00
victorusu
0f484380f5 reframe: fix package bugs with v3.0 (#17104) 
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-06-16 13:49:47 +02:00
vvolkl
e28561241b ROOT: set LD_LIBRARY_PATH when ~rpath (#16899) 
Allow Spack to build with ROOT as an external dependency by setting
LD_LIBRARY_PATH: given that the external package was not built by
Spack, dependents would not be able to locate libraries using RPATHs
when running ROOT binaries.
 2020-06-15 23:31:41 -07:00
darmac
9f73e60ba9 Add new package: lzop (#17098) 2020-06-16 08:28:44 +02:00
John Jolly
8882dc0d96 chill: Update dependency versions 
Specified Python to be v2.7 only, as Python3 support is not currently
implemented in chill.

Update chill dependency versions for the following libraries to the
specific versions:

* rose:  v0.9.13.0
* bison: v3.4.2

Both rose and iegenlib are build time dependencies, but are also run
time dependencies. Added 'run' to the build type for both dependencies.
 2020-06-15 23:08:34 -07:00
Sergey Kosukhin
a492187973 hdf5: fix libtool files (#17009) 2020-06-15 23:05:46 -07:00
Andrew W Elble
7e322b3184 CUDA: remove preexisting log file before install (#17018) 
cuda: 10.1 and onward, installers will crash if /tmp/cuda-installer.log
exists

Try to help if user owns the file, otherwise try to provide useful
info. Clean up the file post-install to try to avoid the whole issue.
 2020-06-15 22:57:00 -07:00