Adam J. Stewart
8e4d60645f
Add py-geeup package ( #12367 )
2019-08-10 11:52:10 -05:00
Adam J. Stewart
706d57bd23
Add py-google-api-core package ( #12368 )
2019-08-10 11:51:56 -05:00
Adam J. Stewart
09e0f1ad4e
Add py-google-cloud-core package ( #12369 )
2019-08-10 11:51:41 -05:00
Adam J. Stewart
3c54e55546
Add py-google-cloud-storage package ( #12370 )
2019-08-10 11:51:27 -05:00
Adam J. Stewart
a3cc7eb4f7
Add py-google-resumable-media package ( #12371 )
2019-08-10 11:51:12 -05:00
Adam J. Stewart
b329d5f27f
Add py-googleapis-common-protos package ( #12372 )
2019-08-10 11:50:58 -05:00
Adam J. Stewart
fbf386328c
Add py-oauth2client package ( #12373 )
2019-08-10 11:50:43 -05:00
Adam J. Stewart
1d0f61816a
Add py-pathlib package ( #12374 )
2019-08-10 11:50:24 -05:00
Adam J. Stewart
37e59cbd7e
Add py-pyperclip package ( #12375 )
2019-08-10 11:50:10 -05:00
Adam J. Stewart
572bc5cc77
Add py-pysmartdl package ( #12376 )
2019-08-10 11:49:55 -05:00
Adam J. Stewart
3601f1c825
Add py-retrying package ( #12377 )
2019-08-10 11:49:41 -05:00
Adam J. Stewart
25b3946e0b
Add py-selenium package ( #12378 )
2019-08-10 11:49:25 -05:00
Sajid Ali
48016366c8
modified: var/spack/repos/builtin/packages/libflame/package.py ( #12379 )
2019-08-10 11:48:58 -05:00
Cameron Smith
a4a30de8a1
libconfig: add version 1.7.1 ( #12324 )
...
* libconfig: add version 1.7.1
* move 1.7.1 above 1.6, latest version is preferred
2019-08-10 11:08:53 -05:00
Seth R. Johnson
54018b488a
Fix build for moab 4.9.2 on gcc8 ( #12328 )
...
```
5 errors found in build log:
609 CXX mbpart.o
610 CXX quality.o
611 CXX umr.o
612 CXX merge.o
613 CXX parread.o
614 mbpart.cpp: In function 'int main(int, char**)':
>> 615 mbpart.cpp:494:19: error: no match for 'operator<<' (operand types
are 'std::ostream' {aka 'std::basic_ostream<char>'} and 'std::ostri
ngstream' {aka 'std::__cxx11::basic_ostringstream<char>'})
616 std::cerr << tmp_output_file << " : failed to write file."
<< std::endl;
617 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
618 mbpart.cpp:494:19: note: candidate: 'operator<<(int, int)' <built-i
n>
619 mbpart.cpp:494:19: note: no known conversion for argument 2 from
'std::ostringstream' {aka 'std::__cxx11::basic_ostringstream<char>'
} to 'int'
620 In file included from /software/user_tools/centos-7.2.1511/cades-ns
ed-spack/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbum
ioobdbkw4rwfyn2givi4nyvwq/include/c++/8.2.0/iterator:64,
621 from /software/user_tools/centos-7.2.1511/cades-ns
ed-spack/var/spack/stage/moab-4.9.2-77uuzmj4ofb7z7vz6m25sftyks7p5do
7/spack-src/src/moab/Range.hpp:167,
...
