Commit Graph

18208 Commits

Author SHA1 Message Date
Maciej Wójcik
c384ac88a0 gromacs-swaxs: new package (#26902) 2021-11-08 13:51:23 +01:00
Maciej Wójcik
8f59707f04 gromacs-chain-coordinate: inherit from gromacs package (#27246) 2021-11-08 13:50:42 +01:00
Ben Bergen
1fc753af66 Updated Versions (#27268)
- Added 7.1 release
- Added master git branch
2021-11-07 19:41:49 -07:00
Brice Videau
f02dec2bbb Update py-ytopt package and add necessary dependencies (#26879)
* Add spack package py-ytopt-team-ytopt and required dependencies.

* Removed old ytop package.

* Added author as maintainer.

* Fix style.

* Update var/spack/repos/builtin/packages/py-config-space/package.py

Update python dependency to 3.7

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-config-space/package.py

Remove run dependency from py-cython.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-config-space/package.py

Added run dependency type for py-pyparsing.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Updated description of py-dh-scikit-optimize.

* Source py-dh-scikit-optimize from PyPI.

* Added latest py-dh-scikit-optimize version.

* Made plots option False by default for py-dh-scikit-optimize.

* Removed 0.9.4 as it needs additional dependencies.

* Added version dependencies.

* Added missing py-joblib dependencies.

* Added run dependency type.

* Added python 2.7+ as supported for py-pyaml.

* Change py-config-space to py-configspace.

* Added dependency on python 3.6+.

* Fix py-configspace package naming.

* Changed py-autotune to py-ytopt-autotune.

* Update var/spack/repos/builtin/packages/py-pyaml/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Added debug variant with py-ray dependency.

* Added missing py-mpi4py missing dependency.

* Removed erroneous variant.

* Added debug variant to py-ray.

* Fix indentation.

* Removed debug variant of py-ray.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-11-06 10:52:30 -05:00
Ben Darwin
12429bda35 py-itk: fix dependencies (#27164) 2021-11-05 16:26:18 -05:00
Seth R. Johnson
c5be548046 New package: GNDS (#27176)
Adds a new package for the AMPX/SCALE implementation of the GNDS
interface,
https://www.oecd.org/publications/specifications-for-the-generalised-nuclear-database-structure-gnds-94d5e451-en.htm
.
2021-11-05 14:04:47 -06:00
Bernhard Kaindl
d9d1319442 qt: replace conflicts('%gcc@11:', when='@5.9:5.14') with -include limits (#27241)
Noting that missing numeric_limits was the cause of the compile issues
with gcc-11, I tested adding -include limits fixing @5.9:5.14%gcc@11.
Therefore, we can replace the conflicts('%gcc@11:', when='@5.9:5.14').

Co-authored-by: Bernhard Kaindl <bernhard.kaindl@ait.ac.at>
2021-11-05 14:06:31 -04:00
Theofilos Manitaras
549bd70449 py-mpi4py: Add newer versions (#27239)
* py-mpi4py: Add newer versions

* Address PR comments
2021-11-05 11:07:44 -06:00
Axel Huebl
4f692e4d9f openPMD-api: 0.14.3 (#27211)
Add the latest release.
2021-11-05 10:53:03 -06:00
Peter Brady
178e15c39d ctags uses custom autogen.sh script (#27229) 2021-11-05 09:46:09 -07:00
Sinan
0b4b731479 package/py-zarr_add_v2.10.2 (#27212)
* package/py-zarr_add_v2.10.2

* improve python dep version constraints

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2021-11-05 09:23:41 -05:00
Bernhard Kaindl
91c7c24260 hdf5: Skip racy test cases(which loop endless on many cores) (#27068) 2021-11-05 09:59:45 -04:00
Seth R. Johnson
42d8e9eeb5 trilinos: explicitly use variants instead of spec for TPLs (#27221)
Fixes https://github.com/spack/spack/pull/27188#issuecomment-961212214
2021-11-05 09:07:33 -04:00
Manuela Kuhn
d2c26fef46 r-readr: add 2.0.2 (#27177) 2021-11-05 06:34:40 -06:00
Mikhail Titov
d7ae9414c2 exaworks: swift-t package (#27234) 2021-11-05 10:46:35 +01:00
Carlos Bederián
b06198f1d4 gmsh: add dependency on gl and glu providers when +fltk (#27169) 2021-11-05 10:45:53 +01:00
Massimiliano Culpo
e93a2db8b7 hpx: simplify instrumentation_args function (#27226) 2021-11-05 02:34:40 -06:00
Simon Frasch
bfbf9deb74 spfft: add version 1.0.5 (#27223) 2021-11-05 01:52:37 -06:00
Simon Frasch
6bae3cd6bb spla: add version 1.5.2 (#27222) 2021-11-05 08:45:34 +01:00
Sinan
288176326c new package: librttopo (#27182)
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-11-04 21:01:42 -06:00
Alec Scott
82b45d112f [New Package] Add Restic v0.12.1 (#27208)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-11-04 17:12:34 -07:00
Ben Darwin
f2a42ac4c6 c3d: add new package (#27155) 2021-11-04 15:38:28 -07:00
Jerome Soumagne
c25a4ecfc2 libfabric: add 1.13.2 (#27202) 2021-11-04 15:04:40 -07:00
downloadico
084ce46107 exciting: add "oxygen" version, multiple fixes (#27217)
ensure that none of ^intel-mkl, ^intel-mpi, and ^mkl are used, unless
the compiler is intel.
Fix bad logic in the src/src_xs/m_makespectrum.f90 file in the oxygen version.
Add the -fallow-argument-mismatch for gcc >= 10.
2021-11-04 12:24:27 -07:00
Cameron Smith
7542d8adc8 omega-h: add support for stand-alone testing (#26931)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-11-04 12:02:02 -07:00
Joe Schoonover
4cc2adcbc3 Add new versions for HOHQMesh and switch to tar-ball releases (#27194)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-11-04 11:54:02 -07:00
Jon Rood
ed3d459a83 Add RelWithDebInfo to protobuf build_type list. (#27220) 2021-11-04 10:16:44 -07:00
Andre Merzky
f6ed8b6150 Feature/exaworks spack (#27216)
* add exaworks spack meta package

