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Author SHA1 Message Date
Tamara Dahlgren
3848c41494 Bugfix: test_is_externally_detectable needs to use mockpackages (#44795) 2024-06-21 12:24:46 +02:00
Veselin Dobrev
da720cafd8 openssl: add latest OpenSSL versions, deprecate previous ones (#44620) 2024-06-21 08:32:23 +02:00
AcriusWinter
8f0b029308 openpmd-api: Changed from old to new test API (#44764) 
* changed from old to new test API
* changed test name so it works
* small docstring change
* fixed skiptest check
* made tests check output
 2024-06-20 15:06:48 -07:00
Pierre Blanchard
901f4b789d sleef: add v3.6.1 (#44784) 
Update preferred package to SLEEF 3.6.1
 2024-06-20 14:47:54 -07:00
kwryankrattiger
6e6fef1b0e ParaView: add 5.13.0-RC1 (#44785) 
* ParaView: add 5.13.0-RC1
 2024-06-20 14:44:26 -07:00
George Young
ae131a5c7c py-multiqc: updating to @1.21, adding new dependency py-pyyaml-env (#44768) 
* py-multiqc: updating to @1.21, adding new dependency py-pyyaml-env
* Correcting dependencies
* Drop matplotlib depends_on() for versions of multiqc not included in package.py

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
 2024-06-20 14:28:54 -07:00
MichaelLaufer
ed59e43e1d py-pyfr: Add v2.0.2 (#44487) 
* py-gimmik: add v3.2.1
* py-pyfr: add v2.0.2
 2024-06-20 14:22:29 -07:00
Loris Ercole
5e8f9ed1c7 elpa: new version and recipe tuning (#44749) 
Add version 2024.03.001 and fix #43902.

---------

Co-authored-by: Rocco Meli <r.meli@bluemail.ch>
 2024-06-20 14:16:10 -07:00
Brian Van Essen
9c31ff74c4 Allow zlib to find external installations. (#44694) 
* Allow zlib to find external installations.
* Apply suggestions from code review
* Fixed the determine_version function to loop over all of the potential
libraries that could be installed by zlib.

---------

Co-authored-by: John W. Parent <45471568+johnwparent@users.noreply.github.com>
 2024-06-20 13:40:23 -07:00
AcriusWinter
90c8fe0182 snakemake: Changed test method name and added docstring (#44723) 
* snakemake: Changed tested method name and added docstring
 2024-06-20 10:28:29 -07:00
John W. Parent
58db81c323 bootstrap: test building clingo from sources on windows (#44624) 2024-06-20 16:39:58 +00:00
snehring
e867008819 votca: tighten up boost dep (#44777) 
* votca: tighten up boost dep

Signed-off-by: Shane Nehring <snehring@iastate.edu>
 2024-06-20 10:13:08 -06:00
Paul R. C. Kent
9910e06b25 Update package.py (#44772) 2024-06-20 17:41:15 +02:00
Harmen Stoppels
a3ece7ff4d cmake: remove version deprecated in 0.22 (#44628) 2024-06-20 17:15:26 +02:00
Robert Manson-Sawko
00f0ca2060 openmpi: add with-lsf-libdir config option (#44563) 2024-06-20 08:25:25 -06:00
Derek Ryan Strong
35557ac21c pmix: add v5.0.2, v4.2.9, v4.2.8, v4.2.7 (#44576) 2024-06-20 14:49:00 +02:00
Josh Bowden
54662f7ae1 damaris: add v1.11.0 (#44610) 
Co-authored-by: Joshua Bowden <joshua-chales.bowden@inria.fr>
 2024-06-20 14:30:11 +02:00
Wouter Deconinck
9cdb2a8dbb dd4hep: depends_on root +root7 in some cases (#43671) 
* dd4hep: depends_on root +root7 in some cases

