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Author SHA1 Message Date
Frédéric Simonis
1006dd54de Add BUILD_TESTING to standard CMake arguments (#30374) 
CTest determines whether to enable tests using the BUILD_TESTING variable.
This should be used by projects to conditionally enable the compilation of tests.
Spack knowns which packages have to run tests and can thus automatically define this variable.
 2022-04-28 17:03:13 +00:00
Andrea Valenzuela
cf905ec14a Add checksum for py-poetry-core@1.0.8 (#30359) 
Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
 2022-04-28 11:24:08 -05:00
Andrea Valenzuela
19bb4bdeb8 Add checksum for py-more-itertools@8.12.0 and fix python dependency (#30325) 
* Add checksum for py-more-itertools@8.12.0 and fix python dependency

* Package version 8.11.0 is the only version that requires python 3.6+

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Add reference to python 3.6 dependency

Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2022-04-28 10:23:10 -06:00
Andrew Davison
47f9e71302 py-quantities: add versions from 0.12.2-13.0 (#28586) 
* py-quantities: add versions from 0.12.2-13.0

* Attempt to fix the version specification

* add maintainer, implement suggestions from reviewer
 2022-04-28 11:14:50 -05:00
Chris White
2e9da47a2d Ascent/Conduit: re-add fortran compiler that was mistakenly removed (#30351) 2022-04-28 07:09:40 -07:00
Greg Becker
3e863848f8 build_env/test_env: add concretizer args (#30289) 2022-04-28 11:37:15 +02:00
Harmen Stoppels
e7a0b952ab install --overwrite: use rename instead of tmpdir (#29746) 
I tried to use --overwrite on nvhpc, but nvhpc's install size is 16GB. Seems
better to do os.rename in the same directory than moving the directory to
`/tmp`.

- [x] install --overwrite: use rename instead of tmpdir
- [x] use tempfile
 2022-04-28 01:42:42 -06:00
Patrick Broderick
8b85b33ba5 Add spiral fftx (#28583) 
* add fftx package; rename spiral to spiral-software and add spiral-package-*
* Update year in copyright notice
* Add package description to FFTX/package.py
* Changes to package files for SPIRAL & FFTX for PR
* Update package definitions
* remove unnecessary lines
 2022-04-27 22:26:44 -07:00
Larry Knox
90dafdd9f0 Add HDF5 version 1.12.2. (#30348) 2022-04-27 22:50:28 -06:00
Paul R. C. Kent
d989478154 llvm: Add 14.0.1 14.0.2 (#30347) 2022-04-27 20:22:40 -06:00
Wileam Y. Phan
ebd930ace9 Add Python chmod +x equivalent in fpm package (#30342) 2022-04-28 00:16:19 +00:00
Erik Schnetter
53e0e7aabe z3: New version 4.8.16 (#30328) 2022-04-27 17:10:15 -07:00
dlkuehn
27cbc4ebc8 tcsh: add version 6.24.00 (#30346) 
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
 2022-04-27 23:43:06 +00:00
Asher Mancinelli
2515cafb9c hiop: Enable barebones testing (#30313) 
* Enable barebones testing

Run 6 test cases representative of the entire HiOp test suite.

* Apply style changes

* Dont use unpacking for py2 compat
 2022-04-27 23:08:33 +00:00
Annop Wongwathanarat
5593611b5e armpl: add new package (#30305) 
Co-authored-by: Annop Wongwathanarat <annop.wongwathanarat@arm.com>
 2022-04-27 15:25:47 -07:00
dlkuehn
f544b051c4 orthofinder: add version 2.5.4 (#30344) 
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
 2022-04-27 22:23:34 +00:00
Luc Berger
c534e70950 Kokkos: update package for release 3.6.00 (#30315) 2022-04-27 13:52:15 -07:00
Paul Ferrell
9ffb3b4ac0 mvapich2 MPI_ROOT needed in modules (#30335) 
We've found that when using mvapich2 via modules, we need to set the MPI_ROOT
environment variable.
 2022-04-27 13:41:06 -07:00
kwryankrattiger
893c5271ac Update ascent and deps for 0.8.x (#29954) 
* Update package versions for Ascent/SDK

* Umpire build static for cuda from dray

* Propagate cuda_arch for ascent and dray packages.

* Ascent: Update dependency versions for ascent@0.8:

* VTK-h: Patch +shared+cuda for VTK-h 0.8.x

* Ascent: Patch to allow @0.8: +shared+cuda

* Turn off building ascent tests.

* Update ascent patch

* WIP: Ascent: Update patch to configure MPI build with CUDA

* Ascent: Tests require vtk-m+testlib

* WIP: Ascent: Constrain 0.7 for vtk-h

* Ascent: Directly depend on VTK-m
 2022-04-27 13:39:18 -06:00
eugeneswalker
f7a9456553 e4s ci: uncomment umpire (#29776) 2022-04-27 18:22:46 +00:00
kwryankrattiger
8250235207 Mesa: Constrain compatible LLVM version (#30102) 
Base on release date, not actual compatibility, because LLVM
version compatibility is not documented clearly in Mesa for
upper version limits.
 2022-04-27 12:03:02 -06:00
Lucas Frérot
eb51591b02 SCons: added versions 4.0.0-4.3.0 (#30296) 
* SCons: added versions 4.0.0-4.3.0