886 /software/user_tools/centos-7.2.1511/cades-nsed-spack/opt/spack/lin
ux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbumioobdbkw4rwfyn2givi4ny
vwq/include/c++/8.2.0/ostream:682:5: note: candidate: 'template<cla
ss _Ostream, class _Tp> typename std::enable_if<std::__and_<std::__
not_<std::is_lvalue_reference<_Tp> >, std::__is_convertible_to_basi
c_ostream<_Ostream>, std::__is_insertable<typename std::__is_conver
tible_to_basic_ostream<_Tp>::__ostream_type, const _Tp&, void> >::v
alue, typename std::__is_convertible_to_basic_ostream<_Tp>::__ostre
am_type>::type std::operator<<(_Ostream&&, const _Tp&)'
887 operator<<(_Ostream&& __os, const _Tp& __x)
888 ^~~~~~~~
889 /software/user_tools/centos-7.2.1511/cades-nsed-spack/opt/spack/lin
ux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbumioobdbkw4rwfyn2givi4ny
vwq/include/c++/8.2.0/ostream:682:5: note: template argument dedu
ction/substitution failed:
890 /software/user_tools/centos-7.2.1511/cades-nsed-spack/opt/spack/lin
ux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbumioobdbkw4rwfyn2givi4ny
vwq/include/c++/8.2.0/ostream: In substitution of 'template<class _
Ostream, class _Tp> typename std::enable_if<std::__and_<std::__not_
<std::is_lvalue_reference<_Tp> >, std::__is_convertible_to_basic_os
tream<_Ostream>, std::__is_insertable<typename std::__is_convertibl
e_to_basic_ostream<_Tp>::__ostream_type, const _Tp&, void> >::value
, typename std::__is_convertible_to_basic_ostream<_Tp>::__ostream_t
ype>::type std::operator<<(_Ostream&&, const _Tp&) [with _Ostream =
std::basic_ostream<char>&; _Tp = std::__cxx11::basic_ostringstream
<char>]':
891 mbpart.cpp:494:22: required from here
>> 892 /software/user_tools/centos-7.2.1511/cades-nsed-spack/opt/spack/lin
ux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbumioobdbkw4rwfyn2givi4ny
vwq/include/c++/8.2.0/ostream:682:5: error: no type named 'type' in
'struct std::enable_if<false, std::basic_ostream<char>&>'
893 CXXLD mbdepth
894 CXXLD hexmodops
>> 895 make[2]: *** [mbpart.o] Error 1
896 make[2]: *** Waiting for unfinished jobs....
897 make[2]: Leaving directory `/localscratch/tmp/s3j-spack/spack-stage
/spack-stage-NT13kT/spack-src/tools'
>> 898 make[1]: *** [all-recursive] Error 1
899 make[1]: Leaving directory `/localscratch/tmp/s3j-spack/spack-stage
/spack-stage-NT13kT/spack-src/tools'
>> 900 make: *** [all-recursive] Error 1
```
2019-08-10 11:08:13 -05:00
Adam J. Stewart
f9e6f0fb62
py-numexpr: switch from PyPI to GitHub download ( #12360 )
2019-08-09 22:27:34 -05:00
Ricardo Silva
c5849ce04f
gromacs: fix CPU optimizations detection (simd=auto) ( #12354 )
...
* SL-637
* https://redmine.gromacs.org/issues/2927
* tested with cmake 3.14.4 and 3.15.1
2019-08-09 21:38:16 -05:00
Russell J. Hewett
7cc57d74e4
Updated Blaze version 3.5 and added access to master branch ( #12341 )
...
* blaze: added version 3.5
* blaze: added access to bleeding edge
2019-08-09 21:32:54 -05:00
Cameron Stanavige
13112d6b1c
flatcc: add version 0.5.3 ( #12358 )
...
This updates the flatcc package to have the latest version.
2019-08-09 21:32:10 -05:00
Geoffrey Oxberry
28ffc1a4b9
gnome-common: new package ( #12359 )
2019-08-09 21:31:47 -05:00
Geoffrey Oxberry
92c65f3150
Add new package: libfive@master ( #12334 )
2019-08-09 18:10:00 -05:00
Toyohisa Kameyama
b54576abaf
sdl2: fix dependency for libxext and build on ARM ( #12351 )
...
1. add dependency for libxext2.
2. SSEMATH is off is aarch64.
3. reformat comment for flake8.