* dd4hep: avoid self-referential whens -> conflicts

* dd4hep: avoid conflict with (narrower) depends_on root@6.27:
 2024-06-20 14:22:47 +02:00
Marcel Breyer
ffdab20294 googletest: fix checking a variant condition (#44781) 
Change "pthread" to "+pthread" since otherwise the spec is never satisfied and pthread is never used.
 2024-06-20 05:59:53 -06:00
Dominic Hofer
e91a69a756 py-tabulate: add v0.8.10, v0.9.0 (#44604) 2024-06-20 13:51:50 +02:00
Matthew Lesko
7665076339 ESMF: set ESMF_LAPACK_LIBPATH if +external-lapack (#44672) 
This PR set the `ESMF_LAPACK_LIBPATH` variable (from the `lapack` spec
attributes), removing the previous FIXME and commented example.
 2024-06-20 13:48:38 +02:00
Thomas Madlener
49ba2d84a0 edm4hep: Make edm4hep extend python after upstream changes (#44681) 2024-06-20 13:47:14 +02:00
Robert Cohn
0cec923e0a intel-oneapi-mpi: update mpi wrappers to icx variants (#44688) 2024-06-20 13:46:32 +02:00
Nick Hagerty
b97b001dad hipfort: add non-system gcc support (#44612) 2024-06-20 13:45:18 +02:00
Stephen Sachs
113e231abe Remove deprecated intel-* packages (#44700) 
Packages will be removed with https://github.com/spack/spack/pull/44689. This PR
makes sure that the `aws-pcluster-x86_64_v4` stack still works as expected.
 2024-06-20 07:07:27 -04:00
Adam J. Stewart
f43ca7a554 py-lightning: add v2.3 (#44731) 
Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
 2024-06-20 11:32:53 +02:00
Robert Cohn
3c2c215619 [intel-*] remove deprecated packages (#44689) 
* [intel-*] remove deprecated packages

* undo delete of mkl, mpi, parallel-studio
 2024-06-20 11:31:38 +02:00
Frédéric Simonis
a2b3a004bf precice: add version 3.1.2 (#44583) 2024-06-20 11:17:11 +02:00
Harmen Stoppels
f650133f83 build_environment: fix ccache error handling (#44740) 2024-06-20 11:16:24 +02:00
Thomas Helfer
81f9d5baa5 tfel: add support for versions up to 4.2.1 (#44578) 2024-06-20 11:09:50 +02:00
psakievich
3938a85ff8 nalu-wind: update submodules (#44687) 
Co-authored-by: psakievich <psakievich@users.noreply.github.com>
 2024-06-20 10:41:44 +02:00
Thomas Madlener
84cb604b19 podio: Add version 1.0 (#44780) 
Co-authored-by: Juan Miguel Carceller <22276694+jmcarcell@users.noreply.github.com>
 2024-06-20 02:31:55 -06:00
Alec Scott
093504d9a0 go: drop deprecated versions prior to v0.22 release, clean up build location (#44778) 2024-06-20 10:06:54 +02:00
Alex Richert
70a93a746d py-wxflow: new package (#44754) 
* Add py-wxflow, a set of tools used in weather workflows
* Update package.py
* add 0.2.0
* add unit testing
 2024-06-19 16:19:31 -06:00
Adam J. Stewart
4326efddbf py-maturin: add v1.6.0 (#44734) 
* py-maturin: add v1.6.0
* bzip2 only on macOS
 2024-06-19 15:02:59 -07:00
Joe Schoonover
6f51b543f0 Update hohqmesh and feq-parse packages (#44737) 
* Update hohqmesh and feq-parse versions
   Update feq-parse homepage to new documentation page
   Update feq-parse license to be consistent with 2.2.2 release

