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Author SHA1 Message Date
Jeff Squyres
67b94acd42 mpich: add fine-grained MPI conformance versions 
Similar to the Open MPI and MVAPICH packages.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2015-10-17 07:06:06 -04:00
Todd Gamblin
fe76e0aea2 Merge pull request #130 from jsquyres/pr/trivial-README-update 
README.md: trivial typo fix
 2015-10-16 14:05:14 -07:00
Jeff Squyres
43f58d9f61 openmpi: update the MPI conformance for each Open MPI version 2015-10-16 15:27:22 -04:00
Jeff Squyres
f39e40664f openmpi: add v1.10.0 and update v1.8.2->v1.8.8 2015-10-16 15:26:58 -04:00
Jeff Squyres
13e02bb179 README.md: trivial typo fix 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2015-10-16 06:36:32 -04:00
Peter Scheibel
39f0f000f8 Created unit test for core logic in test-install command. 2015-10-15 22:02:14 -07:00
Peter Scheibel
6cd976d036 Better description for test-install command 2015-10-15 20:13:08 -07:00
Peter Scheibel
49b91235bb Minor edit for clarity (generate output for single top level spec vs. iterating 
through collection of size 1)
 2015-10-15 19:59:57 -07:00
Peter Scheibel
82ed1bc343 Originally I enforced specifying 1 top-level package with the test-install 
command by having it consume exactly 1 positional argument (i.e. by removing
"nargs=argparse.REMAINDER") but this does not work when configuring dependencies
of a top-level package (which show up as additional positional args). Instead
now there is an explicit check to ensure there is only 1 top-level package.
 2015-10-15 19:38:47 -07:00
Peter Scheibel
e451421db3 1. Specifying the output file path for test-install is now an option (vs. an 
argument). The default path is [package id].xml in the CWD where test-install
is called from.

2. Fixed a bug with package.build_log_path (which was added in this branch).

3. keep_stage for package.do_install is now set. This allows uninstalling and
reinstalling packages without (re) downloading them.
 2015-10-15 19:22:36 -07:00
Peter Scheibel
4997f0fe57 Move logic for tracking the build log into package.py (since that is what is 
managing the build log) and expose as package.build_log_path.
 2015-10-15 12:44:02 -07:00
Peter Scheibel
c985ad7644 Update test failure output: don't include the entire build log, just lines which 
mention errors (or if no such lines can be found, output the last 10 lines from
the log).
 2015-10-15 12:23:56 -07:00
Peter Scheibel
b9bf0b942c Use spec.traverse vs. recursive function. 
Also even though I calculated which installs are new (e.g. vs. packages that
have already been installed by a previous command) I forgot to make use of that
in create_test_output (so I was always generating test output even if a package
had been installed before running the test-install command).

Note to avoid confusion: the 'handled' variable (removed in this commit) did not
serve the same purpose as 'newInstalls': it was originally required because the
recursive approach would visit the same dependency twice if more than one
package depended on it.
 2015-10-15 11:52:08 -07:00
Peter Scheibel
f2b4341ad6 Always run with verbose output (so eliminate it as an option). Also remove other 
commented options.
 2015-10-15 10:45:03 -07:00
Peter Scheibel
11861fb8d7 Changing name of file requires changing function name to be invoked as a command 2015-10-15 10:35:42 -07:00
Peter Scheibel
e3d703b80f Change name of file to conform to conventions. 2015-10-15 10:33:39 -07:00
Peter Scheibel
2ae7839b66 Edit function names to conform to naming conventions. 2015-10-15 10:26:13 -07:00
Peter Scheibel
0d66362cee Only install 1 top-level package with testinstall. Otherwise if multiple 
packages are specified and a prior one fails, it will prevent any of the others
from succeeding (and generating test output) even if they don't share
dependencies.
 2015-10-15 10:17:08 -07:00
Ben Boeckel
3ce85b2270 spack: split spack_root from prefix 
A foundation for allowing runtime configuring of the prefix.
 2015-10-15 09:27:05 -04:00
Ben Boeckel
9ec4ae83af netcdf: link to MPI 
Newer GNU linker refuses to use transitive linking; if netcdf calls
MPI_Allreduce, it must link the providing library directly.