2019-08-09 10:24:16 -05:00
Sean McGrath
74fe729be2
New Plink beta version ( #12352 )
...
* Plink 1.9 Beta 6.10 added
* Typo Fix
2019-08-09 10:22:18 -05:00
Sinan
a999092a93
newpackage/tippecanoe ( #12319 )
...
* newpackage/tippecanoe
* make flake8 happy
* add "r" for raw text
2019-08-09 10:18:26 -05:00
Geoffrey Oxberry
7b47178a53
bugfix: hunspell: add missing gettext dependency ( #12347 )
...
* hunspell: write autoreconf method to triage error
This commit fixes the error described in GitHub issue
`AutotoolsPackage` class attempts to call `libtoolize`, which doesn't
exist on macOS systems that externally install `libtool` in Spack via
Homebrew -- Homebrew installzes GNU libtoolize as `glibtoolize`.
The fix is to call `autoreconf` only, and GitHub pull request #12344
makes this change in
AutotoolsPackage (https://github.com/spack/spack/pull/12344 ). However,
while waiting for that pull request to be merged, overriding the
`autoreconf` method achieves the same result for a self-contained
fix. This self-contained fix is necessary to fix a dependency bug in
the `hunspell` package.
* hunspell: add missing gettext dependency
* hunspell: add version 1.7.0
2019-08-09 10:17:57 -05:00
Derick Huth
850b2ad42e
Fixed broken iegenlib package ( #12229 )
...
* Fixed broken iegenlib package
* [IEGenLib] fixed for style
* [IEGenLib] style fixes
* [IEGenLib] removed CMAKE_BUILD_TYPE option from config_args
2019-08-09 10:14:17 -05:00
angel-devicente
e203068125
Added checksum for binutils@2.32 ( #12350 )
2019-08-08 23:56:41 -05:00
Greg Becker
be6ac6ce6d
bugfix: nested matrices in spec lists ( #12320 )
...
* stack concretization: fix handling of variant names with dashes
* spec_list: bugfix for handling nested matrices
2019-08-08 20:53:31 -07:00
Geoffrey Oxberry
9336a8be38
enchant@2.2.5: new package ( #12349 )
2019-08-08 22:50:06 -05:00
Toyohisa Kameyama
14bdd56004
hisea: build on ARM. ( #12302 )
2019-08-08 22:45:23 -05:00
Marc-Andre Hermanns
606246572a
Add new releases of Cube Tools, Opari2, OTF2, and Score-P ( #12303 )
2019-08-08 22:44:33 -05:00
Owen Solberg
178476d8c8
new package: Cromwell ( #12309 )
...
* add new package cromwell
* fix flake8 errors, add cromwell-womtool package
* change name of cromwell to cromwell-server
* renamed cromwell-server to just cromwell
* update description to what is in the project docs
* fixing format call for python2.6 compatibility
2019-08-08 22:39:00 -05:00
Sinan
d1e8ea302f
new package: aria2 ( #12318 )
...
* new package: aria2
* tidy up
2019-08-08 22:36:13 -05:00
Cameron Smith
51adb6a4ef
netcdf-cxx4: add m4 dep for call to autoreconf ( #12325 )
2019-08-08 22:29:42 -05:00
Geoffrey Oxberry
1a432fb213
guile: add versions 2.2.1 through 2.2.6 ( #12333 )
2019-08-08 22:22:17 -05:00
Adam J. Stewart
89af88aa02
Re-add py-cython dependency to py-tables ( #12338 )
2019-08-08 21:57:16 -05:00
Adam J. Stewart
b409283ad5
Add py-certifi 2019.6.16 ( #12339 )
2019-08-08 21:57:01 -05:00
Adam J. Stewart
44f4ad7bbf
Allow Spack to uninstall external extensions without permissions ( #11991 )
...
* Allow Spack to uninstall external extensions without permissions
Raise when self.projections is not empty
2019-08-08 17:46:14 -07:00
Adam J. Stewart
0b4e13c034
openssl package: add versions including 1.1.1c ( #12342 )
...