* scons: correct package name casing in url_for_version
 2022-04-27 11:08:30 -05:00
Brian Van Essen
06e7249850 Allow PyTorch to forward gcc-toolchain cxxcflag to CUDA toolchains (#30318) 2022-04-27 10:48:06 -05:00
Martin Diehl
c4ad003af2 damask-*: add v3.0.0alpha6 (#30124) 2022-04-27 16:01:36 +02:00
dependabot[bot]
1243717012 build(deps): bump actions/checkout from 2 to 3.0.2 (#30235) 
Bumps [actions/checkout](https://github.com/actions/checkout) from 2 to 3.0.2.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/v2...2541b1294d2704b0964813337f33b291d3f8596b)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-04-27 13:47:50 +02:00
snehring
da3d315cba blat: add v37 (#30166) 2022-04-27 12:26:57 +02:00
Michael Kuhn
48ff4c7679 rust: add 1.60.0 and fix libgit2 incompatibility (#30123) 2022-04-27 12:22:52 +02:00
liuyangzhuan
9fc6494a28 Added GPTune v3.0.0 and its dependency py-pymoo (#30119) 2022-04-27 12:21:44 +02:00
Valentin Volkl
9d4cedac51 tauola: fix ~lhapdf (#30190) 2022-04-27 12:16:08 +02:00
Derek Ryan Strong
f66139dfe4 Add fix for binutils 2.38 +gas makeinfo issue (#30209) 
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2022-04-27 12:11:48 +02:00
nfurmento
79e0a3dad0 Starpu and Fxt: new packages (#29285) 2022-04-27 12:10:09 +02:00
dependabot[bot]
3dbbf3a101 build(deps): bump codecov/codecov-action from 3.0.0 to 3.1.0 (#30234) 
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3.0.0 to 3.1.0.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/master/CHANGELOG.md)
- [Commits](e3c560433a...81cd2dc814)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2022-04-27 11:26:19 +02:00
Harmen Stoppels
f273e7d329 openmpi: add toggle for rsh plm (#30251) 
By default `openmpi` needs `rsh` from `openssh`, which is a somewhat
redundant dependency for clusters using slurm. This PR adds a toggle to
allow users to disable the ssh/rsh plm altogether.
 2022-04-27 11:15:48 +02:00
snehring
351072cd9f gcta: rework package recipe (#30286) 2022-04-27 08:56:31 +00:00
Adam J. Stewart
0b23f1be05 py-pil: deprecate package (#30308) 2022-04-27 02:34:29 -06:00
Glenn Johnson
b8015a71e9 relion: add altcpu variant and fix fftw (#30097) 
This package was not setting FFTW when +mklfft was used with +cuda.
Since both were set to 'True', the default build was not linked to
any FFTW, leading to a run time error. It seems MKL support was
conflated with alternative CPU acceleration support. This PR does the
following:

- adds the altcpu variant to specify non-GPU/CPU acceleration
- sets a conflict between +altcpu and +cuda
- sets an FFTW implementation
- sets fltk+xft when +gui to get a decent looking GUI interface
- sets tbb dependency only when +altcpu
- adds dependency on ctffind
- adds variant and dependency on motioncor2
- sets defaults for
    - qsub template location
    - ctffind location
    - motioncor2 location

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
 2022-04-27 10:30:39 +02:00
snehring
739f040fa8 bucky: fix compile errors with newer gccs (#30314) 2022-04-27 02:11:02 -06:00
Massimiliano Culpo
d5fc859f46 ASP-based solver: handle installed specs from unknown namespaces (#30092) 
fixes #28259

This commit discard specs from unknown namespaces from the
ones that can be "reused" during concretization. Previously
Spack would just error out when encountering them.
 2022-04-27 02:10:46 -06:00
Erik Schnetter
753f4a4bc3 reprimand: update requests on boost (#30109) 2022-04-27 09:46:22 +02:00
Lhxone
8c280d98ca suntans: add new package (#30149) 2022-04-27 09:35:40 +02:00
eugeneswalker
d5e1fa5771 py-cryptography@35: tell cargo to use cli git, not cargo internal git… (#30307) 2022-04-26 20:58:28 -06:00
Michael Kuhn
f30b79b2c5 libgit2: add 1.4.3 and 1.3.1 (#30122) 2022-04-26 20:54:30 -06:00
Erik Schnetter
54146d44f9 fossil: New package (#30311) 
* fossil: new package

* fossil: Format code
 2022-04-27 00:47:24 +00:00
Tamara Dahlgren
0c31ab87c9 Feature: Allow re-use of run_test() in install_time_test_callbacks (#26594) 
Allow re-use of run_test() in install_time_test_callbacks

Co-authored-by: Greg Becker <becker33@llnl.gov>
 2022-04-26 17:40:05 -07:00
Lhxone
e49cccb0d9 New package: CaNS (#30218) 2022-04-27 00:33:36 +00:00
haralmha
7a1841c464 hadoop: Update url and add version 3.3.2 (#29812) 
* hadoop: Update url and add version 3.3.2

* Update url
 2022-04-26 17:26:28 -07:00
haralmha
40ebeb2dc8 arrow: Add version 7.0.0 (#29962) 2022-04-26 16:57:56 -07:00
Lhxone
e5444b9a77 New package: Swan (#30217) 2022-04-26 16:32:19 -07:00
haralmha
89cc16a9cd gnuplot: Add version 5.4.3 and add workaround for not found DSO (#30163) 2022-04-26 16:03:36 -07:00
Ken Raffenetti
a24070d532 docs: Fix ROCmPackage example syntax (#30168) 2022-04-26 16:00:40 -07:00