This PR does the following:
- adds version corresponding to commit at 08/03/2020
- adds missing get_DE_events.py script
- adds dependencies needed by get_DE_events.py
- removes REDItoolDenovo.py.patch and python2to3.patch in favor of
running 2to3 and reindent pre-build
- add batch_sort.patch to handle differences in string/char handling
betweeen python2 and python3
- adds a variant for the Nature Protocol
- adds dependencies for the nature_protocol variant
- added myself as maintainer
This PR adds a new version of reditools from git.
This PR fixes a couple of issues with the opencv package, mostly in
relation to cuda. This is only focused on cuda, not any of the other
variants.
- Added versions to the contrib_vers list. Added for all that can be
retrieved from github. The one for the latest version was missing.
- Added a cmake patch for v3.2.0.
- Deprecated versions 3.1.0 and 3.2.0 as neither of those could be
built, with or without cuda.
- Adjusted constraints on applying initial cmake patch.
- Added cudnn dependency when +cuda.
- Set constraints for cudnn and cuda for older versions of opencv.
* New package: py-pyusb
Change-Id: I606127858b961b5841c60befc5a8353df0f9f38c
* fixup dependencies
Change-Id: I0c9b0ccee693d2c4e847717950d4ce64cb319794
* fixup 2
Change-Id: Ibaccbdafd865e363564f491054e4e4ceb778727b
* Update var/spack/repos/builtin/packages/py-pyusb/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
A patch no longer applies cleanly as its fixed in v4.0.6 - fix it here
==> Installing openmpi-4.0.6-in47f6rxspbnyibkdx6x4ekg6piujobd
==> No binary for openmpi-4.0.6-in47f6rxspbnyibkdx6x4ekg6piujobd found: installing from source
==> Fetching https://download.open-mpi.org/release/open-mpi/v4.0/openmpi-4.0.6.tar.bz2
Reversed (or previously applied) patch detected! Assume -R? [n]
Apply anyway? [n]
2 out of 2 hunks ignored -- saving rejects to file opal/include/opal/sys/gcc_builtin/atomic.h.rej
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
The Z3 solver provides a Z3Config.cmake file when built using the CMake build
system. This submission changes the package build system to inherit the
CMakePackage type. In addition to changing the build system, this submission:
- Adds the GMP variant
- Removes v4.4.0 and v4.4.1 as CMake was implemented starting with v4.5.0