* Add comment that 1.0.1 versions are no longer supported
* Add comment that 1.0.2 versions are only supported up to
December 2019
* Add versions 1.0.2s, 1.0.2r, and 1.0.2p
* Add versions 1.1.0k, 1.1.0j, and 1.1.0i
* Add version 1.1.1c
* Add comment that 1.1.0 versions are only supported up to
September 2019
2019-08-08 17:04:53 -07:00
Pariksheet Nanda
72bb7646fe
docs: fix compiler config ( #12330 )
...
It's no longer possible to set compiler flags under as an entry under
"paths" in compilers.yaml; instead the user must list these under the
"flags" section. This updates the docs accordingly.
2019-08-08 16:47:24 -07:00
Adam J. Stewart
b4862be875
Fix typo in yaml config docs ( #12312 )
2019-08-08 10:56:11 +02:00
Greg Becker
36fbd6cf4c
bugfix: spack stacks mixed dependency and non-dep constraints ( #12315 )
...
Spack stacks drop invalid dependencies applied to packages by a
spec_list matrix operation
Without this fix, Spack would raise an error if orthogonal dependency
constraints and non-dependency constraints were applied to the same
package by a matrix and the dependency constraint was invalid for
that package. This is an error, fixed by this PR.
An example failing configuration:
spack:
definitions:
- packages: [libelf, hdf5+mpi]
- compilers: ['%gcc']
- mpis: [^openmpi]
specs:
- matrix:
- $packages
- $compilers
- $mpis
2019-08-07 18:34:41 -07:00
Peter Scheibel
a791234676
Revert "add maintainer review action to main.workflow" ( #12316 )
...
This reverts commit 54e3bc31f9
2019-08-07 17:23:47 -07:00
Peter Scheibel
92ec732f9a
compiler bootstrapping: enable both single-node and multi-node DAGS( #12310 )
...
5f74f22
2019-08-07 14:43:25 -07:00
Jon Rood
941eb5d756
Generalize STK package settings in Trilinos ( #11917 )
...
* Making STK package in Trilinos more general.
* Remove comment about seacas exodus settings.
2019-08-07 16:11:15 -05:00
Pariksheet Nanda
0c9bc8da86
ncbi-toolkit: add version 22_0_0 ( #12278 )
...
* ncbi-toolkit: fix compiler+version restriction (spack/spack#12276 )
* ncbi-toolkit: update urls for current and archive releases
* ncbi-toolkit: add compatibility for boost@1.69:
* ncbi-toolkit: add compatibility for boost@1.70:
* ENH: Add debug variant to significantly reduce install size
* ncbi-toolkit: add archive url for 22_0_0 (spack/spack#12278 )
2019-08-07 14:18:36 -05:00
Piotr Luszczek
f7026a058b
Version 19.8.1 of PLASMA ( #12299 )
...
* Remove unnecessary setting with buggy prefix
Spack adds installation prefix by default and the "self." is missing
* Add version 19.8.1 of PLASMA
2019-08-07 00:08:59 -05:00
Daryl W. Grunau
4f6916261c
new package: py-exodus ( #12291 )
2019-08-06 23:11:56 -05:00
Mark W. Krentel
2f84db881b
ncurses: fix pic and opt flags ( #12272 )
...
Resolves #11932 .
Move the PIC flags from CFLAGS on the configure line to the spack
compiler wrapper for ncurses. The problem with the configure line for
autotools is that specifying CFLAGS sets the entire flags, thus
deleting the flags that configure would add itself.
By default, if CFLAGS is unspecified, then configure picks a sensible
default of `-g -O2`. But adding `-fPIC` erases these and it ends up
building unoptimized.
2019-08-06 22:21:25 -05:00
Cameron Smith
e077532baf
pumi: new version 2.2.1 ( #12282 )
2019-08-06 22:09:46 -05:00
