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4,122 Commits 246 Branches 186 Tags
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2113 Commits

Author SHA1 Message Date
Glenn Johnson
dbf799bbf9 New package - r-gdata 
Data manipulation tools.
 2016-07-31 15:07:40 -05:00
Glenn Johnson
f39e570f36 New package - r-roxygen2 
In-source documentation for R.
 2016-07-31 14:52:16 -05:00
Glenn Johnson
58a6039c0a New package - r-testthat 
A unit testing system for R.
 2016-07-31 14:40:46 -05:00
Glenn Johnson
0662b953f0 New package - r-xml 
Tools for parsing and generating XML within R and S-Plus.
 2016-07-31 14:25:17 -05:00
Glenn Johnson
1b04b8be01 New package - r-datatable 
Extension of Data.frame
 2016-07-31 14:11:04 -05:00
Todd Gamblin
173a16b38a Merge pull request #1396 from glennpj/r-quantmod 
New package - r-quantmod
 2016-07-30 20:15:53 -07:00
Todd Gamblin
68ba5377c1 Merge pull request #1395 from glennpj/r-ggmap 
New package - r-ggmap and dependencies
 2016-07-30 20:14:57 -07:00
Todd Gamblin
253507c0c3 Merge pull request #1394 from glennpj/r-maps 
New package - r-maps
 2016-07-30 20:14:27 -07:00
Todd Gamblin
7684652ce3 Merge pull request #1393 from glennpj/r-maptools 
New package - r-maptools
 2016-07-30 20:14:19 -07:00
Todd Gamblin
b12dc34ba7 Merge pull request #1391 from glennpj/r-caret 
New package - r-caret
 2016-07-30 20:14:09 -07:00
Todd Gamblin
9c31ee8a75 Merge pull request #1390 from glennpj/r-glmnet 
New package - r-glmnet
 2016-07-30 20:13:50 -07:00
Todd Gamblin
ae5ba2b110 Merge pull request #1389 from glennpj/r-vcd 
New package - r-vcd
 2016-07-30 20:13:05 -07:00
Todd Gamblin
13499f1655 Merge pull request #1388 from glennpj/r-multcomp 
New package - r-multcomp
 2016-07-30 20:12:51 -07:00
Todd Gamblin
49e9f365d8 Merge pull request #1387 from glennpj/r-randomforest 
New package r-randomforest
 2016-07-30 20:12:21 -07:00
Glenn Johnson
41cd861861 New package - r-quantmod 
Qualitative Financial modelling framework.
 2016-07-30 18:25:43 -05:00
Glenn Johnson
2913aa8d09 New package - r-ggmap and dependencies 
Spatial visualization with ggplot2
 2016-07-30 18:14:02 -05:00
Glenn Johnson
1bd2def41e New package - r-maps 
Draw geographical maps.
 2016-07-30 17:34:07 -05:00
Glenn Johnson
386f0e577a New package - r-maptools 
Tools for reading and handling spatial objects.
 2016-07-30 17:26:31 -05:00
Glenn Johnson
7207ce2a18 New package - r-caret 
Classification and Regression Training
 2016-07-30 16:53:54 -05:00
Glenn Johnson
20e52e5052 New package - r-glmnet 
Lasso and Elastic-Net Regularized Generalized Linear Models
 2016-07-30 16:38:00 -05:00
Glenn Johnson
e9944150a5 New package - r-vcd 
Visualizing Categorical Data
 2016-07-30 16:28:43 -05:00
Glenn Johnson
fc1804974c New package - r-multcomp 
Simultaneous Inference in General Parametric Models.
 2016-07-30 16:09:57 -05:00
Glenn Johnson
12167e8f37 New package r-randomforest 
Breiman and Cutler's Random Forests for Classification and Regression.
 2016-07-30 15:39:28 -05:00
Glenn Johnson
8dc26bbcd9 Have R extensions build in parallel. 
Set `MAKEFLAGS` so R extensions can be built in parallel if that is set
in spack.
 2016-07-30 15:20:14 -05:00
Glenn Johnson
ee7acc6b13 New package r-car 
Companion to Applied Regression.
 2016-07-30 15:10:25 -05:00
Denis Davydov
aad5a4c4b3 mkl: flake8 fixes; minor docu update 2016-07-29 14:12:07 +02:00
Denis Davydov
b6ce0e6f0e trilinos: make sure hdf5 is picked up from Spack 2016-07-29 13:11:12 +02:00
Denis Davydov
943896e237 trilinos: fix lapack lib dir 2016-07-29 13:09:34 +02:00
Denis Davydov
8ee4df8101 hypre: minor cleanup related to blas/lapack 2016-07-29 11:37:19 +02:00
Denis Davydov
572f1cd427 mkl: symlink libs to prefix.lib 2016-07-29 11:36:37 +02:00
Todd Gamblin
e04662f84f Merge pull request #1344 from LLNL/bugfix/py-nose-nosetests 
do not ignore nosetests script in py-nose
 2016-07-28 10:19:13 -07:00
becker33
5caaa2cd75 Merge pull request #1331 from adamjstewart/fixes/mvapich2 
MVAPICH2 depends on libpciaccess
 2016-07-28 09:52:51 -07:00
becker33
3759f62cba Merge pull request #1235 from davydden/pkg/p4est_run_tests 
p4est: use run_tests instead of a variant
 2016-07-27 18:36:36 -07:00
George Hartzell
f855cf6bab Add package for tree 
Add a package for [tree](http://mama.indstate.edu/users/ice/tree/).