---------

Co-authored-by: fluidnumerics-joe <fluidnumerics-joe@users.noreply.github.com>
 2024-06-19 14:54:58 -07:00
Christian Glusa
3316e49ad3 Binder: Add newer version (#44741) 2024-06-19 11:14:43 -07:00
Stephen Nicholas Swatman
0c4a91cd18 actsvg: add versions up to 0.4.44 (#44770) 
This commit adds new versions of actsvg. I have also taken the liberty
of adding myself a maintainer as I work actively on the ACTS project and
its dependencies, and would like to start keeping the Spack specs more
up to date.
 2024-06-19 11:13:17 -07:00
Dave Keeshan
07c6c3ebac verilator: add v5.026 (#44757) 2024-06-19 11:07:56 -07:00
SXS Bot
e3a4a07616 spectre: add v2024.06.18 (#44761) 
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
 2024-06-19 11:06:12 -07:00
Stephen Nicholas Swatman
57467139e5 covfie: new package (#44771) 
This commit adds the covfie package which facilitates the
high-performance storage of vector fields and other structured
multi-dimensional data.
 2024-06-19 10:34:32 -07:00
Carlos Bederián
e8bc53f37b ucx: add v1.17.0 (#44767) 2024-06-19 13:24:54 +02:00
Dan Bonachea
3b78515fd4 upcxx package: Add resilience to broken libfabric (#44618) 
Some systems have a libfabric install that doesn't work, so don't
drop dead if a call to `fi_info` fails (e.g. due to missing shared libraries)
 2024-06-18 18:10:04 -07:00
downloadico
6b052c3af9 Abinit fix hdf5 (#44763) 
* abinit: fix locating HDF5
Remove the check in the configure script to locate HDF5.  Replaced by using
Spack to locate the package.
 2024-06-18 16:28:11 -06:00
AcriusWinter
37e2d46d7d Legion: Reformatted Old To New Test Method and skipping tests (#44733) 
* Legion: reformatted old test method to match new test method
* Updated docstring and how cmake file is opened
 2024-06-18 12:18:56 -07:00
eugeneswalker
a389eb5a08 e4s external rocm ci: bump rocm stack to v6.1.1 (#44449) 
* e4s external rocm ci: bump rocm stack to v6.1.1

* comment out exago+rocm due to issue with raja@0.14.0 see spack issue #44593

* comment out adios2+rocm due to spack issue #44594

* comment out petsc+rocm due to spack issue #44600

* comment out sundials+rocm due to spack issue #44601

* comment out slepc+rocm due to petsc spack issue #44600

* comment out tau+rocm due to spack issue #44659

* comment out ecp-data-vis-sdk due to spack issue #44745

* packages: register rocm-core as external

* re-enable tau due to issue #44659 having been resolved

* use latest ci image: ecpe4s/ubuntu22.04-runner-amd64-gcc-11.4-rocm6.1.1:2024.06.17

* comment out paraview due to spack issue #44745

* comment out ecp-data-vis-sdk +vtkm due to issue https://gitlab.spack.io/spack/spack/-/jobs/11632511
 2024-06-18 11:43:03 -07:00
Neil Flood
d57f174ca3 py-rios: add 1.4.17, v2.0.1 (#44679) 
* Update for 2.0.1
* cloudpickle dependency is only 'run'
* Follow new formatting guidelines
* black wants trailing commas
* Simplified version ranges, as recommended by @tldahlgren
 2024-06-18 10:35:43 -06:00
AcriusWinter
e6ae42b1eb vtk-m: Changed test method names and skipping non-applicable tests from old to new approach (#44705) 
* vtk-m: Changed test method names and skipping non-applicable tests from old to new approach

-----
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
 2024-06-18 09:40:17 -06:00
George Young
d911b9c48d seacr: new package @1.4-b2 (#42677) 
* seacr: new package @1.4-b2

* Update var/spack/repos/builtin/packages/seacr/package.py

Co-authored-by: Alec Scott <hi@alecbcs.com>

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Co-authored-by: Alec Scott <hi@alecbcs.com>
 2024-06-18 07:37:58 -07:00
Tim Haines
3b35b7f4fa Boost: switch from jfrog to boost.io for downloads (#44728) 
The jfrog hosting will be shut down in Dec 2024.
 2024-06-18 08:40:03 +02:00