* add maintainer

* switch to `BundlePackage`

* flake8

* another flake8 fix

* remove incorrect dependency
2021-11-04 06:07:45 -06:00
Massimiliano Culpo
1dcabdbc8d mfem, hpx: fix recipes after conditional variants (#27215) 2021-11-04 03:52:38 -06:00
Seth R. Johnson
503576c017 kokkos: refactor defines to use helper functions (#27189) 2021-11-04 09:31:29 +01:00
Erik Schnetter
6a7b07c60b ssht: New version 1.5.1 (#27173) 2021-11-03 22:10:56 -06:00
Cameron Stanavige
7102e295b9 scr: 3.0rc2 release, variants and deps updates (#27178)
* scr: 3.0rc2 release, variants and deps updates

This adds 3.0rc2 release for end users to aid in testing scr for
upcoming 3.0 release.

Included in this change:
- Require most recent component versions for this release
- Add a variant for PDSH as it is now an optional dependency with
this release
- Add bbapi and datawarp (dw) variants
- bbapi_fallback variant now requires bbapi variant with latest
release
- Add variants to enable/disable examples and tests
- Add shared variant and current conflicts with ~shared
- Update cmake_args to account for added variants where needed

Additional updates:
- Add maintainers
- Use lists and for loops to clean up repetitive code involving all
components
- Use self.define and self.define_from_variant to clean up cmake_args
- Use consistent quoting throughout package

* Un-deprecate v2 and legacy

* Use new conditional variants
2021-11-03 20:06:02 -07:00
Erik Schnetter
b9cdaa5429 simulationio package: add variants asdf, hdf5, rnpl, silo (#27172)
Define new variants asdf, hdf5, rnpl, silo to allow disabling or
enabling dependencies.
2021-11-03 18:07:35 -07:00
Erik Schnetter
0d30799bef hwloc: New version 2.6.0 (#27170) 2021-11-03 15:45:38 -07:00
Erik Schnetter
4045ab45de mpitrampoline: New version 2.2.0 (#27171) 2021-11-03 15:42:14 -07:00
Erik Schnetter
91a6e38404 shtools: disable libtool, add 4.9.1, fix --test=root (#27014)
The Makefile expects the "other" libtool, not the GNU libtool we have in Spack.
Closes https://github.com/spack/spack/issues/26993
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-11-03 23:33:52 +01:00
Thomas Helfer
c0a81399bf tfel and mgis: add new versions and fix tests (#27011)
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-11-03 23:24:28 +01:00
Andrew W Elble
7b3e02471b new package: telegraf (#27201) 2021-11-03 15:00:33 -07:00
David Boehme
47babb2518 Add Caliper v2.7.0 (#27197) 2021-11-03 13:22:43 -06:00
Seth R. Johnson
12a0738030 trilinos: mark conflicts in @:13.1+tpetra^cuda@11 (#27188)
* trilinos: fix @13.0.1+tpetra^cuda@11
* Mark CUDA conflict with old versions and always define TPL
* trilinos: patch doesn't build so just mark as conflict
2021-11-03 12:38:03 -06:00
Axel Huebl
e5a9beed28 WarpX: 21.11 (#27158)
Update `warpx` & `py-warpx` to the latest release, `21.11`.
2021-11-03 11:18:23 -07:00
Kyle Gerheiser
25f1aad1c8 nemsio package: add version 2.5.4; add option to build without MPI (#27030)
Version 2.5.4 adds an option which allows Nemsio to be built without MPI
2021-11-03 10:18:17 -07:00
Manuela Kuhn
09eb79b571 r-reprex: add 2.0.1 (#27174) 2021-11-03 12:05:28 -05:00
Satish Balay
346f3652c6 petsc, py-petsc4py: add versions 3.16.1 (#27152) 2021-11-03 10:52:35 -05:00
Manuela Kuhn
78b1512966 py-datalad: add 0.15.3 (#27193) 2021-11-03 09:49:46 -06:00
iarspider
dede8c9d6b New version: py-jupyterlab-pygments 0.1.2 (#27186) 2021-11-03 10:27:55 -05:00
Manuela Kuhn
5c13c5892b py-nibetaseries: add new package (#27187) 2021-11-03 10:26:30 -05:00
Greg Becker
67cd92e6a3 Allow conditional variants (#24858)
A common question from users has been how to model variants 
that are new in new versions of a package, or variants that are 
dependent on other variants. Our stock answer so far has been
an unsatisfying combination of "just have it do nothing in the old
version" and "tell Spack it conflicts".

This PR enables conditional variants, on any spec condition. The 
syntax is straightforward, and matches that of previous features.
2021-11-03 08:11:31 +01:00
Manuela Kuhn
61ded65888 r-dtplyr: add new package (#27112) 2021-11-03 00:24:21 +00:00
Dan Lipsa
f1fb816d93 Add build editions for catalyst builds. (#22676)
* Add build editions for catalyst builds.

* Fix style.

* Build edition works only for 5.8:
2021-11-02 17:36:53 -04:00