Todd Gamblin
05fa302655
Replace github.com/llnl/spack with github.com/spack/spack ( #6142 )
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We moved to a new GitHub org! Now make the code and docs reflect that.
2017-11-04 17:08:04 -07:00
George Hartzell
e69542c019
Fix tarball URL's for htslib ( #5993 )
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A recent update (#5907 ) to htslib added a different URL for an old
version of htslib.
Now the package is using that URL as the pattern for the newer
versions too.
I have a vague memory of running into this before, that it's a known
issue.
This fixes it by adding an explicit `url_for_version` routine.
2017-10-30 22:49:52 -06:00
George Hartzell
ff031de800
Add old version to bcftools ( #5907 )
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* bcftools v1.2 and htslib v1.2
* dependency change - only require dependencies for v1.2
2017-10-25 12:20:42 +02:00
Carlos Bederián
db149876a4
samtools: add version 1.6 + some fixes ( #5715 )
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* htslib: add version 1.6
* samtools: add version 1.6, remove zlib dependency
* bcftools: add version 1.6, switch to using standalone htslib
2017-10-12 10:08:31 -06:00
Michael Kuhn
84ae7872d3
Update copyright notices for 2017 ( #5295 )
2017-09-06 17:44:16 -10:00
Todd Gamblin
cac4362f64
Make LICENSE recognizable by GitHub. ( #4598 )
2017-06-24 22:22:55 -07:00
Adam J. Stewart
745e2ce52f
Fixes needed to build htop ( #3691 )
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* Fixes needed to build htop
* Build libncursesw.so, not libncurses.so
* Remove htop hack now that it is picking up newer ncurses
* Tell packages to link to new ncursesw libraries
2017-04-05 16:03:11 -05:00
George Hartzell
d6cbae81c7
Update/samtools ( #3595 )
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* Update samtools family to 1.4
* simple cleanup
* Make bzip depends_on for future versions too
2017-03-28 21:34:41 -05:00
Adam J. Stewart
02f92fc7f8
Massive conversion from Package to AutotoolsPackage ( #2845 )
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* Massive conversion from Package to AutotoolsPackage
* Forgot to convert p4est to AutotoolsPackage
* Fix typo
* Fix broken link in docs
2017-01-18 10:34:09 -08:00
George Hartzell
ef1369c365
Add package for htslib
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Htslib was pulled out of samtools and made into a standalone thing.
This commit adds a packag for it, in support of the samtools package.
2016-08-04 14:18:03 -04:00