Also switched to CMake because I don't know autoconf well enough to know
how to put MPI stuff into it.
 2015-10-15 09:20:16 -04:00
Peter Scheibel
71dcf8833c Make sure to generate output for dependencies as if they were separate tests: 
the original intent was to generate output as if each package was a unit test,
but I noticed that I was only generating test output for top-level packages.
 2015-10-13 19:02:41 -07:00
Peter Scheibel
1ce6d8b627 Add spec YAML format to test output. 2015-10-13 10:41:47 -07:00
Todd Gamblin
d16095c856 Add forgotten file from previous commit. 2015-10-13 10:35:19 -07:00
Peter Scheibel
9f56d9c807 Don't create test output for any package that was already installed. 2015-10-12 20:56:03 -07:00
Peter Scheibel
6cd22e5786 1. Added Junit XML format 
2. Specify output to a file vs. a directory
3. Use [1] and [2] to write an XML file tracking success of package installs in
Junit XML format
 2015-10-12 20:49:23 -07:00
Peter Scheibel
b7249d66b3 Adding command testinstall. See "spack testinstall -h" for documentation. 
Still need to add output formatting (in a commonly parse-able format like Junit
or TAP). May want to adjust how the build log is accessed in case of a build
failure.
 2015-10-12 19:18:31 -07:00
Todd Gamblin
2c81875019 Fix bug in colify color handling. 2015-10-12 14:44:41 -07:00
Gregory L. Lee
5dd39bfca5 bug fix for github issue 122 2015-10-08 08:12:30 -07:00
Todd Gamblin
58c5373890 update warning message for spack -k. 
- warning said it didn't do checksums; really does.
 2015-10-08 00:14:44 -07:00
Todd Gamblin
5d64012868 Merge branch 'features/libxcb-1.11.1' into develop 2015-10-08 00:13:47 -07:00
Massimiliano Culpo
17de9a37f1 gcc : fixed spec file 2015-10-06 18:49:18 +02:00
Massimiliano Culpo
d44571257a spec file : everything is dumped, only link rule is modified 2015-10-06 18:49:04 +02:00
Massimiliano Culpo
f068d1ba57 GCC : added variants for libelf, binutils, isl. gcc@5.0: still has issues 2015-10-06 18:48:47 +02:00
Gregory L. Lee
6fcf16b710 added libxcb version 1.11.1 2015-10-05 12:59:26 -07:00
Mario Melara
75d30b08fb Added current version 3.2 of libffi version 3.1 has a bug that interferes with glib 2015-10-01 21:51:55 -07:00
Todd Gamblin
cc6252cdfa Merge pull request #118 from scalability-llnl/features/scr 
update scr to 1.1.8
 2015-09-29 18:21:37 -07:00
Adam Moody
5563c66675 update scr to 1.1.8 2015-09-29 18:18:34 -07:00
Gregory Becker
5fda7daf57 an ordered database test 2015-09-27 17:54:24 -07:00
Todd Gamblin
dd21a01dc4 Merge pull request #116 from mamelara/develop 
Added samtools bioinformatics software
 2015-09-27 17:29:50 -07:00
Todd Gamblin
8818f4ac5e Remove enabled variants from install prefix. 
- these make the prefix too long in many cases.
- users can figure out which install is which by querying.
 2015-09-27 17:01:35 -07:00
Todd Gamblin
adbd393c39 Remove special characters (@, %, +, ~, etc) from stage name 2015-09-27 17:01:35 -07:00
Mario Melara
13eb461ec3 Adding bowtie2 package along with patch 2015-09-24 11:21:54 -07:00
Mario Melara
521632b3dc Added samtools bioinformatics software 2015-09-23 16:30:44 -07:00
Todd Gamblin
6d4eed3845 Merge pull request #102 from RasmusWL/features/fish 
Add fish (shell) package
 2015-09-23 01:37:59 -07:00
Todd Gamblin
82ea7aec51 Merge pull request #106 from justintoo/add-package-doxygen 
(Package) Add Doxygen (v1.8.10)
 2015-09-23 01:37:31 -07:00
Todd Gamblin
d474eeb424 Merge pull request #110 from scalability-llnl/features/boostupdate 
update boost package for new releases
 2015-09-23 00:32:22 -07:00
Todd Gamblin
5d6baacc56 Merge pull request #111 from scalability-llnl/features/protobuf 
add protobuf package
 2015-09-23 00:31:26 -07:00
Todd Gamblin
46cf0a23d9 Merge pull request #112 from scalability-llnl/features/glog 
add glog package
 2015-09-23 00:30:37 -07:00
Todd Gamblin
f02af701e5 Merge pull request #113 from scalability-llnl/features/gflags 
add gflags package
 2015-09-23 00:29:50 -07:00
Todd Gamblin
5f826a0ab7 Merge pull request #114 from scalability-llnl/features/snappy 
Features/snappy
 2015-09-23 00:27:27 -07:00