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Author SHA1 Message Date
pabloaledo
f5888d8127 picard: add variant with jvm arguments (#39204) 
* picard: add variant with jvm arguments
* fix variant and update wrapper script

---------

Signed-off-by: Pablo <pablo.aledo@seqera.io>
 2023-08-09 13:24:34 -07:00
Jennifer Green
77c838ca93 libhio: package update for new sha256 checksum for v1.4.1.5 (#38696) 2023-08-09 12:10:37 -07:00
Alec Scott
11e538d962 emacs: Add v29.1 (#39147) 2023-08-09 11:32:04 -07:00
Axel Huebl
7d444038ee AMReX: 23.06+ Multi-Dim Support (#37695) 
* AMReX: 23.06+ Multi-Dim Support

This updated the Spack package to allow to install AMReX, modules of
AMReX in E4S deployments and dependent packages with support for
multiple dimensions. Due to an upstream change in AMReX, we do not
longer need to ship three, binary incompatible package variants.

* [E4S] oneAPI AMReX < 23.06 Variant

Work-around the auto-concretization to the multi-dim of `dimensions`,
which only in 23.06+ became a multi-variant.

* e4s cray rhel ci: temporarily disable amrex build until spurious ci failure can be resolved

---------

Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
 2023-08-09 11:25:43 -07:00
Hariharan Devarajan
c24471834b Release brahma 0.0.1 (#39345) 
* release brahma 0.0.1
 2023-08-09 11:18:52 -07:00
Andrey Parfenov
b1e33ae37b add info about devito and qe for intel env (#39357) 
Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>
 2023-08-09 12:47:35 -04:00
Jordan Galby
c36617f9da Fix package.py error handling bug (#39017) 2023-08-09 17:47:43 +02:00
dependabot[bot]
deadb64206 build(deps): bump black from 23.1.0 to 23.7.0 in /lib/spack/docs (#38982) 
Bumps [black](https://github.com/psf/black) from 23.1.0 to 23.7.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.1.0...23.7.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2023-08-09 17:19:49 +02:00
Massimiliano Culpo
9eaa88e467 caliper: deprecate old versions (#39352) 2023-08-09 17:11:57 +02:00
Juan Miguel Carceller
bd58801415 dd4hep: fix setting LD_LIBRARY_PATH (#38015) 
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
 2023-08-09 16:42:05 +02:00
Juan Miguel Carceller
548a9de671 py-setuptools-scm: add a git dependency (#36770) 
* Add a git dependency

* Add the dependency only for building

* Change dependency to build and run

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2023-08-09 10:38:46 -04:00
Harmen Stoppels
8e7c53a8ba package import: remove magic import line (#39183) 2023-08-09 14:28:06 +00:00
Tamara Dahlgren
5e630174a1 cpmd: convert to new stand-alone test process (#35744) 2023-08-09 15:59:51 +02:00
Cristian Di Pietrantonio
175a65dfba libzmq: do not treat warnings as errors during compilation. (#39325) 
The package won't compile with newer compilers because warnings
are converted to errors. Hence, disable such conversion.

Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
 2023-08-09 15:57:43 +02:00
Adam J. Stewart
39d4c402d5 Fix suffix of tab completion scripts (#39154) 2023-08-09 08:28:55 -05:00
Harmen Stoppels
e51748ee8f zlib-api: new virtual with zlib/zlib-ng as providers (#37372) 
Introduces a new virtual zlib-api, which replaces zlib in most packages.

This allows users to switch to zlib-ng by default for better performance.
 2023-08-09 09:22:58 -04:00
Alec Scott
f9457fa80b cxxopts: add v3.1.1 (#37977) 2023-08-09 14:31:10 +02:00
Alec Scott
4cc2ca3e2e rclone: add v1.63.1 and remove previously deprecated versions (#39148) 2023-08-09 14:30:33 +02:00
Massimiliano Culpo
3843001004 Fixed bugs discovered in conflicts directives (#39338) 2023-08-09 14:20:49 +02:00
Cristian Di Pietrantonio
e24bb5dd1c Changes the way MPICC is set (#39327) 2023-08-09 07:04:04 -05:00
Cristian Di Pietrantonio
f6013114eb nwchem: make sure to link both single and double precision fftw libraries. (#39333) 
With the previous version of the recipe I would get linking errors due
to missing `-lfftw3f`.

Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
 2023-08-09 14:03:15 +02:00
Martin Aumüller
bdca875eb3 protobuf: fix build for 3.21 on Centos 8 (#39162) 
apply upstream patch
 2023-08-09 13:44:05 +02:00
pabloaledo
af8c392de2 fq: add new package (#39205) 
Signed-off-by: Pablo <pablo.aledo@seqera.io>
 2023-08-09 06:23:44 -04:00
Jonathon Anderson
9aa3b4619b containerize: ensure bootstrap images contain all system dependencies (#36818) 
This also makes `spack bootstrap status` exit 1 if some dependency is missing
 2023-08-09 09:46:59 +02:00
Cristian Di Pietrantonio
3d733da70a idg: add new package (#39316) 
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
 2023-08-09 02:45:34 -05:00
Cristian Di Pietrantonio
cda99b792c miniocli: add new package (#39318) 
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2023-08-09 03:43:29 -04:00
Gerhard Theurich
9834bad82e esmf: specify build dependency on CMake when using internal ParallelIO (#39347) 2023-08-09 09:14:28 +02:00
Peter Scheibel
3453259c98 Spec versions: allow git. references for branches with / (#38239) 2023-08-09 09:07:04 +02:00
Adam J. Stewart
ee243b84eb py-lightly: add v1.4.15 (#39348) 2023-08-09 09:01:41 +02:00
Adam J. Stewart
5080e2cb45 py-torchmetrics: add v1.0.3 (#39349) 2023-08-09 09:01:23 +02:00
Cristian Di Pietrantonio
f42ef7aea7 ior: add lustre variant (#39320) 
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
 2023-08-09 08:59:21 +02:00
Jon Rood
41793673d9 hypre: fix typo in --with-sycl option. (#39351) 2023-08-09 08:37:15 +02:00
Cristian Di Pietrantonio
8b6a6982ee caliper: add KOKKOS variant. (#39312) 
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2023-08-09 08:35:56 +02:00
Cristian Di Pietrantonio
ee74ca6391 beast2: add dependency on libbeagle. (#39311) 
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
 2023-08-09 08:33:53 +02:00
Cristian Di Pietrantonio
7165e70186 chgcentre: fix compilation error by using explicit casting (#39315) 
Co-authored-by: Cristian Di Pietrantonio <cdipietrantonio@pawsey.org.au>
 2023-08-09 08:32:58 +02:00
Massimiliano Culpo
97d632a161 Push conflict between rocm and blt down to packages that actually use blt (#39339) 2023-08-09 07:53:17 +02:00
Alec Scott
571919992d go: add v1.20.6 and v1.19.11, deprecate previous versions due to CVE-2023-29405 (#39149) 2023-08-08 16:38:21 -07:00
snehring
99112ad2ad Update py-gtdbtk to 2.3.2 (#39296) 
* fastani: adding version 1.34 and changing build_system

* py-gtdbtk: adding version 2.3.2

* fastani: adding requested changes

* py-gtdbtk: adding requested changes

* fastani: remove conditional
 2023-08-08 18:33:56 -05:00
Paul Kuberry
75c70c395d trilinos: Add version 14.4.0 (#39340) 2023-08-08 18:48:23 -04:00
Jen Herting
960bdfe612 [py-model-index] new package (#39301) 2023-08-08 17:20:37 -05:00
Jen Herting
97892bda18 [py-opendatalab] New package (#39302) 2023-08-08 17:19:18 -05:00
Jen Herting
cead6ef98d [py-linkify-it-py] New package (#39305) 
* [py-linkify-it-py] New package

* [py-linkify-it-py] Added version 1.0.3
 2023-08-08 17:13:11 -05:00
eugeneswalker
5d70c0f100 e4s ci: add libpressio (#34222) 
* e4s ci: add libpressio

* libpressio ~cuda, +cuda: add +mgard
 2023-08-08 12:03:23 -07:00
Adam J. Stewart
361632fc4b Ensure that all variants have a description (#39025) 
* Ensure that all variants have a description

* Update mock packages too

* Fix test invocations

* Black fix

* mgard: update variant descriptions

* flake8 fix

* black fix

* Add to audit tests

* Relax type hints

* Older Python support

* Undo all changes to mock packages

* Flake8 fix
 2023-08-08 09:29:49 -05:00
simonLeary42
6576655137 Name clash error message include hash of clashing packages (#39234) 
Co-authored-by: Simon <simonleary@umass.edu>
 2023-08-08 14:36:49 +02:00
Mikael Simberg
feb26efecd hpx: add v1.9.1 (#39336) 2023-08-08 05:28:04 -04:00
Mikael Simberg
4752d1cde3 pika-algorithms: add v0.1.4 (#39335) 2023-08-08 05:23:10 -04:00
Paul Kuberry
a07afa6e1a OpenMPI: require compilers for F77 and "modern" Fortran (#39266) 2023-08-08 11:10:27 +02:00
Adam J. Stewart
7327d2913a ML CI: get more packages working on macOS (#39199) 2023-08-08 10:59:24 +02:00
Axel Huebl
8f8a1f7f52 C-Blosc2: add v2.10.1 (#39297) 
This adds the latest C-Blosc2 release, the first to add CMake
CONFIG install files for easier downstream usage of the installed
library and CMake targets.
 2023-08-08 10:08:12 +02:00