It has a Makefile that hardcodes a prefix and some CFLAGS.  Used
filter_file to:

- set the make variable *prefix* to `prefix`; and
- comment out their CFLAGS, just use ours....

It installs, runs on CentOS7, and uninstalls cleanly.
 2016-07-27 11:32:03 -04:00
Todd Gamblin
458deaae5e Merge pull request #1350 from adamjstewart/fixes/openssl 
Fix OpenSSL url_for_version
 2016-07-27 08:08:00 -07:00
Samuel Knight
a2d4dcc636 Added libhio package 2016-07-25 17:32:03 +00:00
becker33
969e785d94 Merge pull request #1352 from glennpj/r_googlevis 
New package - r-googlevis
 2016-07-25 10:25:47 -07:00
becker33
5b7ec8de95 Merge pull request #1351 from glennpj/r_htmlwidgets 
New packages - R htmlwidgets
 2016-07-25 10:25:19 -07:00
Glenn Johnson
eb865b0df2 Add py-setuptools as dependency 
With the addition of dependency types and with `py-setuptools` set as
type='build' there are more packages that need to have `py-setuptools`
added as a dependency.

This PR adds that dependency for the following packages:
- py-h5py
- py-networkx
- py-pytables
- py-scikit-image
 2016-07-25 11:23:09 -05:00
Glenn Johnson
81cd458c26 r-curl update and chaged remote archive 
This updates to the 1.0 version of r-curl. The remote archive directory
name also changed so change that here as well.
 2016-07-24 16:48:07 -05:00
Glenn Johnson
27986c9edf New packages - R htmlwidgets 2016-07-24 16:43:35 -05:00
Glenn Johnson
b7bf88c761 New package - r-googlevis 2016-07-24 16:38:36 -05:00
Adam J. Stewart
29278090eb Fix OpenSSL url_for_version 2016-07-24 15:19:27 -05:00
Glenn Johnson
a8855f48aa Add dependency type tp r- packages 
This PR adds the `nolink` dependency type to r- package dependencies.
This is needed due to the new dependency types in Spack. A couple of
packages were updated with new versions as well.
 2016-07-23 19:43:55 -05:00
Greg Lee
773bca159a do not ignore nosetests script in py-nose 2016-07-22 15:49:36 -07:00
Glenn Johnson
ec9959b152 R extension dependencies with compiler wrapper 
This commit introduces a mechanism to insure that R package dependencies
are built with the Spack compiler wrapper. A copy of Makeconf is made
before `filter_compilers` is called. This is then pointed to by the
R_MAKEVARS_SITE environment variable set up in
`setup_dependent_environment`. With this the normal compilers are used
outside of spack and the spack wrapper compilers are used inside of
spack.

This commit also standardizes on the `join_path` call. It also sets the
commented build command to reflect what is actually used with the newer
string formatting.
 2016-07-22 17:05:01 -05:00
Todd Gamblin
395c616a48 Merge pull request #950 from xjrc/packages/python 
Enhancement Proposal: Make Python Spack Installs Ignore User Configuration
 2016-07-22 13:56:19 -07:00
Joseph Ciurej
fa92f58167 Adding temporary script that fixes all Python extensions w/ 'setup_py'. 2016-07-22 11:17:19 -07:00
Joseph Ciurej
ac2e0962ce Improved the build flag construction code in the python install method. 2016-07-22 11:12:02 -07:00
Joseph Ciurej
fb2d2303d6 Fixed a bug that was causing Python installs to be affected by user config. 2016-07-22 11:11:08 -07:00